morexGenes - Barley RNA-seq Database

Contig contig_44449
Source Contig contig_44449
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_44449 (7241 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_44449

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_60480	5	2263 bp	MLOC_60480.2	Available	Available	LOC_Os03g27590.1, FRAME:+3, EVALUE:0.0, 13103.m03230 protein OsSCP18 - Putative Serine Carboxypeptidase homologue, expressed
CDS Structure of MLOC_60480

Contig Sequence (7241 bp)

>contig_44449 7241 assembly3_WGSMorex_rbca.fasta
CTACTTAGTGTTATATCATCCATTGTGATTGCCTTGTTCCAAACATGGGTTGCTTGTGAG
TACATTCAGAGTATTCATTGGCTTGCCAATGGTTATTTTATTGGTCATGCATGAAAGAAC
ATGATATGATGAAGAATACCTTGGTGACATATGTGTGAGCTAGCACACTTCCTAGGCATT
TAAGGCAGATGGCATGGGTTCACATTATCGTTGAAGATTTCCGCTGCAAATATATGAAGA
CTTGACAATAAGGCCGTATTCGAGTAAAACGGTACGTAATGGATGTAGGACTCTTGTTAT
CGAGTTTCTGTGTGTTCATTGAGCTAAGGATTGATCTTTGGGATCACCGTGCACGTATAT
TCGAAGATCACGACTTATGAGTCGGGGTCCCCATACTCTTTCACCTTCTGGCGTCAATCA
TTAGAGGCAGTGGGCGTGGGATCCTTCTTGGCTGCTCCACTCACATCATTCTGGATCGAT
CGTGGATTACTCTTCCTGACACGGCTCCTGTCATGACCATGAGACCCGAGGAGGTGAGCA
AACCACAGCCCCGGTGCCAGCCTATCCCTGCCCCAAAATGCTTCACCCGAGGGTGGCGAC
CACCCTCCCAATCATCGCATCTCGAGAGCTGTGTCGGCGACCCAATGCTCATGTCCTAGC
ACCCCCTCTCTTTCTACACTAGATCCGTAAGGATGATGCCTGGCGGCGACTGGATTGACC
TAGAGATGCGCTCCTTGGGCACACCTCTAATGACGCACAACAGCGACCAGATGCGCTCCT
TTGGCACACTAAAAACAGTTCTACTACTCCCTCCATACCAGATCAACCGTGTGTAGTACT
CCCTCCATCTGAGTTTATAAGTCCGGCACGTGTATCTAGGTTGTTAATTTGATCAATTTA
ATGATAAGCATATATTACAAAAAATATATTATTAAAAACTTTAGATGTTCTATTTTCTAA
AGATATAATTTTTATATTAAACAATAGATTTTATATAAGTCAAATTGACGACCTAGGTAC
ACGCGCATGCCTTATAAACTATGAGGGAGGTAGTACTAATTATCTGCATACTTAATTAAG
TTTTTGACTAAATAATTAATTGCATTAGTGACTTGGACGTAATTAATTGCACACGCAATT
AATTATCTTTCTATTAATTGCATTAATAACTTGATTTTAAATTAATTTTATGCTCGGTTT
CTCTTTTTTTTGCATTAATGACTTGGATGTAGTACTAATTGATTTGGCATGAAAATTCCT
TACTGGTGAATTAATTAATTACACCTGAATTAATTGTCTGCCTTTTAATTGCATTAATGA
CTTCATTTCTAAATTGATTTGGTTTTGAAAAATCTCTAGGTAAATAAATGTAATTAATTG
