Contig Data
morexGenes
Links



Map Locations of contig_44387 (8984 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_44387

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_60439 2 4178 bp MLOC_60439.1 Available Available LOC_Os03g08820.1, FRAME:+1, EVALUE:0.0, 13103.m01021 protein expressed protein





CDS Structure of MLOC_60439






Contig Sequence (8984 bp)

>contig_44387 8984 assembly3_WGSMorex_rbca.fasta
AGGCAGCGGGGCGAGAAGAGTCCTTCAGCCTCGAGTCCAGCGGCCCGCCCGCCTTCGCCG
CAATCATAAGGCTCACCCCCGACCTCGTCGACGAGATCCGGCGGGCGGAGGAGGCCGGTG
GCGGCGCCCGCATCATGTTCAACTCCAGCATCAACCCCGCGGAGAACGTGAGCTCGCCCT
CTCCCTCCCTCCCTCCGCCGTTTAATTTTTCTTCTTCTTTTCTTTTCCCTTTTGAGTCGG
TTCCGAAGTTTAACCTAACCAGTTTGGATGTTCTACGCATTACGGTTGTTTGGTCGACAG
CGCCCCTCTCTGTTTTTCTCCCCTCCGTGTCGCTGTTCCTGGGTCTGGGCTAGGTTGATA
GGTTCATTGTATGATTTGGTTTTGCATTCAGATTGCTCGAATTTACTACCTAGTACTTGA
ACTTTGAACGGTTATCGCGTATTGATATCTTAGCTCGGCTCATGTTAGAGTTGCAATTTT
TCATTTGTCACCGCGTGTGATTTTTCCGCTCCGGTGCTCCGGTTCTTAGAGGACGATCTT
TTAATCGAATCCTTTCAGTATGTGGTCCGGACGAGTCTGATTTGGCTCAAGACTGCCTGC
TCATTGTTGAGTAGAGTTCATGTTGTAGTTTATCCAAATTACTTGTGCAATTCGCATTTC
GTTTTGATATGCTGGAGGGAAATGGTCTGTTACGTTCTCATTGGAGGCTTCAGTTCAGTT
GTCTGGCTGGGGATTAGTTTGGTGACTTCGGGCATGGGCTCTTAAGTTTTTACATGCATT
TTCTTTCCTGCCTAATATGATTGTACTTAGCCTTTATGTACAGTGGGAGCAAGTGCATTG
TTTGTTTGATGATTCTTTTGTGTAGTCCGAGCAGCATAGTCGAAGTGACATACAATCTGA
TCTGAAGCTGTTGAAATTTAACTGTCCCTCCATAGTATATAACATATATATATTTTTTTT
TTGCAAAACAATCAACTACCTATAATTTTATTATTTTGTGCAGTGCAGTGGGTTCTTGGG
TTGGCACATTCTTTGCTGCAAGCTTAAGATTAGTTTGGTTTCTTATGTTGTTTATGATCG
TTAAAAGTTTTCCTTCCAGTAACGATCCAAACTTTAGATTCCAAGTTCATGAGGCCCATT
TGAACAATTTAGTTGAAAACGGTTGCTGGAATTTTTAGTGCTGGTGATCTCTTCAAATCT
TAAAATTAATTATACACAATCAACTGTTTTATGAGATGCATAAACTGCAAGCTGGTTAAA
AAAAGAGGAAAATAGCAGCTAGCTGGTATTTTGGGTATGTGATTCTTATGTTTGTACATT
ACATGTCAAATCTACTGAAACTGAACTCTTATGTCCGGCTGGTTATGTCTGTGGATGCTA
GTTGTACTATTTTGTTTTGTTTGTAGAATAAATATCACTTCCATAACATGTTGCTTTGAC
