morexGenes - Barley RNA-seq Database

Contig contig_44283
Source Contig contig_44283
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_44283 (6304 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_44283

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_60329	4	2189 bp	MLOC_60329.4	Available	Available	LOC_Os01g36660.1, FRAME:-2, EVALUE:0.0, 13101.m03711 protein carboxyl-terminal peptidase, putative, expressed
CDS Structure of MLOC_60329

Contig Sequence (6304 bp)

>contig_44283 6304 assembly3_WGSMorex_rbca.fasta
AATGTTAGTCTCCGACTGGATCATCGAGGACCAGTTACCGACTCGATGATGGGGATTCCT
TAGTTCAGCCGGAACTGTCTAAGGGCCTTGTTCTCTATGAAGGGAAGTCCTTGGATAGGA
CTTATAGGGCAGGCCTATGANNNNACCCTCGGACTATAACCCCATCATTTACTATTCTTG
TAAAATGATATTTTAGGCTTGTTGGACTTGTTGGCTATGAGCATCGTGTTATACACAAGC
CGGGCATTTTTTCAATGCGGTTGTATTACCTCGATATATCAGTTGAATGAATTATTCTTT
ATCGAAAAAATATAATTATAATGATATCCACTCTTGCGATACGACGAGAGGCGCTTCCAT
CGGTGTGGAGACCCTCGACCCAAAATAAGCACATCTTAAGCATTATAGAGGGCCTGGGCC
GATGACCACGGGAAGCCACCCCTGTCGCCCGTGGGAACGGCAGACTGAAACCTGACCGGC
TGACCTGCGTTGCTAAGCTTTTAGCATACCTTTCGAAACGTTTTGGCTAGTTTATTTGTG
TTTTCTGCATGGCGTTTCCAGCTTTTGCTTGGTGCTTTTGAGTCACTAGAAATAAGTTTA
CTATTGAACATGTTTTTTCCTAGCTGACAAACTGATTGTCTTATTATCGTAGTGGAAGCC
TCTCGTAAAGACATGGATGATGCCATCGCTTCAACATGCTATAAGTAACAGATTTCCATG
GTCAAGAGAATGTGCACTGTCATGACAGAGAGGACATACTTAACCAGGGCAAGACGCTCG
CACGAGAGGAGTGAGGCCTTCCATGTTGACATGTTGTGACCTTCTTGATTTGCTTGGCCA
CAAGTGGGAGGAGGCCACCTTAGGTTTGTGTCAATGCATCGTCTCTTAAAACATAGTTAA
TATTATAGCCACATGCTGGTTATAAATCATTGTCATGTCATTTATATTCTATCTTGTAAC
CAACATGTATAATAGTTGATTAGAAAAATGTACTATAATTTTATTATATGGCCCACCTTT
CACTCTCACAAAGTAACTAGGAGCACATGCTAGAGCTGGCTCTTAACTAAGAGCCTGCTT
ACCTTCTTTCTCCTCTTCTCTTTTCTTCAACTAAGCAAAAATATAATAGTTTATGTCTTA
TAACCAGCTGACTCACCTCTATTGTACTTGCTCCTATCACATTATCATATGACCATTAAT
AATTTTAGATACTCCTACAACCATGTCAATGCATTGTTTTTACAAGTTGTATCTACATTT
AATGATTTTGGGTAATGTATGCATATATATATATGATTGGGCTAAAATCGTTTTTTCCTT
ATGACCACGTACAGGGGTTGTATGTTAGCTAAGATACAACCTCAATTTTTTTATTAACTA
GTATGCCATGTCGTTAAAATGCCTATGAAAACGTGCTAAGAAACTAGCATTCACACATGC
TTAAGGCCCTGTTTGGAACCACTCAGATTATATAATCTAGTTTTTATAATCTAGTATGTC
TCCAAACATGACATATTATGGTATAGATTATAAAAACTAGATGAACAGATTATTAAAAAC
TCGCAATCTACTTTATCCCAACTAAAACCAGATTATAGATTGCTAATGATCCATTACCTT
TGTAAAATTGGAGATAATTACATTCCTGCCACCGTCATCCTCCTCTTTAAAAAAACAGAG
