Map Locations of contig_44419 (9391 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_44419

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_60457 1 1985 bp MLOC_60457.1 Available Available LOC_Os03g58910.2, FRAME:+3, EVALUE:2e-168, 13103.m06469 protein expressed protein





CDS Structure of MLOC_60457






Contig Sequence (9391 bp)

>contig_44419 9391 assembly3_WGSMorex_rbca.fasta
GAAACGCAAAGGCTTTTTGCGTTTTCTCGATTTTTTTTTTAATGAACATACAGGATGTAG
TTTGCACCAAAATGCTGCTGCACACTGCACACTACGCTGTACTCATCAGTCTTCAAAATT
GACTGCAAGGGTCACATTATGACTTCACTCATATCTGCTGGTAACAGGCTAGCAGCATTT
GAAGGTTATATGTTGTAAATTGTAACATACTTGATATTGGACATGGCATATTTTTAAGTA
TATACTTTATTTACCAATTCCGCAACTGCACCAGCTGCATATGAAGTTTAGATTCTTTTT
TCATAACCTTGGCTTATGGAGTAGTATATCCTGAACTTTTGTCCATCTTAAGTATCGTTC
TCATGCACCTTTGTTGCTTTTGTATAGGTTGTGCATCGTGAAGCAATATTCTATGGTACG
TCTGACAACAAGGAGAAGGCTACTTTACTTTGTGGACTGTTACCATATATGCAACGTTAC
ATCTATAAGATGCATAGAGATGCATATATCAACTTTCAGCAAAATGAGATCATGAAGCTT
AGCAATCTTCAAATTATTGTTGTTGAAAAGTTGTTCCACAAGTATATGCTTAAAGGACAT
GAGAGTTCTTCTAAGAAAAGATTCAAATGCCATTGTCTTCTGCAGGTTAGTATCTTTCTG
TTCTGCCTTTATGGTAACTAGTGTGAGTGATTACCTCCTTGCAAATCTCTTGTTCCCCAA
TATTAACTGCATATTTGTTAGGTAATTATGATGCTATTGTTTGCTTAGTTAGATGGTTTA
TTCTCAGGCCCCTCTCCTATAACACCATTGGAGAATATAGTGATGTGCCACTGGATATAC
TGATGTACTTCTGCATCCAAATAATGCTATAACTGGCATTTTCCAACTTTGGTTGCTAAC
TATACCTGATAAATAGTTAAATTAAATGTAATGTGCTGCCATTATGTATCAACCATCTTA
TATTTTGTCGACTTCATTCAAAATTAAGCCCCATAAAACTATATATGTGACCGAGGCATT
GCTTGAATGCTTGACGCACTTGATGATTAAGGCTTGCTCTGTTATGTCATCTGCCATGAG
CTTTAAAGTTCATTTGATTTGATCTGTTATTTATTTTCAGGGAAATATTCTGTATGCTAC
GCAAGAAGCTGATTCCCATTCATTGTTTCTGGAAATTTCTAGAGTTTTCTTTGATGGATC
CCCTGATCTGCACTTTGCGAATTTTCTGCACATGGTCAAAACCATGGCAGAATCTGGCAC
CTCAGCAGAACAGGTTGAGTCTTTTATCGTTAATAATCAGAATGTGCCTGCGTTGCCTGA
AGAGGAAGCAGTTTGGTCCTTTTCTTCCTCGTTTGTGCCAGAATTTGTACTCGACCGAGA
TGTTAATTCCAAACCGGTTGAAAGCTCATCTGCCTGTGTTCTCAATATTCACAAACATCA
GAGGTCAGATGGAACTGTTTCAAGCTGGCCACCTAATAATTGGAGAACAGCTCCTGATTT
TAGAACATCTCGCATGAGTCAGCGTGGACCCCTGCAAGATACAAAGGTGAATGATGTTGA
