| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_44476
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_60510 |
1 |
1942 bp |
None |
Available |
Available |
LOC_Os05g17830.1, FRAME:+2, EVALUE:3e-31, 13105.m01882 protein retrotransposon protein, putative, unclassified |
| MLOC_60509 |
1 |
540 bp |
MLOC_60509.1 |
Available |
Available |
None |
| MLOC_60508 |
1 |
537 bp |
MLOC_60508.1 |
Available |
Available |
LOC_Os05g17830.1, FRAME:+1, EVALUE:4e-22, 13105.m01882 protein retrotransposon protein, putative, unclassified |
CDS Structure of MLOC_60510
CDS Structure of MLOC_60509
CDS Structure of MLOC_60508
Contig Sequence (6291 bp)
>contig_44476 6291 assembly3_WGSMorex_rbca.fasta
TTGAGGAGTATATGATCCAAAGAATTTATGAGAATTTTTGGAGAATTTTGGGAATGGCAG
AATAGTAGGTTGCTTCACAAACAAGGGCAAAAATTGACACATGGACATGACACATAGGCA
AAGCTAATGATGTGGCGCCTAGTCATAGCTATGACCATCTATATTGGTCATAATTAGCTA
GAAATTAGGCAGCAGACGAGTGTTATCTGCTTTAAGACCATTTCCCGTAAGGAAATTACG
ACCTTTTTTGACCAAATTGGACGTTATGCTTTGGGGTTGGAGCCTCCCGAACAGCTTACG
ACCAATTGATCTCAAATAGTCGTAGATTTACAACCATTTCTGCCAGGGTAAATGCCATAA
GGTCACTAGTTGACATATTTCTTGTAGTGCAATCACGCCCTGATAGATCACCCTCATAGA
TCAAATCTCCTAACTAAATCCAAAATGACTCCAAACTCAATTCAAAAATATCTCCTCACT
AGATCCAAAATAACTCCAAACTCAATTCAAAATATCTCTTAACTAAATCCAAAATAACTC
CAAACTCAATACAAAATATCTCCTAACTAAATCCAAAATATGTCATAACTATATACAAAC
TACACTTTCTTTGGATCCAAATCTGCTGACAACTTTCTCATGCCACATAACCCAAACTAA
GTCCAAAAGATATCCTAACTAAATCCGAATTACACTTCCTTTGAATCCAAATATAGTCAA
AACTTCCTCAGATTACATATCCTATAAACCCTAATCAAATCTGATCCTTTCGGTACTATG
CAAAAGGGACCAGACAAGATTAGAGATGGCTAGGAACTTACATCTCAAAGGTCGTTGCCA
AGAACCGGCATGATAAAGTTGATGGACAACGATGACGATGATCTAGCCTCGCGTCGGGGA
AGGGGCGTCCAATCGGGGAAGTAGGGGATTAGGTAGCTTCTCGAAAGATCTGGCACCGCA
TAACCCGAGGGATCGCGTGCGAGGGAGGAGGATGAGAAGGGAGTGGCACGACGAGTGCGT
GCGGTGTTGATCGACAGTGATCGAGGGCGATGATGTGTTCGTTGGAGACTAGGGTTTGAG
AGGAGGCGAGGAATCACTCTAATGCAAATTTAAATGACCATGCACGATGACATTTAGTTC
TAATTAAGTGCTATATTAATGTAATTAACTTGATTTAAAATTTTAGGACAATAATACCCC
TAGACTTAATTGGGCCAACTAAACTTAAATATTTTTCTAGGTCAAAAATGCTCTTGTGCT
TAAATAAGGCCCTCAATCACTGGATCGTCCATATAATACACGTGCTCTCGTGTATTGCAG
TGCACCATAAAATTTCCCGTTTAGATTACTAAAGAAGTGATCTAAACTACTCTTATATTT
TATTTATTTCAAAGGGAATACTTTGCAATACGATTTGCTTCTGATTAGGTGGTTTCCTTC
GGATGATCTATCCTTTTGATGTCTGTTGTTGTATTTTCTATTTTGGCCTTTCTATGTTTC
TAGCTTTTATTATTTCCTTCATATAGACTTTTTCTTTATCTGATTACTTTGGTTTGTGAA
TATAGTATGTAACATTTATTTGAAAATCACAAAAGAAATAGCAGCAGAGTTCTATTGTTT