ACCACTAAATATTCTGGTGTATCTACTGTAGCATGTTTGTTTTGTTAAGTGATAAGCTTA
CTAGAGATATATTTGTGTATTTGCGCTTTACATGTGTATGTAACTTACTTCTTATAGTGT
CCAATAGATATAATTGCTTGGTATTCATGATTGCTTCGTATGTGGTTTGATGCGAAAATA
CATACATGTTTTACGTACATACGAACAGAACAGTATGATCTGTATTCAAGTATCCACTGA
TGTAACTTTCTGTTGTTTAAGTAATAAGTGATACCAGTACCGTGGTACTTGTGCACTGGA
GTAGCTTGTACCTACTGGTTTTATAACCGATATGTCTTACTTTGAAAGAAATAGTACCCG
TGGTTTTCGGTATCATGCAAAGCCTGTGCAACTTGGGAATTACTCTTGTACATTTGACTT
GTTTCACTGAAGGCTCTTTTCTTGGACTAGGTTATCGATGTTGATGGCAAAGAATTCAAT
TTTGCATGGGCATCCGAACGTGGTGAGTTATGTGATATTTACGAAGAACAGCAGAGCGGA
GAGGGTGGAAATGGCTTGCTTGTGGAACGTGGATCTGCTTGGCGCAAGGTGACTGTGGAC
CGCACTTTGGATGAATCGGCAAAGAACCTTGTGAAAGCACGCTCAGAGGAGGCTGAACGT
CTCGCAAAATCTCGAAAGTTTGTCTGCTTTCCCTGATCCATAATTCTCTTGATCACCGAT
TAATCATCATCCTGATTTATAGGGTTCTTACGTCTCTTCTAAGTGCCGCATACAAGTCCA
ATTTTCTACTTATGCATCCTTGTTTAATTGTCTGTTGCCTAGATCAATTGTGCTGGACCC
TGGGAATCCATCTGTCAGGAATCAGGCCAAGTCAATGGTTGCAGCCGGAGAAGGTTTGAA
CTTTGATAGCTTGTTTTGTTTTTCTTGAACGAGTTCATTATTCATGCGTCCATAGTAGAA
ATGTGTGCTGTGCTCAGTTTTTCTATGTGCAATCTAAATGCTGGTTTTGAGTTTGATTAG
TGCCTAAAGTTTGCTAAACTGTATAACGGCTAAAGTTCGTAAGAGATTGTATAATTTATT
GTTGTTATCTCTTCCAGGTAATATGCGGAGGGGGAAATGGAACCAAAAGAAGGACAATTT
CAATAAGAAGCAAGGTTTCAATTACTGTCTGATCTTCTCTTTGTAGTACTTTATTCTTTC
TATGTAGATACATGTCCTACTATTCAACCACTAAAAAACCCTGCATTGCCACATTCCTAA
CTTTGTTTTTGTGGGTCTACTCCAGCTACTGTCATTCCAACCAAATCAATTTCTAAAGTA
AAGCTGCCTAACAGTATTCCCAAAGGAAATATCTCGACTTCACCTGCACCTTCTCCTGAG
CAACCTGGACCAAGCCTTCCTTCATTTCTTTTTGAGTCAGATGCAAATAATGAAGTCATA
GTACCTTTTGATTTGAACAAAGAGGAGAACAGTAAATTTGAGAAAGCAACGCCAAATAGG
ATCTCTCGAGGACTAAATCACAGGGCAAGTTCTGTTTCTGCAAGTGTTGATGATAATACA
ACTGATGTGCGAAGCCTGCTGATATCTATACTCTCAGAAAATCCAAAGGGAATGAATTTA
AAGGTAATCCCCTCCCCCTCCCCTGTAGCATGTGCAAATATGAATAGGAATTCAGAAGTT
TTAAAATGAACTATATGATGTACTGTGGTATCATCCATAGTTGGCTTGATCATATGCTAC
AAATGCGGTTCATGATCTTAGATGCCTTTGTTCTTGTCATTCGGTTAGTTGCCTGACTCC
CCGAGGCTTACTCCACAAGCAATTTCCTGATGTTTCTCTTCACGACATGTTGTGAAATAT
ATGTAGGCCTTGGAGAAAGCTGTTGCAGATGCAATTCCAAATGCTTCAAAGAAAATAGAG
