Map Locations of contig_44382 (7931 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_44382

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_60434 1 2568 bp None Available Available None
MLOC_60435 7 3624 bp None Available Available None





CDS Structure of MLOC_60434






CDS Structure of MLOC_60435






Contig Sequence (7931 bp)

>contig_44382 7931 assembly3_WGSMorex_rbca.fasta
AAGGCTGCAACCGTGGAGTTAACCATGCGTGAGACCNNNNNGGGATGCGATGTGTTACAG
GCTGAATTNNNNNNNNNNAGGATCGGGGTCCCGACAACAACGCATGTACGTGATCCCCGT
AAGATCTGACGTGGCAAGCTGATGTGGCATCATACACATACACATGGCACTTGTGATGAC
ATGGAAACCTCGATGACGTGGATTCCATTAGGATCTGATGTGGCACAAAAGAAATGTTTA
AAAAAATTGGGCCTTGTCCCCATCGCGTTTTTAAATGAGCCAAGCTCAAACAATTTGAGC
CCATTTATGTGGGAAAAAATTCAGCCTTTCAACCAATTTCAATTTTTGTTCAAATTTTCA
TGGGCCAAAGAAATTTTGCCTCTCCTGTTTTCATATCAATTCATTTAACAATATCCAACA
TGGTACAATATTCAACTTTACATCAACGGAAACTTCATATGAGGTCCCCTAAACTTACAA
TATACCCAACATAAAGCTTTCAAGCTGCTAAATACTCGAAGACAGTTGCAGACAAAAACT
AGCATTGCACACAATCTTACAAAGTAGCACACAAAATAAACTTGCTTTCTCTTCAAAATA
TTTGTGTGCGTCGTCTCCCTTCTAACCACTTGGTCCACATAGAGCCTTCTTTGGCAGGTG
ATGAGCATTGGGTTGCAATATACCAATAAAATATCAAAACTTCTATACAACTAATTCTAA
AGAATTACTAGTTTAGATCAAACGACATTTATAGTATGCAAAGTTGTTTCTCAAAGAAAC
AAAAGTTGAAAGAGCATTCTAAAATCAATCTAGTAACTAGACTAACATACAAATGTAGAT
TGACTAAAAACAAGATCAACAATTACTTTAGTGAAATATAATGAGTAGTACTATTTGAAG
AAGGTTGTGTCGTTTGCACAAATGACCAACCAGAACAACAATTATTCCAGTCTAATAATT
TATTACTGGATCACATAACATTGTAGGGATCTAATAATATTTGAAGAAGGTTTCTAACAT
GACTGATCAGCAAATAATTACGCATGACTTCGATACATCAAGCCGCAGACTCAAAAAATG
GCAAAAGATACTAACCGGCTATAGGTGCATGCGCATATACCATGAGCAACAGATCAAGCA
GTACAACGATAAAAAAAACACAACATGCAAGTTTGTTTGATGCACAAAAACATATTTCAA
TGGTCCATTACTGTTCCACAGCACAAGTAAATCCAATTGTAGTAATATCAGGTCATAACC
CATTCTAAAATTCTAGGGAAGGTGTATCTGTTTATAGTGAAGAAGTGCCAATAACTAGAT
TGAGTGAAACAAACATGGTCACAAACCCAAACTGGATCAAGTGAAATAAGTAACCAATTG
AGCTAGTCAAATATGCATCTAAAAGGTAATTCTATTCCTTTTCAAATTTAGTACCACAAA
CACACCATTTTAGACATTCAGACAAACATCTGGTGTGCACAAAAGCCTGACAAACTTCCA
ACAAATTGGATGGGATAGAACAAATCAAAGTAGGTTTGAACGGTACCAACATGGTGACAG
AAGATGGGGACAGTAGGTTTGACGAAGCGAAGGAGGAGCGACAAACAGAGGGCTATACCA
ACATCAACGACGAGTGGAAACGAGAAACACCACCTGTTAGAAAGAGAAAAAACATGGTAA