CATGCGTGATTAATTGTACCTCTATTAATTACATTAATGACTTGATTTCTAAAATGATTA
GATGCTTGATTTTTTATAGTTTTTATATTAATGACCCGATTTCATTATTGATTTTTATTT
AAAAAACTGTATTTAAATAGGTTTAATTAATTACAAGGTTTAAACGCTGGGTGCCAGCGA
CGTACAAATTTCTCTACTCCCTCCATCACGGTTTAGAAGACACAGTTAAACTTGCGTGCG
TTCTTAAAATAGACAAGGTTTAAGGCGTGAAAGCAATTACTCTCATTAATTAGTATTAGT
ACTAATCATGCATGCGTCTTCTTAATTTGCTGTGCACGCATTAATACTAGTATTTTCTCA
GTTGATTATACGCATTAGCATCTACACCTACTACATCTCACAACCAATCGATGGCTACCT
TGGTTCCAGAGATTTTCTAAACGTGTCTTCTAAATTGTGACGGAGAAAGTATTGTTTTTC
ATTAAACGCTGGGTGCCAGCGACGTACAAATTTCTTTTTTTAGAGTAGAGATAACCAACT
GAAAAATGTGCTGGAATGTTGCCATTAGCTGGGTGATGAGTAATAAATGAAGAAAAAAAA
TGCTGTGAGAACATGAGACCATTGATTCGTCCATATTCCAACAAGAGTAGGTTGTGTATG
CGGCTATACCTGGTCGCCCACGCGTGGGGTAACGGGATGGTACGGTGAGACGCGGCCTAT
TTAGATTGTTGCTGGCCACAGTACGTGCTCCTCGCACTCAGAAGCCACACGCCACTCGTC
ACATCGGAATGGACAAGCACAGTCGACCTCTGCTTGCTCTGCTTTCCCTCCTCCTCTGCC
TCTCCCAGCTCCGGGCCAGCTCCGCCAGCTCCGTCACCGCCGGCAAACCGGACGGCACGG
AGCTCTGGGGGTTCGTCGAAGTCCGACCAAGTAACGTTCCATCGTATCTCGCTTGCATTT
CGCACCATCCCGATCCCAAGTTTCTCCTGCTGGCCGGTCATCTTTCACGCGAGAATTCCT
CTGAAACTCTGTTCCTGCGTTTCAGAGGCTCACCTGTTCTGGTGGTACTACAAGAGCCCC
CAGAGGGTGTCGACGCCGTCCAAGCCATGGCCGACCGTCCTCTGGCTACAGGGCGGTCCT
GTACGGCTCATCTTCCTCCTGTCAAGCAGCTTCTAATGCAAGAGTTCTGGCTTCAGCAAG
AGCTAACCGTCTCCGTTTTCATCTTCATCTTCGTCTCAGGGAGCGTCGGGGGTGGGCATC
GGCAACTTCATGGAGATCGGCCCCCTCGACGTCAACCTGAAGCCTCGAAACTCCACGTGG
CTGCAGAAGGCCGACCTCATCTTCGTGGTATCCCTCCTGCAAACCGCGACGACGTCGTCT
TCTTCCTCTCGCCTCGCTGTTTTTGTTTTTTGGCTGCGATACTCACCAACCGAGTACGTG
TGTGTGTCAATGGCAGGACAACCCTGTGGGGGTCGGGTACAGTTACGTCGAGGACGACAG
CCTACTGGTGACGAGTGACTGGCAGGCGGCCACGGACGCCACCACGCTCCTCAAGGCGCT
GGCCAAGGAGCTGCCCACCCTGCAGCAGGGGAGCCCCCTCTACCTCGTCGCCGAGTCCTA
CGGCGGAAAGTACGCGGCCACACTCGGCGTCTCGGTCGCAAGGGCCGTCCGTGCCGGCGA
CCTCAAGATCAAGCTCGCAGGCGTCGCGCTCGGCGATAGCTGGATCTCGCCGGAGGATTT
CACGGTGAGCAAATCGGCCGTTCGTTGGAGAGCGCACGATCGAGTGTGTGTGTGTGTGTG
TGGAACTGATTGCTGGTTTAATTGGATCGGTGCAGCTCGCCTACGCGCCGGTGCTCCTGG
ATGTTTCGAGGCTGGACGACAACGCCGGCGACGCCGCCAAGAAGTAAACACGACCGCACC
GTCCTCTTGAATTACTAACTTGTTGCATTGCATGCTTCCCGGGGCTTTCTTTTCATCGGA
