morexGenes - Barley RNA-seq Database

Contig contig_44492
Source Contig contig_44492
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_44492 (8777 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_44492

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_60529	1	3467 bp	MLOC_60529.1	Available	Available	LOC_Os07g49230.2, FRAME:+3, EVALUE:0.0, 13107.m05287 protein ubiquitin-activating enzyme, putative, expressed
MLOC_60530	3	2035 bp	AK374637	Available	Available	None
CDS Structure of MLOC_60529

CDS Structure of MLOC_60530

Contig Sequence (8777 bp)

>contig_44492 8777 assembly3_WGSMorex_rbca.fasta
CGGCCGGCGCGGGGCCCGAGCGGCGCGGTGGCGGCGGGGGAAGCAGGCGGCGGCGGCGGA
GGGGGCGCCAGGAGGCCCAAGCTCGGCGCGGGCGGCGGCGGGGGCCCGAACGGGGCCGCG
CCGCAGGAGATCGACGAGGACCTCCACAGCAGGCAGCTCGCCGTGTACGGGAGGGAGACC
ATGCGGCGCCTCTTCGCCTCCGACGTCCTCGTCTCCGGGCTCAACGGCCTCGGCGCTGAA
ACCGGTCTGCCTGCTAACCCCGCCCTTCTCCGCCTGCCATTTTTTGTTTTACTTTGTTGC
GTTGACATACTATATCATGCATACACTGAATTTCACACCAATGTCCATTCCTTGTAGAGA
TTGGACTGTGTTTTTGTCTGCTATGTAGTGCTCGTACTGCCTAAACTCTTGTTCATACTG
GTCACGAATCGCTCAACTTCTTTTAACCATTCTGTGTTGGGGATGGAATGGTCGATTACA
GCTAAACTGCAAACTTGGATGCTCGTTTCATTACCGATGAGAATGGGACCTGGGGATGGG
GGATGAGTGCTTGTGCTGTTTCTGTTCATATCTATTTCATGTGTTTATACAAAAGGCTTG
CTTATTGTAGCTGCAGAATTGTGCTGGAAAATTCTACACCAATGTCCATTCCATGTAGTT
GTAGATTAACTGGTCTATGAGTGTTTCTTTGTCTGTTGTAGAGGTGATATATCCCCGAAT
CTGTTAGAGATACTGGTCTGAAATTGCTGAAAGGTTTTAACCCACAGTGTTGGGCATGTA
AATGTAATGCTCCATAATATAACGGCTAAACTGGGGATTGCTGGATGCTCCTTTGATTTA
TTGATTAGCGATGCAAATGAAACCTGGGGGTGGGGGCAGTGCTTGTGTTGTTTGTGGCTA
GCCAATTTTTTTTTTTAATTTTTATACCAGTTAAAAGTGTTAGCAGGTTCTGCAGCTAAT
ACGCCCCAACTCTCATGTGTTGTGCCTGTTGTATTAAACATACATGCTGACCTTTTTTGC
AGCAAAGAATCTTGCCCTTGCTGGAGTCAAGTCTGTCACTATACATGATGTGAAAAATGT
GGAGATGTGGGACTTGTCTGGCAATTTCTTTTTATCTGAGGATGACATTGGGAAGAACAG
GGCCGCTGCTTGTGTAGCAAAGCTGCAGGAGCTGAACAATGCTGTTCTTATCTCAGCTCT
AACAGAAGAACTAACGACGGAGCACCTGTCTAAGTTCCAGGTTTTTCTCTAGTCCTTACT