CATATCGTTAAGAATGTGAGTAACAAACATTATCCACCGCCTTTTTTCTCGGTAAGGAGA
GTTGTGATGCACACTTAACATATTTTTATTTATCCAGGTTGCAGATTACCAATCATCAGG
GAGGTATTTGCTGAAACCTGAACTGGAAGTAGAAAACTCTAATCATGCATCTGGCAGTGG
AAGGTACTGTTTTTCTCCGACAAGTTCAATTCCGTACTTCTTGTTTAACTGGGTATTCCC
TTCATGATGCTCTCTCCGTAGTTTTGTGTATACTCCGTAGTTATTTTCTGCATGTTTGCT
ACTTCTGCCCACAAGCACCTCAGCATCCAACTGATGCATCTAACAGGACTATCGATGAGA
ACATTGAAGAAATTGCTCCAAGCTTAAGGATAGATGATCCTGATATATTTGAGAAGATTG
AAATTGGGGGCTCCCCGGTTTCAGCTGCAGGAGACGAAAAGGTCCATGACAGTGATGCTA
AAGCAGGTACCTCTAGTGAGAGTGGAAGTGATAGTGACAGCGACAGTGACAGTAGTGGCA
GTGGAAGTGATAGTGGGAGTCAGAGTAGAAGTGCTGGAAGCGGAAGTGGGAGCAGCAGCG
ACAGCGATAGTGATGCTTCATCAAGCAGCAAGGAAGGATCTGATGCATTTGTGGATATTA
CAAGTGATGATAACAAGCCAGATACAGCATGTAGGAAAGTAGCAGATGAACTGAAGTTGT
CTTCCTCACCAGTAGATTTTCCAGCATTTGATGGTGATGATGAGCAAATTGATATTGGAA
CAAATCTGGATTATAAGAGTGCATCATCACACATTGATCTGAATAATTTGAATGTCGACA
ACGATGAGCCGGCATATGCTGGTACAGCAACTGAGAAATTCGGTGCAAGCAATGTAGACA
TGCCATCAGAATTTCCAGGAAGAGAAAACATGGTGAGTACCAGGTTAGATCAAAGTATAG
TTGATGGCAAGTATCCTGCGAGTAATAAAATATCTTATGAGGATAATCATTTTGATGACC
CCTTAGCAGCGAGTAGTGAGAACTTACCTAATGAAGAAGCTATTCAGTTCACGGAGCAGC
ATGATAGCAGAAGAAATTCAGCCTCAAAGGATGGAACAAACCATGCGCCCACAAGAATAT
CAGAGAAAGGTGCCAAACCCACGTTGAAAAGGTTTCCTGGTAATGAGAATGCTATTACAA
AGCCAGAAAGTGCCAAAAAGGCCAAGGTTGACACTGCCTATCCAGGAGCTACTGGTTCTT
TATCAGCGCAGAGACAGAACTTACCTCCTGATAAGCATCTCAATGAGAGGTCAGGCATGG
AGACAGGGAATGTTGGATGGGACACACATACTGATCTACAGGTGCAAGATAGTAGTCCTA
TGAAAGGAAGGCCTGTGACTCCTGGAGATCTACAAAAGATAAATCAGGGTCAAAATGTGC
CCATCCCAACAATTCACTCTGAGGGAAAACAAGAAAAGATCACGAAAACAAGCTCTAAGA
AGAAATTAGATAAGGTGCAGAAACCTTTGAATAGTATGGATGGTAGCCTTGGGAATGTCA
ATTTTGACGACACTGATGATTCTGCTGCAAGAAAAAGGGGTAGGCATGGGGGATCTTCTC
TTGATGGGAAAAAGCACAAGCGCTCAAAGGATCCTAATATTGATGCAAATCCCATGAATT
TGACCAAAGGTGTCAAAGGAAATGTTAACCATAACATGATGATGCCTCTCCCTGAATGCA
CTGAGACTAATGGCAAGCCACCAATTTTGCAAAGAAACAGTGCTGAGAAATCATCTCCAA
AAAAGGTGCTCCAGAGAGAGCATTCTGATCTCGAGTTGGGTGAACTTCGTGAGGGTCCTT