CCCTTTAAAGAAACCGAAAACATAAATAAAAAAGGATGACTCTGCAAGACCTCTGGCCAA
ATTCATCTACTCCCTCCGTTCGTTTTTATAAGATGTTTCAGATAGCTTGTTTTGCACTAA
TTTAGGCAGTGAATGTCTAAAACGTCTTATAAAAGTGAACAGAGGGAGTAGTATAAAATA
ACTGGGTCGGAGGAAATGAGTTCTCATTGCACCACTTCCCATTTGTTTAGCACTTACCAG
ATATCATAGACATGCCTTCTCGTGAGGTAGTCAACAAGCAAACCATTTTATGCTGCGACG
GAACACACAGAAATGCAGTCGACTTAGTTACACTTTTTTCGGTTCCTATTACAGTCTGTA
CGTGTTACAGTGGAAGGTTCATTGATCTTTAGTTGAGTCATTCATCTGATTTACACCTCA
CGTGGTGATACCATCTCTGCTACTCAACTGTCATCATCAGTCTCATCGGAAACCAAGTTT
TGGTTCATGACAAACCTCAGACTGTCACCCTCTTCAAGCTCCCACTGCTTTCTGAGTTCA
CCAATGGCTCTTGCTGCAGAGCTAGCTACAGCGGGATTGGAATCTTGAGCCAATCTCTGC
AGTTAAAAGAAGGGTCAACCCATATTTAAAGGAAAACACTGAAACAACTTTACTTTCCAA
AGTAAAATCAATAACACAGGTCATGTAACGATAAGTGAGAATTATATAGAGAGGGCTTCC
CATTCAATGGATGGAGCTTTGATGGTGGAAAAGTGTACGAATAGATTCAATGGCTTGGAG
CTTTCATGGTGGAGAAGCATACAAATAGATGACATCTTCAAAGAGAACTAGATAATTGCC
CATGGGTTGCAACGGGGGCATAAGTATTCTACTCCCTCCGATCCATATTACTTGTCGCTG
GTTTAGTACAAACTAACTTTGTACTAGTCGTATAGCTACTCAACTTTACACATGGATCGG
AGGGAGTATTGAATTAGCCTCTGATTCACATGTCCATATTAATTTGAGTAGCTGATTGTT
TTAGTCTAGTCTTATAGACTTGTAAAGTTGTAACTCTAGTGTTTCTATCAATGAGTCGAG
ATGCATGTTTTGCATTTTCTTCGGGAAAAAATATAAATTTACTCAAATTGCATTTCATGT
CAAATGTCCAGAACATCACCTATTTACAATCTGACGTTGTAACAGAGCGCAGATTGATTG
GGGATCTCAGTGGTTGAAGCCACATATAAGAATTTCAGACATGAACAACCCAACAGTCAT
ATGGTTCTTCTTTCGGTAACATATGAGGGATTTATGCTAACCTGTAATGCGCCCATCCCA
GCATTCCCTAGGGTCCACATGGATGGAGCGGCAGCCAATGCATTAGCCAAAGCTTTCCTA
CAAGGAGTAAAAGCAAATAATTGACACCGATTCAACATATAACACCAAAATAGTATAGAA
CAAAACACAGCTCAGTGATCGGGACACTGAGCTACAAAGGTCCTGCAGTAATTCTAGCAA
ACTACTTATTCATTTTATTTGCTATTTGTAGATCCAGACAAAGAAAAGGCTCAAGTACAC
TGGTCTCCGAGCTACCATCCGGCTCAAGTTCAGACCGGTCTCGCTGACACCATGACCAAG
AAGACCTCGAGCCCTCTCGCGCTCCAAACCCTCCTCGCGGCAACAAACTACAAGACCTAA
TCCTAGAAGGTGAACGAGGACACCGTGAAACTCAAGAGCAACGTGTGAATGAAAACCGAG
AATGCCAAATGCATCAAGAAAAATAAAGGCGCCGTCAACAAGAAGAGTGTCACCTACAAG
ATGAAGAACGCAATGCGCACCACAGAGAAGAAGCTCGTAACGCTGATCAAGCAAATCAAA
CCTTTTGTGCTCAAAGCACGAATATCAAGAGCATGCCCCTCAAGTAAGAGAAGTTGGCAA
GAGGACGAAGCTTGCCTTGAGCAACGCCACAAGATGCGACGCTTGGCCAATGCACGTTGC
ATTGATGGCCAACTACACAAGGAAGAGCATGACGAAAAACCACTGCCTCCATAACAAGAA
CAACGTCAATCTCGCAACCATCATGAAGCAGAGGAAAGCCTTGGCAAGCTCAAGTTCACA
ATGACTAAGTTATACGGCGGCATTGACCTCGAGGAACAAATATCATGGGCGCTCAAGGTA
GACAAGATCTTCGGGCCCACGACTTCGACGAGCCAAAGGCAATTGCCGTGGCCTCCCTCT
AGTTCAATAAGTATGCACTCATATGGTCTGAACAAGTACAAAAACTTTGACAAGAGAAAG
GAGAAACCCCCTTTGCCACTTGGGATGGAATGAAGCAAGTCATGAGAGAGAGATTTGTGC