GCCAAAATCCATTGTTTTCCACTTGCAAACTTTTTCTTGCTGACAGCTGACCTTATGTGT
AGCCTGCTGCATACACCAATTTAGATTTCATACACTTCGCGTTGCTTTGATATGACTGTC
TAACTTGCAGCTTATTTTCATGGCAGGCTGTTGTTTTCACTGATATAGGTTTAGACAAGG
CTTATGAATTTGATGAGTATTGTCACAACCACCAGCCTCCTATTTCCTTCATCAAATCTG
AAGTCTGTGGCCTTTTCGGTAGTGTCTTTTGTGACTTTGGACCAAAGTTTACTGTTCTTG
ATGTTGATGGTGAAGATCCACATACTGGTATAATTGCATCCATCAGCAATGATAACCCTG
CACTGATATCCTGTGTTGATGATGAACGGCTTGAGTTCCAAGATGGTGATCTTGTTGTTT
TCTCTGAGGTCCATGGTATGACAGAACTGAATGATGGAAAACCAAGGAAGGTTAAAAATG
CAAGGCCGTTTTCATTTAGCATCGAGGAGGACACAAGTAACTTTGGCACTTACGTAAAAG
GTGGAATTGTCACACAGGTGAAAGAACCAAAGGTGCTATGTTTCAAGGCACTAAGAGATG
CCATGACAGATCCTGGAGATTTTCTTCTGAGTGACTTCTCAAAGTTTGAGCGCCCCCCTG
TGCTTCACCTGGCATTTCAAGCTCTGGACAAATTTAAGAAAGACCATGGACGCTGCCCTG
CTGCTGGTTGTGAGCAGGATGCTCAAAGTTTTCTGAAGATTGCTGCTGCTATTAATGAAA
CTTCAGCTGATCGCAAGCTGGACACTATTGATGAGAAACTATTCCAACAGTTTGCAAGTG
GTTCTCGAGCTGTTTTGAACCCTATGGCTGCGATGTTTGGTGGTATTGTTGGTCAAGAAG
TTGTGAAGGCTTGTTCAGGGAAGTTCCATCCTCTCAACCAGGTTTGTGCTCTGATCCACA
TGTCTTCTTTGTTCTTATGGTCACACATTATCCTTTTCTGATTAAGCTCCAACTTATGCA
GTTCTTCTACTTTGACTCTGTTGAATCCCTGCCAACATATCCGTTGGAACCCCAAGACTT
GAAGCCATCAAACAGCCGCTATGATGCTCAGGTCTCTGTGTTTGGTTCCAAGCTTCAGAA
GAAAATGGAGGAGGCTAATACTTTTGTTGTAGGGTCTGGTGCTCTTGGATGTGAATTCCT
GAAAAATCTTGCGTTAATGGGAGTGTCTTGTAGCAGCAAGGGAAAGTTAACCATAACAGA
TGATGATATCATTGAGAAAAGTAATTTAAGCCGTCAATTCTTGTTCCGTGACTGGAATAT
TGGACAGGCAAAGTCTACTGTGGCTGCTACAGCCGCCAGTGCTATCAACCCCAGCCTTCA
CATTGATGCTCTCCAGAACCGTGCCTGTCCAGATACCGAGAATGTCTTCCATGACACATT
CTGGGAGGGCCTAGATGTTGTCATCAATGCACTTGATAATGTCAATGCCAGGATGTATAT
GGACATGAGGTGCCTGTACTTCCAGAAGCCACTACTGGAGTCAGGTACATTGGGTGCAAA
GTGCAATACTCAAATGGTGATTCCTCACCTTACTGAAAACTATGGGGCTTCAAGAGATCC
TCCTGAGAAGCAGGCACCTATGTGCACAGTCCATTCGTTTCCACACAACATTGATCACTG
CTTGACATGGGCTCGTTCAGAGTTTGAGGGTTTGCTGGAGAAAACGCCAAATGAAGTGAA
CTCTTTTCTGTCTAACCCTGCTCAATATGCTGCTGCAATGAGGAAGGCAGGTGATGCTCA
AGCAAGAGAATTGCTTGAACGTGTCTCTGAGTGTCTTAACAAGGACCGGTGCAGTACATT