AGGGAAAACGAATTAAAAATCAACCTTGCCGACTCAATGCGCGCGCGAATTGTGGCCTCA
GGAAGGCGGCGACGGTGAAGGAGCAGATCGCGGCCGGGCGGCTGGCCGCCTCGCAGGGGT
CGTGGTCGGATCTTTTGGATTTCATTCGCTCCAAGAGCGCCAGCGTCGTGAGTGTTGACT
CTTTGACCCTTGTGCTTCTCATTTCCCCCGTTGACGGACAGCAATAATGCGATTTGCAGG
ACATGTACAATTTCTTGCTCGACGCCGGCATGGACCCGGTGGCGGCGGACCTGCCGGCGA
CCTCGTCGAGCAAAACGCAGGTGACAAAGTACTCGACGTACCTCGCCGGAAGCCAGGAGG
AAGCCGGCGCCAACACCCTCAGCGGCATCATGAACGGGGTCATCAAGGAGAAGCTCAAGA
TCATCCCCAAGGAACACGAGTGAGCTCGCGTCGCCATTCACAACACCTCGCTACCATGCT
CCAGTTTACGCCCACCTACTGACCCACATGATATGACGCGACGCCCGTGTCCCAAACTGC
AGGTGGTACGAGCTGTCAGACCCCGTCTACAACGCGCTGGTCAACGACTTCATGAAGCCA
AGGATCGACGAGGCGAGTGATCGAGCGCAGGATCCCATGAAATGGATGGATCTTCGAAAT
GTTAAACTGTACTGATCGATGCAAACGATGGCTTGTGATTATGACTGATTTACTCTCTGT
TTTCTGCTTGATCATCCAGGTCGACGAGCTGCTGTCTTACGGCGTGGATGTCACGGTTTA
TAACGGCCAGGTGAGGTGGCTGCTTCTCTGCATTGCTTTCACTCTATTCCATACCACTGC
ATCTGCATTGTTTTTACTCTCTTCCAGCTCGTAAAAAACCTCGATTAGGAGAGAACAAAT
ACTCCAGTAAGTGTTAACGGCGACGCGGACAGGCTGTTGTTCAGAAAAAAGCGCCGTCTT
TCTGAATCTGAAGTTTGGCATGAACCTTCCATTTTTAAGGCTCGATGACAACCACTCCCG
CGGGTCCATGCCAAAAGAACTCCAAAAGTTGAGAATAGTATACGATGTCTCGTGCAAGTG
ACAGCTTTATCTTTTCCCAGATTGTATTGGTCGGAACAGATCGCCAGATGCTCAGATCGC
ATCAGCGATCGGCCATCGATCTACTCGTCTCACATGTACATGGTCAACACAGTGGAGTGA
AACTTACTGCCTCTAAGTCTGGGGAAATAACACACGTGGTCTGACAGAGTCTGCATTTTT
TTTCGGTTAAGATGATGCTCTTAATGTTGTTCGTATGTTCTTCAGACTGAGCTTAGTGAA
CTTATTATCTTTACTTGTACTCTTTGCGAAGCTCGATGTGATTTGCTCGACCAAGGGCGC
GGAAGCATGGGTGCAGAAGCTCAAGTAATCAAGCCTTTCTCTCTGTTCCTTTTCTCCAGA
TTCTTGCAGGATTTACACGTGCCTCTAAAAATTATGTCTACTTATTTTTCAGATGGGATG
GGCTGAAGAACTTCCTGAGCCTTCCGCGGGAGCCTCTGTACTGCGGATCATCCACGGTCA
CCAAGGCCTTTGTCAGGTCCTACAAGAACCTGCATTTCTACTGGATCCTTGGCGCTGGCC
ACTTCGTAAGTCACATGTTGAGCAGGCCCTTGATTGGACATAATATGATTTTTGCTTATT
TCTGGCGTGATGTGTGCTTGACAGGTGCCTGCCGACCAGCCTTGCATTGCGCTGAGCATG
ATCGGTGGCATAACCCAGTCTCCAGCCAGCTAGGCGAGGACACCCGGAGCAGATCCTGTT
TGTCGGATAGGAAAAGGACATTGACGATACAAGTATAGATAGAAAGCTTGCGTACTTTAA
AGGGCGATGAAATTGGTTGTAAGGTGCATTGGTGTGTGAGTGGGGGTTAAAGCTGCTCCG