CCACGCACTATAGAAGCGACCTCTTCAAGAAGCTCCAAGTTCTCAAGCAAGGGACCAAGA
CCATCGAACAGTACTACAAGAAGATGGAAATTGCAATGATCCACGCTAATGCCAAGAAGT
CCAATGAGCAAACAATGGCACCCTAATTACCTCATCAAGAAAATTACGGACTTTCAACCC
TATACAAAAACTTGCCTGAGTTGGTATACCATGTGTGCCTACCAAGCGCATTATGGTGAC
CAATGAAGACGAAGAATACGAATCTATGGGTGAAGGAAAATTGGAAGCTTTGCAACGTGT
TGCTCGACACAACCAAGTAAACAAAGGCAAAGATGTTCATGTCTTCTATGACAATGATTC
GAGCCCGACTCTCGTTATCTCCTAGATTCATTGATGGTGGTAGTTGCCATGACTTGGCAA
GTGAAGAACTTTGATCCAAGTTGCGTTTCAAGTACAAGTGCCATCCTTGACCAGACATGG
TCTAGTGGCTTAGTGACACCGGCACTATCAAGGTAGAGCACACAATTGAAGTCTCCTTTG
ATGAGGACATGGCTACCTTGGATATGATCACAAATATTGCATATGCGCGTATTTATAAGA
GGTGAAGTACTTTTGTTTTATATAGCATAAATAAATCATTGCATAACTATTATCAGAAAT
CGCCTCAAATAAATACGCATATGCAATATTTGTGATCATATCCAAGGTAGCCATGTCCTC
AATCCTCATCATCCTTCCAGATAAGTGCCTATGAGGATACCATAGAATGTGAAGTGGTTC
TCATGACCGTGTGTCACCTTCTCTTGGGATGCCCATGGCTATTTCACTATGGAGTCATTC
ACGACGGGCACATCAATCACTATATCTTCAAGTGGAAGGGCAAGGAATATGTGCTTCATG
CTATGACCCCCAACCAAATTATCGCCGACAAGACTCAAGCATGAACAAGTCCTTCACATG
TGGACCACCAAGAAGAGAGTGTCATAAGTGAAAAAAAAAGAGTTTTCATGATGAGTTCCA
ATGAGGAAGTTGTCCTCTTAACCATCAAATTTGATTTGAGGGAAGTGAGTTAAAACCCAT
CGGTGCTTCACTTTGTGCTCTTGTACGAAGATGAAGCCATTTTGAATAACACCTCACACA
TCCTTCCTAGCTCTATGTCTACTGCCATTGTATGATATGTCACATTAGTGAGAAACTTTC
TGGTGCTTAATTGAATTATCCCATACCTATGATAAGGAACTATATGCTTTGGTTCGTGTT
TTACAAGTTTGGTGCCATTACCTTTAGCCTAAATAGTTCGCAATCCATTCCGATCATGAG
TCACTTGTTAGAGTACTATATATATAGCCATGTAACCTTTCATATTTACCCGATTGTATA
AGGGGTTTCTTGCATATTCTACACCTGTACATGTATATATATTGGCCTATGGCCTTATGG
AGATACAAGTTACATATTTCCTAACATGCTATTAGAACCTTAGGGTTTTTTCGCACGCGC
AACTCGTGCTCTCAATCCAATCCTCCGTCTACATGGTCGTCGTCCGTCCTCTATGAACGG
CGCTGCTCTCCGATGTTCATCCACTGCAAGTCAACTCTTGCCCGAGCCGTCGGCTGCAGC
TCCAACTCCCGCCCGAGCCACTGGCTGCAGCTCCCTCTGCCATCCTCACCACCAGCAGAC
GTCCCCGCCGGGTCCTGCCGTCGTCCTCGTCGGATCCCGCGCAAGCTACCGTTCCTGCTG
CCATCCTCGCGGCCTGCTGCTGTTCTCCCCGGATCCCGCCGCCGGCCCTTCCTGCTGCTA
CTGCTCCGGATCCCGCTGCCGGCCGCCGCTGTTCTCGGCGGATCCTGTCGCCAGCCGCTG
GATCTTGCCGGCCCTCCCTGCTACTGCTGCTATCACACGATATCTAATTCCCGTGTGTTT
CTGCTTCCTGCTGCTGCCTCCTCCTCCTCGACCTGCCGCTGCTAGCCCTGGCTACGTTCC
TGTTTGCTGGTTGCGGTGTTGTTCGCTACTGTTGCCTGGTCTGTCGACCGAAAAAAGACA
AAAAAGACAAAAGAGAAAGAGATGTTTCCCTCGGGTCTGCATGTCCCTTGCTGCCCGGTG
ACTCCTGATGGTGTTTTCTTTACTACTCATGTCTCGCATCTGGGTCGTTCCACGACGCTT
GATGCTCGTTCGTCTATACCGCCGTCCCCGTCGGTGTCTTCCGTAGGTTGTGTTGGTAGC
TCTACTGCTGCTCCTCCTACGAGCTTCACATATGATGATTGTCGCTCTACACCGACCCCT
CTCACGACTTTCACCGGTGTATGTCGCTCTTCCCCGACACCTCTCGCGACT