TGATGATTGCATAAGCTGGGCCCGACTGAAGTATGTTCTCTTTTCTACCTTTGTTTGTTG
CAGTCTCCTTTGCATGAATATTGTTACATTTTTGCTTGGTTCTCAACTGGACTTTAAGCT
GCTCACTTGGTTGCCTAGATAATTCATCCAAAAAACATCACATTCTCCTTTACATGAAGT
TTGTTACGTTTTTGCTAGGTTCTCAACTAGATTTTGAGCTGCTGACTTAGTTGTCTAGAT
AATTCATCACAAAAATGATTAGGTCGGTCCACCAGGCACGGATGATCAATTTAGCCGTTG
TCACTTTTATATTAACATTCAATTGTGTGACCTGCATAGACTAGTACTGTTGAGAACTTG
ATATTGCATCACCTTGCTGTGCATGAGGCATTGGCATTAAGTACCGTACTTCTATAATTT
CTCTTTTTTCCTTGGAGGTGTAGCTCATTTTGTGTTTCAGATTTTGGCTTCAAGTTAAAG
TCTTTTTTTTTTTTTTCAGATTTGAGGATTATTTCTCTAACCGCGTGAAGCAGCTCACAT
TCACTTTTCCTGAAGATGCTGCCACTAGTATGGGTGCTTCTTTTTGGTCTGCCCCCAAGC
GCTTCCCCCGTGCACTGCAGTTTTCAGCTGCTGATCAGTCTCACCTTAACTTCATTATGT
CTGCTTCGATATTGAGAGCGGAGTCATTTGGGGTTGCTATACCTGAATGGGCAAAGGATA
CTAGTAAGCTGGCTGATGTAGTAAAGAAGATTGCAGTTCCTACATTCGAGCCAAAGCAGG
GGGTTAATATTGTGACAGATGAGAAGGCATCGAATCTTTCCAGCACCTCAGTTGACGATG
TCGCTGTTATTGAAGATCTTCTGGCTAAGTTGCAAGAATATGCCAAGAGGCTACCTCCAG
GATTCCAAATGAAACCTATCCAATTTGAGAAGGTAATTATTCCAAATATTGTTCACAACA
TTTTATACCCACATTATGACTCTTCTGTACTCTTCAGCATGTAGGTTTGAAAATGTTATT
CCAAATATTGCGTCAGCAAGTCCTAGGTTTAAATTTTTGTTCAGAAACGTTGACATGTTT
TCATATTCACATTACAACTCTTCTGTACTCTTCAGAATATAATCCCCTCGCTTTGCTTTT
ACAGGATGACGACACCAACTTTCACATGGATCTAATATCCGGGCTAGCAAACATGCGTGC
AAGGAACTACAGCATCCCAGAAGTCGACAAGCTGAAGGCCAAGTTCATCGCAGGCAGGAT
CATCCCAGCCATCGCAACCTCAACCGCAATGGCCACAGGGCTCGTGTGCCTCGAGCTGTA
CAAGGTCATCGCCGGTGAGCACCCCGTCGAGGACTACCGCAACACATTCGCGAACCTGGC
CCTGCCCCTCTTCTCGATGGCCGAGCCAGTTCCACCGAAGGTCATGAAGCACAAGGAGAC
GAGCTGGACCGTGTGGGACCGGTGGTCCGTCAAGGGCAACCTCACCCTGGCTGAGCTCCT
GCAGTGGTTCGCCGACAAGGGCCTCACCGCCTACAGCATCTCCTGCGGCACCTCCCTGCT
GTACAACAACATGTTTGCGAGGCACAAGGACAGGCTGACCAAGAAGGTGATCGACATCGC
CAAAGAGGTGGCCAAGGTGGACGTCCCCGAGTACCGGAGGCACCTGGACATCGGCGTGGC
CTGCGAGGACGAGGACGAGAACGACGTCGATATCCCTCTCGTCTCGGTTTACTTCCGCTA
GTCGGTCCTCGAGATAAAACTTTCTGCATCATCCCTAGGCCTGCTCTTCTCCAAAACTAG
CAAGATAAAAAACCTTGCATCATCATCCTCGGGCCTGCTCTCAAAGACTAGCTTTGCTAA
ATCCCTGATGTAGTCAAGCCGCCGCTCTCGCGCTGATCGATCTATCATATCATGGTTACC