TGGAAAATGACAACGGGAGGACAAGGAAACAATTTGAGAGGAATAGTTCTTCTAAGTCGC
TTGATGGTAAAGCAACTAATGTAGATAATTTCTATCCCAGTATGAATAGCAGGAAGGTTG
CTCTATCTGCTTCCCATGATCAGAGGAGACCATCACCACAAGAATTAAATACTCGTGGTA
ATATAAACCTGGAAGGATTCCCAAGGAAGACCGCCGGATACGACTTTGATAATAACAGGT
CTCAGCATAGAGGAAATGTTTCACAGGGTCGACAGTTGCCAAGGACTGATGATTCAGATT
CAGAGAACATATTATATCCAGATAGGTCAATGGAGAAAACAGGCAAAAGAGAAACAAAAA
TGACACAGGGTGGAATGCTAGATCATGTAGATTCGAAGAAGACTACTCCCAAGCTTCCTC
AGAATGGTACCAAGAATGGCATTGAGTCTAGAACACGAAAATCAATGTCCCCTGCAGAAA
ATGAGGAAAGAAGTAGGAATACCTCTTTGATAGAGACTGAGACAGGTAGGAAGAGAAGAG
ACAGTTCTTCGGAAGAAGACAATCTATTCTTTAAGAAGTACGATAAAGCTAAGCCAGAAC
TGAAAGGTCCAATAAAAGATTTCTCACAGTAAGTGACAATATAGTTGATACGTTTTTATG
CCCTTTTGAAGTATTTCTGCTAGTGCATTTAATTTGTTTGGCTTGTTTGCACGCTCGTCA
CCAAGATTTACATTGCCCTCTCGTGAAAATGTTTGATTAAATCTGAATTTTCCTTGAGAT
TTTCAGCCGATACTAGAAATTATTTTCTGCTCGAACACACACACACACACACACACTTGT
GTATGGTCCCAAAATATAAGGCGTATTTTGTTTTGCCACAGCAAGGCTTTGAACAACAAT
CACTTTATGTATCAATTAATATATTAATTATGTGATACAAAATCGGAGTAATTTAATAAG
TGTTTTGTAATGATTTTTCTTTCATCTACAAGATCAAACTAAATAGCAGAATAAGGTCAG
ATAAGTAATGTTTAACAAATTGGGATTTTAAGGACCTTTTTTTAATCGGTACTGTAGTAG
CTCTTTGGTTAGGTATTGGAGCAACATTGCCCATTGATAAATCGTCAACTTTTAAGTCTT
TTTTATACATTTTTTGATTCATTCAACCATGAAGTACCATAGGTATCTAGGAAATAGTTA
CTTCCAGTAGAATCTTCCCTAGATACCTAAATTCCATTTTATTGTGATCCATTTTGCTAA
AATATAGATTGTACCAAAGATGCAAAATTCTTTTCTTTTCCCTTTTTATTCTAACTCGAA
ATATTGCAATGGATTTAAAACGAGAGTTTATTCTTAAGTAAATCAATCATTTTCATGTCA
CATAAATTATATACCAATAGAGAATTATTGATCAAGCACTTGTCATAAAGCGACAAAATA
AGTCTTATATTTTGGGACAAAGTTATGGAGGGATTACAGTTTACCTCTGGGGTAGCTTCT
GTGTCTCGGAATCCAATAATAATAACATTACCACTACCACACTTGCCACAAATATAGGTC
AGTCATACAGAAGCGTAACACAGCATCATAATTGGTAAGAGATTCAAGACACAACTATTC
CTTGAGAAATGGACCACACATAGGCAATTACTCAATGGCTAGTATCTCTTCGTTGTAGTC
TTACTTCTTGTTCATGCATGCAACTAACTGATTATATCCATTTTCAGATACGAAGATTAT
TTGCAGGAGTACAATGAGAAATATAAGGTGTACTCTTACTTGAACAGTCAGATAGAGAAA
ACACAGTATGTGCTAACCTGAATTTTCCTTCTAAAATTCCCCTTTGTACTCTTTTTGTTC