AACCCGAGCTGGATCAAGTGAAACAAACTGAGGGCTATATCAACATCAACGACAAGTGGA
AACGAGCAACACCACCTGTTAGAAAGAGAAACAAACATGGTCAACACCAACTGTCAGGTC
AACACATCAAATGGTGTTTTAACCATTGATTGAGGGAAAAACAATCAAGTGACCTAATTT
ATTTATTTTGACAAATAAAAATAACCTTTCCTGTCCATTCTAGAGGTTAGTAAAACGTTT
AAATTTTGTAACATCATCTCAACCATTTAGATATGTTCACATAAGTTTTTACAATCTAGA
TCGCATTTAGATACATCATAATGTAATTAGTCTGTATGTGGCAAGTTTGTTCTCCCCTAC
AATCTAGTCTGAATGTTGTGGAAATATTACATGGCTGCCAAATATAAAACAAAAAACAAA
ATGTAATCACTGATATGCTAGAATTTTACTATCATAATTATTTTTTTCTGATAAGTCTGA
AACTTTGCTTGATCTATTTCACATATTGTAATACGGGGGACTAAGTTGCCAATCACCATG
GAAATATAACTGATAGAGCAAACAAAGATAGTGATAGCTAGTTGACAACTATTCGAAATA
CTACAAAGAGAGAAACATCCTTACGTTATCAATGAAACTAAATTAAATTATGAAGCCTCG
GTGCTTGCCTCACATGAGCAGGTAGCCGGATCCATGGGCGCTAGAGTCGGTGCCGATGGC
ATGTCAAGACTTCTCCTCCTAGACATGCGACTGAACTATTGGCGAACACAGTAGAGGCGT
TGCCATCATCACCTGAGAAACCTACAAGATAGACTTGTGTTGTTTGATTCGGTGAGCGCT
TTCTTGTGTGCTCTTGCGGGTCACTGGATGGAAACATCAAACATGTGTAAATGAGTGTAG
TACTGCAGAAGGGAGAAGCTGGACTATGTATTATCATCATTGAAGAATAAAACTGAAATA
AATCTTAACTCTCACCCTCTCGTTCTCTCTTTTCAATGAATGAATACAACATGCTAGCAT
ATCAGTATTCTTATCATGGATCTTGAGGGACAGGACAAACTGAAAGGACCAGACATTGCA
TGCGAAATGAACAAACATAACCAAATTTACCGCTATTTATTTACATATTTCTATCAATTT
TGTTTGGATTCTTAGTTCAAAACCTGAACCTGTAGCTAAAAAAAGAACAACATTGAAGCA
TATGGATCGAAGGTAGACACCTAATGCTGATGCACAAATAGAGGGTGGTATAATATGAAC
CTTATATAATCAGGTTCTTAATAAGATTTCTACATAAGCTTTAGCACTACCACTCATGCA
TCGACACAGTTTGTATGTTTGAAACCGGGTCACCTTGACATACTTTGATGCTTGAATAGT
ATGCTGCATCGAGGTGGTGAAAACCACACAAAAATCCAAAATCAATCCCAAGTTGCGTAT
ATCTAGTGACTGAAATGATGCCATGTGGAAGTCCAAAGTACCGACAAACGTATGTGGTTA
AATGTCACTCACTCGTGCTCTGAAACACAAGACATAGTTGCATTACCTCAGTTTGAAGTT
GTGGAAGGAACAAACTGCATGGGTTTGCGGCTCTGGGCTTCCTGTGGAAAACGAGGAGCA
TAAACGAAAGAAGAGCCGTGCAGGTGGAGGAAGAGCTCGATGCTAGCAGCGTGGCTACCG
TAAGTTCCAGCAGGCTCATCGTGTTGACCCGGGAACTGGCACAACGGACGGGGAATCGGC
GACAGAGCTAGCGAAAGAGATGGACTGGGGGTGTGGCGCTCTGGTAGACGCATGGCATAG
TTCCTTCCTTGACAAACCTGGTGGAGAAGGAGAGACAGGGCCGACACCATGATAGTGAAG
ATGTCGATGAGAGGAGCCGACACACGCATTCGCCAAGTGGGCCGCCGATCCCCGTTGCCC
GGTTAGTCGTTGCTAGGCAAGCAGCTACCGACGCGCATCATCGCAGGTCGGCAAGGTCTC
TGACCGCCACATATTGCTTCCGCTCCAGATCTGGCGCTACTCCATCTTGGGTCCGCGCCA
GGACCATGCCCCATCGGCGACGAGATGGCATCCGCAGGTGCCTAAGTGGGGAGGGAGGCT