TCAAGATGTTCTCTCCTTGTGGTACACTGGTCCTGCAGCTATTTGCTCGTTGGTCGCATT
CAGATAGTTGGGAGGAATGAACAAAGGACACATCGGTTACGGTTAATCGACAGGTTACCA
ACAGACACATTTGGTAGTACCATCTTTATGGCGCATTACCATCTCTCCTCCGGTTATCCA
GTGAGCTCGCCCAGTCTTCTGGCTGAATCTGTGACGTTTTTCCATCAGGATATTTTTCTC
CGTAGATGTTTGCAGTTGCACCTTGAGATATTTGATTCAGATTTTTGGTCTGGCTCAAAG
ATCGAGGCTGGGCAGACAAGTGCCGGATCACGAACGCGGTTTAGCTGCTGATGCAGGAGA
CATGACTGCATATGCACCATGTCATCTGATATTATATTTTTGTTGGCACGAACCTAGGAC
TCTCTCTCTTTCCTAAGATCAAAGATCGTGTCAGCGCCGAGACGACGCAAGATCAAGTAT
TTTATTTATCCTGCGCGGTCAGACGATGTAGCAGTACTACTAAAGTTAATCCACTCGTTA
ACGGTCGAGGGGGAGCAGGAACGGGTCACGGATAACCGGCTGCAGCACCACTTGATTGTA
AAGTAATTCGGGGGGCAGTTGATGAGAGAGCGAAGGGATCACGTCCAAATAAGTGATCAA
TGCAGCATGTGAGTCTCGGTACTACTCCCTCTGTTCCTAAATANNNNNNNNNNNNNNNNN
TTCACTATGTGTCTACATACGGAGCAAAATAATTAAATGTATACTTTAAAATATGTCTAT
TAGTTTATATACATCCGTATGTAGTCCACTAATGAAATCTTTATAAAGATTTATATTTAA
GAACGGAGGGAGTAGTTTATTTGCGGTTATTAAAGGAAAACACTGTTGCTAGTCACGGTC
AACTGCTCTGCTTCTGGGTACTACCTCCCATACATGTAAACCAAATTACTACTACTACGA
GGTGTATATGTAAGCTGCACCGAATCACCGAGCCGTCGTGCTTGGTCTCCCGGTCCGCAT
CACGCACGCACGCACCAGGATGAATTTCCACGCAATTTTCAAGGGGTGGCCAGCTCCGTC
CATCTATTTTCCCTGGGAAAAACTTTCAAACTATTCATCAGTTGTCATGGCGGTAAAAAT
AACACAAGTAATAAAATTATTACATGTAGGTGGTCCGTTTAGCTCCCATCTAGATATAAA
TTAACTATAAGTTTTGCCGTTTACGCGAAGATTTTCAAAGGGGGTTTCACACCGCACCAT
TTCTTCATGTGCGGATCTATGCGGGTTTTTTCTTCTTCTTTTGTTTGATCGATCGCGGTT
ACATGAGATCTTGTACGTTCTCTAGATGAGAATCAGCAAGTCCGAATTGTCAAAAACTCT
TCGCAGCTCATAGTCTGCACCGCTACTTGGCAGCAGGTATGTCTTGCCCAAACTCGACTC
AAGACTTGTCGACACTTTGCGAACCATGAACCCATGATTCGCAAACCTTCTTCCTATCAC
TTGTCGACGCAGGCTCGGCCCGAGACTTTAAAAACTCTATACGAAACTTGAACCCGTGAT
TCGCAAATCTTCTCTCCTTCTTTTTCGCTCCTTTTGTCCTCCTTTGAAAGATTCTCCTTT
CCATTTCCTTTGCTTCGCCTGAAAAAAGAAGAAGAAGCAAAACAATAAAATCAACAAAGC
GAAGCATTCAAAACAGGGCATAAAACACACACACACACACACACACAAGAATCACAAAAA
AGGGTTCACGCGTCCAACCTTTTTTTGTTGCCAGGCTTTAACAAGGAAACAATAGTAAGT
AAGTAAGCAGGAAAGGAAGGAAGGCATTCATTTTCGTTGAGGAGAATGGAATGAATGACG