TTCACAGTTCATGTTCTATTTTCTCCTATAACTAGCATGCTTGTTATGCAGGTCTGAGTT
CCTAAAGGTTCAGGAGGATCTCAATGTTGCTAAAGAAAGAGATAAGGATAAGTACTATAA
CATGGTTGAAAGACTCAGAGAGATGTACCATGAATCGGGCACAGTATGTTTTTTTCCTGC
CTTTTTCTTCATTGATTAAACATGAGTATACATGACTTTTTACAGTTTACCGATAACCTG
TGCTTTGGGTCCCAGGGTGGGGGAATCAAGATCTTGGCATTCTCTGCATTTCTTCATTAT
TTCTTACTGAGGACATTATCTTCTGCAGAGGCATAAATTAATGAAGAAGGTCTTCGTATT
GCTTCATGAAGAACTGCAGGTGTGTAATATGATCTTTGAGTATGCTTTTTGGTAGTTGAC
TCCAGTTAATTTCATTATCATTTGAGTTGACCTCCATGTGTCTTGTTTCACTGGGGTTTG
TGGCATGTATTTTGATGCTCTTGGTTCATTAATTCTCCAGAGTACCAAGCAAAGGATTAA
CGACTTCGCAAAGGCCTATTCGAACGAATAATGTGTCCGCCCTCATATCATGTGAGTGAT
TTTGAAGTAATCTTTTGCCTGAAGTACATTGAAACATCTTACAGATGACAACTGTTTGCA
TTACTGACATGACTCTTTACTCATGCATTGTAGGGCATTTGCAACTGCTTTTCAGAGGCT
GTTACCCAGCATCTACTCTGAAAAATGTCGGGAACCTCGGCTTCATGCTTGCCTTTCTTA
CAAAGCAGTCCCTGGCTTGAACATTCAGCTCAAGACATTCATCAGGCGACAGAAAGCAGT
CTCATCAATTGTTCTGCTGAATTTCTTAGTGATCACAGCAGCGGCGATCGAGGGTGATGC
GGTGCAAGCAGTAAAACCAACGCCTCCACACGTGACATGTTGAAGGCGAAACTTACGGAA
CAGAGGTACTGTTGAAGGCGGGTTTACAACATCAATTTTGCAGGCAGGTAGATAGGAACT
GTGCCGGGACGGGGTTTCCCCTTTGTAGATTTTTTCCTTCTTTCTTTCTTTCAGTGAGAT
CCCTCCCAGTCCTGGCTTTTGTATCAATGTGATAAACTCAATTCTGTTTCACCTTGTACA
TAATCTGTAGACCAAACTAGAGTAGTATTTGATGGAGGTGGGGGTAATCACGGTGTACTC
CTCACGTAACGTGTTGATCAGTGAAGCTGTTGAAGTATGTTAACATGCGAGGCAACGAGC
TTGTCAAAACTATTTATCTTTGGTCCGTTATTTACTCTATTGTAGATGTTGATTAGCGTG
TGTGATTGTTTTTAGAACTATGATGTACTCCGGAGAGGAAAATATAATACCTAAACTACC
AGATCAATATCATTAGATTCACCATGCAACTCTCATATTTTATTTATTTGATATTGAAGA
TGTTAATAATGGCTTTTACAATCTTGGGCAGCTGTAGAAATGTTGGAAGTTTTGAGATAT
TAATACACCTTATGAAGTACGTTTATTAACTATGTAAAAAACCCACAAAAAATCAGAATA
CATACACCAAGTACAAATATCCTAATAAACTCTAAAATTATAAAGACTATACGGAGCACA
AAGTCAATAGTAACTTCGTCGTTCGTATTTTGATATCTCCACCAGCTTCATCCACAACTA
CACCAACATCGTCAGAAACCCGTAGGAGAGAAGCACACCAATGAAGGCCAAAGAACAGCG
ACCGAATCAGGCGCCGCTGGCCGCGAGAGCAGCGGCCCCTGTCCACCCGCAGCTACCCGC
CCACATCGGACCAAGCTGCCATGAGCCAACATGTCTGAACCACCACCACGTCGGAGCCTC
CACCACGCCGAAACGAAGTAGAAGCAACCAACCCACGCCGCCCA