GTTCTGAGCATGTGGATTGGCGAGGGGAGGGAGGCGGCTGGGAAGGATTGGGAGAGAGAT
GGGCAAAGGGAGAAGGAGCGGCTGCGGGACTTGGCTAGGGTTTCGGGATAGAGATTAGAG
AGGCGCGCCGCTATGGGCTGTGTACTTGTGGGCTGGCTCTTAAAATTTTGCATCGCCGCG
TAAGTCACTCGAAAATTTTCTTATCCGCGCGCATTGGTTCCACTTTTGGATTTCAGTTTC
TTTTTCCCTTATGGCTGCTAGTGGAACCTACTTTCGTGTCTTGTGAGCCTAGTTTTGATG
GATGATTGAAAATTATGGAACCTTCACGGATATAGATCGATCTATGATAGCTTCCATGAA
TGTTATCATTAGTCCATCCTAGATTAACAGGTTTTCTCATAGTGATACAATGTCGTTGGT
CCCAAGCTAACCACATGCACGAAACACAGGTCAAAGTAAGTCAATGGAGGCACGTGTCGG
CGGGGCAAATCTGAAATGATGTCTGCAATGGAATCCAATAACGGTCAGGGTTGGATCGTG
ACATACTTCTTTTTTGACTGATTAATCACTCGTAACTATGGAAATGTCACTCTGCTCCTA
GATTTGTGTTATCCAAGGAGGAAGAAAGTGAAATGACCGGAACTAGAGCTCATCGGCTCG
CGTCAGCGTGAAGACGCTATCTCCGATACCCCCTTGTCTTTCGGGTCAACCCTGTAGGCT
AGCAGGTCCCGCATGGCAGTTGGTCCCCACGCATCATATATGGGTCCTGCCAAAGACAAC
TACATCTCATATGCTAGGTGTAGATATACTTTGTTGGTCCTACACATGTATGATAAATTG
ACAAGTATGCCCGACACATAAACAAAATTACTACACATATAGATGACACATGGGCCAAAT
TGCAGAGGTGTCTGCCCAGTCACCCATATTCAAGCCCATGACCTTATTAATTTGGTCATG
ATGAACCCAAAATAAGGCCGCCGATAGTGATATACATTCTATGACCAATTAATTTGATGA
TGCAACGACCATTTTGCCAAAAAATCGTCACAATTTTCTACAGTTTGGACCTCCTTAGAC
CTCCTTGGATACTCATTGACAATTTTGGAAATTTTGGTCATAAATCAATGACCAATTGAC
CATGGTCGTTAAATTTTGTCATAAACAGACATATTTCTTGTAGTGACAGTTTGGGTAGGC
AAACAGTGTTCGATTGAGCTGACATTTTGAGGGGATCTCACGAACACGTGTGTCTACTTG
TTTGTCAAATTTGGTGCTATTTAGTTCAGGAGTTTAAAAGCAGTTTCCAAGACACTGAAT
GTGACAGAAGTTGTGTATACTCTGCTTTGCTGAAATCTTGCCGTTGTTCTTGATGTTGCC
GGCTGGAAATGTGGAGAGTGTGTTGTAAATCTCTCTAGAAATTCTAGAGAAGACTTTGTA
CTCATCATTGTCATATTGATGTTGTGTGGACCAGTCGGTCCACATCCGTGGTGTTTTACT
CCTCAACTTGAGGAGGTTTTTCCACGTTAAATCATGTGTCACATGTGCATGTTATTTGTG
TTATCCCACGGCTTACTTGTTGGTTGAAGTTGTCCTCAAAGTTCATCACAAGTGGAGGGG
GCTATGTAGTGTGCATATTTCCCGTGCCAGTAAATTTGTGCAGCTCATTGTTGTTGTCCA
GCCTCAACAAAGTAGTATCGGAGCTTTGGTTTGCTTGTGCAAATTGCTGAGTTTCTTGTG
GTGAAAGATGGAAGTGAATACCGACAGGATGATATCCTTGAATGGTAGAAATTACCAAGC
ATGGAAGGGCAAGATGGAGGACTTGTTATATGTGAAAGAATATTAAAAGCCAGTGTTCTC
CATTGAGATGACGGAGGTACTTCATCGCCAAGCTTATGGGTTTATTCGACAATGGGTCGG
TGACAATGTTTTGAATTTGATATGACACATGCACGCACCTTATGGCGGAAATTGGAAGAG
TTGTTTTCCCAAAAAAGGTACAAACAAGATGTTCTTGATCAAACAATTGATGTGTTTGAG
GTACAAAGAGGATATTCAAATTGCAGATCATGTGAATACATTCCAAGGCATTATAAATCA