GTGCACAAATACAAAAGATAATTGGTTTCCTGGATCCCTACAAGATACAGAGGTGAATGA
TGTTGAGCTGACAAACACAGAAGATAATTGGTTTCCTGTTCAGCTCGATGAGGATTGGGT
TATAGAAGAGGATACGAGTCTAGAAAGCAACTTACAAACAGAAAGCACAGTGGCAACATT
GGACCAGCCTCAGATGTTGATGTCCATTAACTCCGAGAGTGCACCTGCTTATTTGGACTT
GGGGACCAGTTCACCTAGCGAGGTTGTTGAGACCGAAATGCTCAATGCTTCAGAACGCAG
GGATAGGATCCGCGCAGCACAGCTACTAAGAACTGGCAGGGTTGGTGAAGGTGTAGCATA
CAAACATTTTGTTAAGCGGCTAGGGACCCAGAATGTCAGGTGGGTGAATGCAGACACCGA
AACCGGACTGCCCTATGATATTATCATCACCCGTGGGGATAATCGGATAGAGTATGTCGA
GGTGAAGGCAACCACAACTTCAAACAAAGACTGGTTCTACATTACAGCAAGGGAATGGCA
GTTTGCATTGGAAAAAGGGGACGATTTTAGCATCGCCCGTGTCATGGTGTCGGGCGAAAA
GATGGCAAATATCAAAATGTTGAAAAACCCGCACAAACTTTGTCAGAAGAAAATGTTGCA
TCTTGCTCTGTTGATGGCCCGCCGGCAGTGAAGCAAGCATGGACGGACTATCTGCATGAG
ATTGAACTGATTGCGGGTACTTGTCGGCGGTAATCACTGAGATCTCCATCTCCGCTGAAC
CCTTAATAGGAGAGACAAGCTGAGTTGGCTGCTCCGACCTGTCAGTCCATGATGCCTCTC
TTCTGTGTGGAGAATGAGATGAGATGAGTCGAGGTTGCGAGATTATGAGGCAGCTCCAGA
TCCCTGTGTGCATGTAGTGATGTCTCTGCTTTCTGAGGCAATGATCTTGGTGATGGGTCT
CTGGATCCGTGTTACACATGACATCGTCGTCTCTGTGCCTGGAGCCTCTGCTCCACTGAC
TTGTAAACGGTTGTAATAGTGGCTACATAACCATAACTGTTGGTTTGTTTGATTGGTTAC
AACGAAACTGTATTTGATCATAACAATAGTCAAGAATTGAAACACCATTGCAATAGTAAA
GAAGTTAAACATCGCTGATTCCATGTCTTGTCTGTTTTGTATACGTTTTTTCACTATTAA
CATATGAGTATGCTGGCGAGTAATAGCTTCATGCGATGACGTTGACACTTGATCACTCGG
TTGCTGCGTTGAACCAAACCAACCTACAGGCCGGATGCTAGCCCATGCCGGTGGATTTAT
TTTGAGAATATCACTTTGTCGAGGTTGAGCGATTTATTTCGAGAATATCACTTTGCCGAG
GTTGAGCACAAACTGCCTGGTTAACGTATCTACTACAGCGGTGATCGGCCGAGTTGAGGG
TGGCTGTGGCGATGATGCTGAAGACCGACCAATGACAATATTGAGATTGAGCTGTTGATG
ATGCGGCCTGGCACGGCAACATAGGTGCGGTCGAGGACTGCGTTTAACGTAGTTACTCGT
ACCTTACCACAGTGACGGGCTTGGCCCATTAAGCTTATGTAACAACGACCGGTCGAGTCA
GAGTTGGAGAAGATGTAGTTGGCTGTGGCGACGGTGGCAGAGAACGAGCGATGACAATAC
CGAGATTGGGTTGTTGATGATGCGGCTTGGCACGACAACATAGATGTGGCTGAGGACAAG
ATGGAGCTAGAATAGTCAACAATGTTGCTCGTCGTGGCGGCACATGCAACATCAACAAAG
AAACTTTGGTGGGGGTTAGGGTGGAGTGGGGAGGGGAGGGGAGCCTCCATCAAAAAAGGG
ATTTTTGATGTACGGTTGGGATGACAGGCAATGACGGACTTAGGCATGGGTTAGGCCCCA
GGCGAACTGGGTCAAGGCCCACACAACCTTCGTCGACTGTAGCATTTAATGTAGCTATAG