CTTGTCCCCGAGCTGGCCGGTCTCTGTCGCCTACCTTTCCCTCGGCCGCGTCCAACTCCA
ACCCAACCTCTTCCCTCCCTCCACCGCTCACGCGTTTCCTCCCAGATCCCCCCACCCCCA
CCCTCTCCCCTCGCCACCAAACCAAACCCAGCTTCACCTTCACATTCCTCTTCTCTTCTC
GCTCGGTCCCCGCGACTCGCTCCAGCCACATGCCACTGCCCCGCGCCCGCGCTCCTGCTC
CTCTCGCCGCCGCTGCCGTTCCTCCCCACGACTGATGGGGGACCCGCGTCACCCGCCGCC
TTCGCTCCACCGTCTTCTCCTGCCGCCGCCGCTGCTTCTGCTGCTGCTGGTGCTCGTCTC
CGTCTCCGTCTCCTGCCCGCTCGTCCACGGCGCAGCAGGTCCCGCCTCCTTCTTGGTTTT
TCGCTTTGCTTCTTTCTTTCTTCCTTCCTTCCTTCTGCCGAAGCGGGCGGGCTGATCTCG
GGCGTGTCGTCCTTCTTTGTTTCTGCAGCGGGTGGAGGAGGGCCCGGTGCTCGGGAATGG
AGCGCGGGCATGGAATCCGCTCCCGTTCAGCTCAGGTGAGCCTGCGAACCCGCGGCGCCC
TTGCTGATTTTAGTACTGCTGCTATGCTCGTTAGTCATGGAGATCGGGAGGGCTGGAATT
TTCTGGGATTTTTTGTTTTGTTTTGAGGGGGAGCGTATGCAACTGTATAACTGTAGTTTG
GCTTTGCCTGGTGGTGTTGGTTGGTGTGGTGATTCGGCAATCATTCGAAGCGGCCTGGCT
TATCGGCCGGTGGTTAGGTGGAGCCGAGTTGTTATGACTTTGGTTGAAAGGTGGCGCCGT
GGCGCAAATCTGCGGGGAGGGAGGGCATGTTTCTGCCTGCCTGCCTGCCTGATTGATCGA
ATCATCTCTCTTCTGGTAGTAGAGTAATCAATCATGCCGGCATCTGAAACGGGTTAACAA
ATCTGAACTCGCACTGTTCTTTGTTTTGTAATAATAATAACATACAGCTGTTGTTACATC
TGGAAATGTCACCATGAGTGGAATTTACTTATGATGATCAAAGTGTTTCTTACTCAAGTT
GATATGTTTCTCCGTTTTGCTTCATGTGCTGTTGAAACATCAGGAATTCGCACCCGAGAA
GGCTGCTACAGATACACTTCCCACCATTTCTCCTGCCACCGACTCGAGCTCCTGACCACA
ACAAGGGCAGGCATCGCGCAGGAGCACCATCGCCTGCTCCGTCGCCCTCGCCGTTCATCG
CCCCGCCTAAGGCATCACCATCTCCATCGCTAGCCCCTCCACAATCGGTCAGGCCTCTGC
CTTCCGCCCCACAGCCAAGCCATGATCCTCGGGTTGATGCCCCAGTCAACGCTGTTCATA
AGCATTCCTGGAGAGCCTACGGTTTGGTCACGGCAGGTGGTGCGGCCTTCCTTGTCATGA
CTGCGGCATTTGCTGTATACTGCCGGGCGAAGAAAGTCGGTACTGTGAGGCCTTGGGTAA
CAGGGTTAAGCGGGCAACTGCAGCGAGCCTTCGTGACAGGTATCCTTCATGCTATGTGTG
CATATCTGTTATCATATATTTTGTTCTTTGGTTGCACCTTAACACATGATCAATCATGCT
TCCAGGTGTGCCTTCGCTGAAACGGTCAGAGCTGGAGGCAGCCTGCGAGGATTTCAGCAA
TATAATTGGTTCTACGGCTAACTGCATGTTGTATAAGGGAACATTATCAAGCGGGGTTGA
AATAGCAGTTGTGTCAAGTTTAATATCATCTAAGAATGATTGGTCAAAAGAATGTGAATC
CCAGTACAGGAAAAAGGTAACCTGCCGTTAATCTCCTTTATATGCACACTATTTTTCTTT
TGCGAAATACACATTGA