TTTTATTCTCCGAATAAAGATGACACCTTTCAGAGCGTCTTTCACAATTTCAGTGTGAGA
TTTGTGTTTCCTTTTTCACGTACATTTATAAAACTGCAATGTTCCAAACAGGCCTAGTGC
GTACGAGAAAAAAAACTGCTTGGTTGCATTCGGGAGGCTTGACTCGCACGTGCACGAAAA
AGAAATCTGAAGCCTGACTCGCTAGGAACGCTCCAATCAACCGATTGGAGTGAGCCAGGC
ACGGAGCGAGCATACAAGCATAGGGAGAGGGACAAATTTGTTTATGAAGGAGGGCAAAGT
TCATATGAAGTAATTTTTTTACCACAACAACCACTATCATAATAGAAAAATCAAATTGTT
AGACAAGGTCTAGCCCCCCTCCCCCCCTAGAATCGTCCCTGGAGTGAGCGAGACTAAGTC
GAGCGTAAAAAGAAAAAGGACATGCGCAACGTTGCAGGTGGGCGGGTGTTGAGATGACGG
GAGCCCGAAATGTGCCGGCGTGGAATAGTGCGGAATCTAGCCTCCTCCCTCCCCAATTTA
CTCGCTCACATCTTGCCCATCCTCAGTTCCTGGCACCAGCAACGACAAATCAAATTTATG
CAAGCGGCGGCGGTGACGGTAGCATCACTCTCTCGCAGCAGTAGCTGATTCTCCCCATCT
TCTTGGCGTTCTTGAGCCAATTCCCACAAAACCAACGTTTTACATGGTATCAGCCTAACC
TAGTTCCTCACATGCCGCCGCCGCCGCCAGCTCCGGGTCCATTCCCGCGTCGCTTGCCGC
CCTCCTCAACCTCCCGCCTCGTGCTCTAGCTCCGTCGATGCCCCACTTCTTCGGCACTAC
CATCGTAGGATCCATGTTCTCGGCTCCGATCCCGTCGTCTCCCGCGATTGACGTGTCTAC
GCTCTCAGTCACCTCGCAGACGGTCACGCTCGCGGCGCCACCCGTAACCTCCATTGGCTC
GTCCCCGACACTCGCCCTCTTCCCGGCGGCCTCGGGGGCCCTTGATGCCCTGCCCACAGT
TGTGGCCCCCATCGCCGCTGCGCCGCCTGCTGCCCCCGTTGCCGATGCCGTCGCGCCCTC
CAGGCCGTTCCACTTCGACAACCTGATCACCATCCGACTCACGTCGGACAACTACGTGTA
CTGGCGTGCGAAGGTTCTACCGCTGCTCCGCAGCCGCTCCCTCCTTGGATATGTCGATGG
TTCCCTATCGTGTCCTCCACAGGTCATCGTCATTGTCCATGGGCAGGCCATCAACCCGGA
ACACCGTGTGTGGGTGCAGCAGGACCAGGCTGTCCTCTCCGCCATCCAGGGTTCACTGGG
CGACGGGGTCGCCGACCTCTGCCTCTTCGCTGCCACCTCCATGGACGCCTGGACGACCCT
GGAGCACGCCTTTGCCCAGGTCTCCACCTCCCACTCGATGTCTCTTCACAACAAGCTCGA
CGACATCAAGAAACTGCACTCCTCCGCCACGACCTACTTCAACAAGATCAACGTACTGGC
GGACACGCTGACCTCTATTGGTCGGCCGCTTCACGACGAGGAGTTTGTTAGTTATGTCAC
CAAGGGCCTCGACGCCGAGTACGACAATCTCGCGGAGGCCGTACACAACGCTAAGCCATC
GATGCTTCCTCACGAGCTCTACTCACACCTCCTCTTCACCGAGCAGCGCATCGAGGCTCG
CCGCTCCTCCGCCACCATCGTCGAGCTGCCGGTGGCCTACTAGGACTCTCGCGGCCAGCG
CCCTCCTACGCCCCCTTCTGCCGGCAAGGCCGGCCCGCCCCCTGCACTGACCTCGGGTGG
GGGCCCCAACACTCGTGTGTGCCAACTGTTTGGCCGTGAAAAACACGTCGCCTCCAGGTG
CCACCGACGGTTTCAGAAGACCTTCCTCGGTAACGGTAATGACGGCAAGGGCAATGAGCG
CCAGTTTGCCATGGCCACTTCGTCCCCCCCCCCCCCCCCCC