GACAGACATGTCATTACAGTTGATATAATCTGACTTCTAAACATGTTCATCTATATTATT
TTTATAAATCAGATTATATAATCCATCTTTATAATGTAGATTATTATAATCTAGTATGGT
TTCAACAGAGCCTTACGCACGGAAAAGGGCAACCCAAGGTATTGGATGGGAAAACTGTTG
ATGGGAAAACTACCTCGTTACCAATGGCCTCGGTAGTTTCACGGGAGCATTTGATCGAAA
CGACCGAGCGCTTGGCGTAACTGGTGCGCTGACTGGCCGCCAGACCAAAGACGCGCAAGA
TCTGACGACTACCTGCCAGCTCGGAGGGGTTTGGGTGATATAGGATCACCACGTCGTCGG
CAAACACCAAACACAGAAGATACTCACTCGAAGCAGCGGGGGTTTGATGTCACAGATTGT
AAGTGGCTCTGACATCACATTTTTCGCGGGGGTTTGCCGTTGCGGAATCAGGCGCACGAC
ATTGTTTACCGTGTGTGTGCCTTGTCTTTTGGCAATTGCAGTATTGAGTAAAACTGACGG
AGCTAGCGAAGTGAAACGGGGCGTGTGGTCCAGGTGATGGGCTGGAAAAAATGGATGTGA
ATCAGTAGATGCTTGTGCTTTACTGCAAGGAAACATGGGTGGAAGCTTCAAAGCCAAGGG
AGGGACAAATTCCTGGGGGACTCCCTGCCTAGAGTTTCTAGAGAAATATACCCTAGTGGT
TCGATTGCATGGATTGAGGTGGGCGCGGTATCTGACGTGATTATATTGTTCAGGTCAGGA
GACCCATCTTTTACAACAAGTACTACCTACTGAATCCTCCCTTTGGTTGGAAAATAGTAG
TGATAAACAGACTGATTCATCGGTCAATAGTGTAGTAACTTCCAGAACGAAAGAAAAAAA
GAAAGACTGAATTTGTTGTGGCTACTATCCAAGCTAGCTAGGTGCACCTGACGTTCCTCC
CTGGCCCTCCGTAGTAGAAGTAGTTCCCCCAGACGGCGTTGACGCCGCCCTGGATGTCGT
AGCAGTTGGGGTGGTCGGCAGTGACGTGGAAGGTGTTGAGCGGGATGAGGCTGTTGTCCC
AGTCCACCACCTCCAGGTTGCGGAAGTAGGAGGAGCGGCCGAAGCCCTCCCCGGGGAAGT
GGCCGCTCCCCATCTGCGTGGCCGTGTGTGACCCGTCGGCGCGCGTGTCCACCACCTCGC
CGCCGAACTGCACCATGCTCGCATGCGACTCCAGGTGGCTGAAGAGGAAGCTAGGCCAGT
ACCCCACTAGCTCCCCCGACCCGAACTCGAGCCACCAGTTGCCGTGGTTGGGGTCCTTCC
AGATCAGGAGGCTGATGTCGAACTGGCCCCCTTTGTAGCCGGAGGTGGGCGAGATGGCCG
CCCCCATGGCGATCCTGCTGTTGGTCTGCACGAACCCTGAGCACAGCAGGTTGTAGCACC
CCGTCGTCTGGTACGCGTCCGTCTGCATCACAACTCACAAGGCCAATGCCAATTCAATTT
TGTGTTTTTTTTGTACCGATCCATGATCGATCAGATCAATGGAGGAAAAGAAAGAAGTTT
AAGGGATCTAGGAGTATTACCGTCCAGTAAGTGAAGAACCTGGGCGAGTTGTCCCCATAC
AGCTGTGGGCTCACCTGTCAGACAAAACAGCAAGCAACTGCTACTTATAGCATGTTGTCT
CGTCCCGTCCCGACAGACCGAGACCAGAGAGGAATGCATGCATGGATGATACTCATATCG
CAAAGGTAGGACTACCTGCCATCCGGCCTCGATGGTGTTGAGATCGTTGCCGAAGGTGCC
CCCGATAACCCAGATCTGCGACAGGCTGAACTCCGTCGGCGTGCTCACCTTGGGCGCCCA
CACGTTGATGCTCGCCCGCGCGCCGTAGTACTCGTCGCCGGCAACGTACCCCACCGCGTG
CTGCACTCACATTGAGTTACTACATTTTATTACTGTTTCTTATTACTAATGTTACCCCTG
TTATTCTACTGCAATTAGCTGTTGCCAACACTTTCCGCAAAAAAAAAAAAAAACCTTTCC
GCAAAAAGAAATAAATAAATAATGACACCGTATCAATTAATCTGCACCCAGCGAGAGCCA
AAATGCAGATGAAGAAGCGACACCCGGATCAATGCTCTCTGCGGATGTTAGCTCGATCGG
AGGAGTAAAAGCAACGACAAACCAATCAAATCCAGTCAAATCCATGAGGTTAAAAGCTGT