TACACCATACGAAGGGGATGTGCCTCACGCTCCACGCGTCGCCCTGTCTGCCTGGGGCTT
GAATCCGCCCTTGGTGACATGGACTCAATAAGGGAAGGGGCGGCGAGGCAACAACCATGG
GCGTGGGTGCCAGGAGAAGATAGTAGGGGCCCTTACAACGATGCTCATGCATGCTGGGTA
GCCCACTGAATCCCTTGTGGGATCGATGCAATAAGCGGCGTAGGAACTCCTGCATTTGAG
TGTTTTCAACCTCAAGGTGAGATTTGACCTGTTATTCTAGCTCGATCTTCTGTGACAGCC
CACCTTTAGTAGCAGTAGCCTTTCGGTCATGCATGTGACATACATGAAATAGAGAGTTTG
AACCTTGTGGTTCAGCTCGAGAGAACTAATCTAGAGAATGGCAAATCACGGGAAGACAAT
TTCTATGCGGAAACCAGAGCACATGTTTTTTTTCTAAAGCTTTCTTCAAAACTCAAAGAG
ATATTTAGACTTCTACCTCAAAACTCGGTATAGGTGTCAACAATATTTTCCTCTCCCTTT
CGTGAAAGCGGTGGGTAGGGGAAGAACTCGAGCCCTCTATGATTCGCTGACAAGCCTGTG
GGTTCGACCCCCCTCTCGGCACTCTGACGGCCTATGGTGGGGAGTCCTTGTCCTTCGTCT
CTGGCTAATAGTTGAGTTTAGGGTTTTAGTCCCCACAGGTGCGACGCTAGGGCAGATGGT
GGCACTTCATCTTCGAGCTGGTTCGACGAGACGGAGTCGACGTAACTCCAGTGCAAGTTC
CTGCTCTCCTTGGCATAGCGTGGTTACTGTTTCTCGCCATGTGCTCACGACAGTGAGATC
TGGTATCAGGTGCTTCAGATTGATGCAAGGGTTTCAACGACAATGACTATGACTCCCTAG
AGCTAGTCCTTGAGGGAAGGTGCACGAAGACTTCCGACTATCATCAAGACGGTTAGACCA
GGTCCGACAGGGGAGCGTTGACAATACCATGTATCAGTGATACACCATAGGACCGAAAAT
TGGCCCGCCAGGCTGTACATAAGCCCAATGTGATGGCCTGGCTTAATAAGGATGTTAGAA
TACTCATATCAATAAGGACTTCCTTCTTTTCTGGGAGCCCATTCGAACAGAACTCTCAAG
TTAAGCGTGCTTGTTCTATGATGAGTGACCGATCGGAAAGTTGGTTTCGGATGCGCACGA
GTGAGGGCAAAGTGCATAGAATAGACTAGTATTGATCCGTGGGGCCAGTCTAGATCCCGC
TACGAGTAATGACCATCGGCCGGTGTGTCTGGGGCGTTACACCCGCCAAGCCATAGTGCA
ACGTAGGCCTGCTACTCGGCCGGTAGGCCTCCTTATGATGGAGCCAACAACTTGCACATA
AGGAAGACCCTCGAAGATCTCAGAGGGTCTTCGAGTTGGCCTAACCAACCTAAACTCCTG
TAAACCCTAGGTCTTCTATCTCATATATATAAGCATGAGCTAGGGTTAGTCGATAATCAT
ATGATATTCTAGCATCGTATGCGATCCCTTTCTATCTCAACATTGTACACCAGACCCCCT
CAGATGAGGCATATACACCATCAATCAATCTAGCAGGAGTGGGGTATAATTATCTCCATC
ACGAGGGTCTGAACCTAGATACTCCGAGCTACACGCAACACCTGTCGGGACTACTGTCGG
AATAATGAACTGACAAGCGACAACAACTGCACGTTAATGACTCATTCTTTTTTTTTGAAC
GGGGAAAGCCTGAGCGGCCTTTATATTTCATGTGAGAAGGCAGTTACATCATTAGCTAAT
GTATCTATGAGGAAACCAGGAGGCTCCTCCATCCACTTTATAGTTCTAGTGGGTTCAACA
AACCTAGCTAGGGTATGTGCTACCACATTTGCTTCCCTTGGGCAGAAGGCAAACTGAATC