GCTTTCTTCAATGGTAATACCATTTTAAGATGAAGTCACGGCCTTGTTGCTACTAGGATC
ATTAGCGGACAGCTGGGAGACCTTTAAGGTCACGGTTTACAGTTCAACACCTAATGGAGT
TGTCACTTGGAATCTTGTAAAAACCAGAGTACTTAATGAAGAATCCAGAAAGGTGGCTGA
AGCTAGTTCTTCCTCACATTGAGAGGTGTTGGTCACTCAGTATAGGGGGAGAAGCAATAG
GGGAGGTCCGAGTAAAGGGCAGAAAGAGGTAGGAGCAAATCAAGAGGCATATATGCTGAT
TATGAATGCCATCACTGCCATCAGAAGGTCCACATTAAGTGGCAATGTGACAAGTGGAAG
AAAGACAAAAAGAAGAAGAAGAAGCAAGATTGGAACCAAGCTGATAGTAACAGTGACATA
GAGGGCAACCGAGTTACTACAGTAGAAGAGGACATCATGCTTGGTATGCATGAAGAAAAT
GAGGGTAGATTTGGTTCTGTTGTTGAGGAGAGGATCATGTTGTTTCTGATGAAACCGTCA
TCCTTGTGGATGGTGACGAGATGATTTGGATACTAGACAGTGGTGCTACCATTCATGCTA
CATCTCGCAGAGATAACTTCACTAACTACATTTTCGGTGATTTGGTGTTTTGAAGATGTG
GAACAATTATAGGACAACCATCATTGGAAAAGGAGATGTGCATTTGGAGACCACAAATTG
TACAAGGTTAGTCCTCAAGTCTGTGAGGCATGTTGAGGCACTTCGTCTCAATATTATCTC
TGTTGCTTTGCTTGATGGAGATGATTATTTGAGCAGTTTTGGAAAAAGGCAATACAAGCT
CACCAAAGGCAGCATGATTGTTGCGAGAGGTAAAATGTTCTCAGTTTTGTATCATGTTCA
TACTAAGCTCTTTAGTGCTTCTATCAATGCACTAGAGAAGGATGATCATAGTGCTCTATG
GCATAAGAGACTTGGGCACATGAGTGAGAAGGGGATGACAGTTCTAGTGAAGGAAAAATT
GTTGAAGGGTATCAAAGGAGTTCACATCAAGAAATGTTCAGATTGCCTAGCAGGGAAGCA
ACACAGAGTTGCCTTCAATACTCTACCTCCTCACAAGAAGCCTCAAAAGTTGGACTTGAT
ACATTCCGATGTTTGCAAAATGTCGGTAAGATCTCTTGGTNGTGCAAAGTACTTTGTGAC
TTTTATTGATGACTTTTCCAGGAAAGTTTGGGCCTTCACTTTGANNACCAAAGATCAAGT
ACTAGGTGTATTCAACCAATTCCAAGCCTCAATTGAGAGAGAAACTGAGAAGAAAATCAA
GTGAATTCACACTGATAACGGAGGAGAGTATATTAGGCCATTTGATGCATATTGCAACCA
GCAAGGTATTAGGCATCTATTTCTCCCTCGAAGACACCACAACTGAATGGTATTGCTGAG
ATGATGAACATGACAATTGTGGAGAGAGCTAGATGATTGCTATCAAGTGCAAAGCTACGT
AAACACTTTTGGCGTGAGGCTTTGATGACTACAGCTTATCTTATTAATCTCTCGGCAAGT
TATCCTTTGCAGGGAGATGTTCCTAACAGAGTTTGGTGTGACCAGGATGTCTCCTATGAC
CACCTGAAAGTTTTAGGGTGCAAGGCCATTGTTCATATTACTCAAGATGAAAGGTCAAAG
CTTGGTTCAAAGATACGATAGTGCATCTTTCTTGGCTATGAAAGGTGATGAGTTTGGCTA
CAAGCTGTTTAACCCTATAGCAACGAAGGTTGTGAGAAGCTCTGATGTTGTGTTTGTAGA
AGACCAAACTATTGAGGATATTGTGAAGACAAAGGGGCAAGTTCCTCCTCAGCAGCAACA
AGACATGATTGATTATGACCCAGTTCCTGCAGCTCCAGCTTCTGTGCAAGTCGAAGAAGA
TGTACAAGATGATGTACATGGTGGTGCACGTGAAGAAGATGCTCCCCAACAACAACAAGA
GTATGATGCTTGTTGGGGGGATAACCCCGGGGNNNNNNNATCAAGCCTGCTCCTTCATTT
CCGGCTCAAAG