AAAACAAAATTCTTTGCAAGGAAAGAGCACTCTTCGTAAACTGCCGCCGCTGGTCCAAGT
GAATTGCCGTCGAGCAACATGGTGTCAATCACGTCCTGGCAATCAGACTCCACAATGATC
TTTTGCACACCCACCTCGCTAGCCATGATAAGACCATCTCGTAGAGCTCTTGCTTCCGCT
GAACTGACATCTTCAGCAAATGATATAGCACTGCATGAACCGGCAATGAACACTCCTCTA
TCTGATCGCAACACCGCCCCGGTGCTACCCGTCCCCGAGTCTTCAAAGAAACCAACATCC
ACATTAAGCTTGTAAAGACCATCAGCCGGCCGTTACCACCCATGGCGAACAACACCTGGA
CGCATATTCCTTGCCCTGACAAAGTTCTTCCCAAGTGTCGATATTGCATGCGCGGATCTG
GGTGATTCAGCGATATGCTCACCATGAGTGAAACTCCTCCTCTCCCACCAGATGTACCAG
ACCGTCGTTGCGATCAGCTCATCACAGCCAACATCCGAAATATTTGATTTGATTGTGCTC
TTGGAGAGTATCAATTCAGATAAAACCCCACTCCCGTCTTGCTCCAGAGCGCAGACTTGA
TTAACCAGGCTCGATAGCCCTAAAACCCTCCAGATTTCCTGCACTCTAGGGCACTGGAAA
AAAACGTGCTTTATACTTTCACAATCCATTGTACACAACGGACATTGGGAGCTGATCATG
ATGTGCCGATTTGCCAAAACCCCATAGCATGGTATAGCTCCGAGTAATGATTTCCATAGG
TGAATTTTTATCTTCGCGGGTAGCCTTAGCTTCCAAATGGTTCTCCAAATAGGGTTATTA
CCTGAGGAATGATTTGTGTTCGTCCTCCTCAACTTTCGCCCATGTTGGTTATCCCATTCT
TGATGATACGCCGATCTAACAGAGAACATGCCGCGCCTGTCTGGATGCCAGGATACGAAG
TCGTCCATCATCCCCACCGCAAGAGGGATATTTAGAATGCGTTGTGCATCAACTGGCCAG
AAGAGATCCGTTATGAGCTCCTCATCCCACGATCTGCTGTCCACATCTATCAGTTCAGAT
ACTTTGGTCAGTACTATGTTGCTTCGTGGAGTCATAAGTTTTTTTTGGGGCTGCTTGGTA
TCCACGGGTCTTCCCATATTTTAATGGAAGCTCCATCTCCCACACACCAGATGATGCCTT
GTCTGAACGTTTGTAACCCACTCCACAAACTCTACCACGTATGTGAGCTCCCCTTCTTTA
GGGTACAATTGAGAAGATCACCATCAGGGTAGTATTTTGCTCGAAGCACCCTTGCACACA
ATGAATCCGGGTAATTTAGGAGCCTCCAGGATTGTTTCGCCAGGAGAGCTAGGTTAAAGC
AATGGATGTCCCTGAAACCCATGCCTCCCTTCTCTTTCGGCACACACATCTTCCACCATG
CAAACCAGTGCATGTGTTTCTTCTGCTCGTCATCACCCCACCAATACTTTGACATTGCCG
ATGTAATTTCATTGCATATCTCCTTCGGCAGTTTGAAAACAGACATTGCATAAGATGGAA
TAGCTTGTATTACAGCTTTAAGCAATGTTTCTCCCCCCCCCACCGAGAGAAGTTTCTCTT
TCCACCCTCTGATCCTGCTCAGAATTCTTTCAACAAGATGTTGGAAGCAATCAAATCGAT
CCACTCCGACAACTGGCGGCAATCCTAGATATTTTTCCGAGAGAGCTTCGACCATAATAT
TAAGTGTGGTGCAGATCTCCACTCTAGCTTGGACGGGTGTGCATGGGCTGAAGAACAATG
CTGATTTGGCCTCACTGACTAGCTGTCCCGAGGCCATGTAATACTCGTCTAAAACTTTCC
GGAGGGATACTGCATTTGCTTGGTCCGCACGCATCAAGATAAGAGAATCGTCGACAAAGA
GGAGGTGGGATACTGAGGGAGCATCTCGGCATACTTTTACCCCAGTAATGTTACGTGCCG
TCTCCTCAAAAGCAATCAGGCTAGACAAACCTTCTGCACATATAAGGAACAAGTAGGGCG
ATAGTGGATCACCTTGTTGAAGGGCCCTCGTTGGAGCAAAAGATTCCGAAAGCTCATCAT
TAATACGGACTTGATACTGGACTGAGGAGATGCATTCCATGATGAGGGCCACCCAGTCGG
CTCTGAAACCTAGCTTGATCATCATCTTCTCGAGAAATCCCCACTCTACCCGATCATACG
CCTTGTGCATGTCCAGTTTCACCGCACATGTTCCATACCCAGAGGTCTTCCTCTTGATTG
CATGGTAGGACTCGAAGGCCACAAGGAAATTATCGGTAATGAGCCGTTCAGGAACAAAGG
CACTCTGATTAGGGGAGATGATATCAGACAGAACCATTTTCAGTCTCCCTGCCAGCACTT
TGGATATGACCTTGTATAGGACATTGCAGAGACTAATAGGTCTGAATTGTGTTACAAATT
CAGTGTTTTCCACCTTGGGTATAAGAACTATCGTCGTGTTGTTCCATCCCCTCGGGATTT
TCTTGGTTTGTATAGCCTGCAATACCTCATTCACCGGGTCCTCTCCTATGATGTGCCAGA
ATCTCTTATAGAAAACAACATGAAGTCCATCAGGACCAGGGGCTTTGAAATCGCCAATGC
TGTACAGGGCTTTCTTCACCTCATCTCTGGTGCAGGGTTTATTCAGCTCCGTGTTCATCT
CTGGTGTTACCCTAGGGTCTACTTTCTGAATGAGATTGTCATCATCCCCCTGTACTCCAG
ACGTAAAGAGAGTGGAAAAATACGCTGAGATGTGCTCATGTATATCATCAAGATCCTCCA
CCCAATCGCCATTAGGCCCTTTGGTTTTCATGATTGAATTGCGTTTCTTCCTGCCATTAG
CTGCTCGGTGAAAGAAACCCGTGTTCTGATCCCCTTTTGCCAGCCAATCGGCTCTACCCC
TTTGCATCCAGTAGAGCTCCTCTTTCTCGAGCATCTCCTCGATCTCAATATGGATTTTCT
GCTGGTGAACTATTGCCTCGTCAGTTAACGGTCCCGACAATACAATATTCAGCTCAGCTT
GCAACTTACGTAGCTTCGACCTCGGTCCCTTCAATGTATTTTTATCCCATTGATGGAGGT
CAGCGTGCACCCCCGCAACTACATGTGCCAAGGGGCCTAGGCCTTCGTCCTTCCTCTTAT
TCCATGCCGCCTGAACAATGTTTTCCACACTTTCCTCTGCTAACCACCGAGCCTCAAACT
TCCGAGTACCCGATCTCTTCCTTTGCTGCAATATCGTACTATGTTCCGTATTAATTAGAA
TAGGACGATGATCAGACTTGTCATAGTCCTCATTGGAAACCCCATAGTCCAGGAACATAT
CAGCCCATCGCACATTGCTCACCGCTCGATCCAGACGTTCGCGGATATTTCCTCGGTACC
AAGTGAAGATATCACCCACATAACCTAGGTCATCCAAGCCGTAATCGGACAACGCATCAC
TGAAGCCCCGTAAGCAGCGAATCGGTCGTGAAGCACCCTCTTCCTTCTCATAGTTGTGCA
GAATTTCATTGAAATCACCCGCTATGAGCCAGGGGAGACTTATCATCACATGTAGCTGCC
TTAGATAGTCCCAGGTGAGGTGTTTTCTTTCTCCACTAGGTTCCGCATATAAACCCGTGA
ATCGCCATCCATCCGGGGAATGCTCATTGATGCGAATATCGATGAAGTTTGAATGTATCT
CCAATGACGTGACTCCCAAGTTAGCTTGCCATAGCATCACTAAACCACCACTTCTTCCAT
CGCTCTCCGAGACTGCCATTTGATCAAAACCCAGGCGTCTCATCAGTTTACCTGCCTTCG
CTTTGTTCAGATGTGCCTCAGACAAGAAAAGCACATCTGGTCTTTCTCGCCCGTGGATCC
CCACAAGCGCACGCACTGCCGCAGGCTTTCG