GCGCTGAATCTATGTCCTTGCACTGGATGGCATCATGGCACTGCTCGATATCACGTTTTT
AGCTAACTCCACTTTTTCAGATGCCTCCTCTGTTTTTCATCTTTTTTAAAAGAGGCGTCG
TTTAGGGCGGAGAGCCAATTTCAATCAGCAACCACAAACCAAGAATGAATTCCAGTCGTG
CTTGCTTACAATCTACTCCTTCTGTAAACTAATATAAGAGTGATTTAGATCACTTTTATA
TTAGTTTACAGAGAGAATACCATCTAATGAAAGACGTTTTTGCAGTTTAAATTGAATTGA
GCTGCAAGAACGTCTTAATATCATGGTATGGGACGGAGTGAGTAGTGAGCAGTACTAGTA
TGGCATAACGAGAGAAGAATAGACTACGGACCTCGTGGCCGCCGGCGGCGGAGTCATGCC
GTACTCTGGCCGTGGGCACCCTTCCAAATCTCCTCACTGAGCTGGCGCGTAGCACGTCGG
CCTCCGTAATCCTCCTCACCGGGACGGACCCCTCCGGGCACGACGCGCCGGACACCGCCC
AAAGCTGCACTCCGGCGTCCGCCGTGTCATTGGGGCGGCGGTGGTGTCCACTCGGCCGCG
CCGGCGGGCCCTGCGACAAGGAAATCAATCCAACAAGAGCAGTGCTTCTTCGTTAACTAC
TACAGTAATCAATCTGCATGTTGGCTTTCCCTTGGCTTTAAGTTGAAATTAAACCTCACG
ACTTTGTCGCAAAAATAAAAGTAAACCTGCAAAGCAAACGAGATGCATTACCAGTGGCCT
CTGGCCGTGCAGCCTCGGGTGGTCGAACGCCGGCTGCAGGTGCGCCGGCACGCAGTCGAT
GAGGTCGCCGTCCGGGCTCTGCCAGGAAGCAATCTCTGTCGGCCACGTCCGAATTGCAAC
AACAAGGATGACACTGCAGATAGTAGGGGCGATCAAGGAGACATGCCTGAATGGTCCGGA
CAGACGGCTTGTTGAGCCTTGTGAGGAGCGACTGGACCCGCCTGTACCTCCGGAGCTCCT
CCCCCGGCCGGAAGGTCACGTTCGCCACCGCCGCCGCCGTGCACTTGCCAAGAAGCGCGA
CATGAAGCAGCAGCAGTAACAGGACAAGGGCAGTAGCAGTGGGATGTGGATGCGATGGAG
ATGGAGAATAGGGTGCAGCCATCAGTGTGGGATTCTGTGCCTGTGAAGCTTCCTGCACGG
CGGCGTCTTGTCTCTGCTGCTGATGCTCTTGTGCGAGGAATACATTGGCTGGCTGCTCGA
TGCCTGCCGCTTGTTGCTTGGGAGTTGGGACTAGTCACCGCAAAAATACCTGTCCACTCC
AACCAGTACAGTACTGGCTGTGGGCTGTGGTAGCTCAGCTCGGAGCTAGCGAGCGCGGCC
TCGTTCGCACGCAATCAATCCCTTTTCCCAAAGAAGAAGAAAGAAGAAGAAGCAGAAGAA
AGAGGAGGAGGAGGAACACTCGTCCTCCCGCTAAGCAAAGATGTCTCCCTCCAAGTCCAA
GGCATGCCCTGCGAGACAAGCGCAGACGGAGCTATATACCCATCACTACCACCACGACCA
CCATTTCCATTCATACATGTGCTTATGGTTAGGAGGGGAGTGATTAGCTAGCGGGGCGGG
CCGACAAAGCATGGGGCTTTGCAGCATGAGGCAATTGAGTTGAGAGAGGGGGAATAATAA
TAATACTGCTGTAGTTTACTTGGGGCCGCCGGTCCGGGGTGCGCTTTTGGTAAAGGGAAG
GGGAGGCGCCCTGCCCCAAGTGGACCGCCCATCCAATGCAATGGAGTGCTGCTGCTGCCT
TTGGCCTCTCTGTAATGAGTAGCAGCAGCAAGTCTTGAGCCAGGTGTGTAAAATTTGCGA
GGAAAGGAATGCCATGGACTCACCATATACAATGCAAACAAGGAACTCTTGTAATTTATT
TCGCTTTTAGGTAAACCACACTGATCGGATTGTATATTAGGGATATGACTACGAACCTGC
TTCCTAGGTTCACCTAAGACCTCTTACGGACATGAGTGTCTTTAAAGTCATCACTATAGC
CTCGACCTAATTCGGTTCACCAACCGTCACTCGGCCTGCTTGAAGTCATTCGGATCACCT
TTGTGTCAGTCGGACACATCCTCTCACTCGGACCACATCAAGGTGGAGGCACCGAAGAGA
CAGCAACGGCTAAGGACTTAATTCATCACATGAAGTGGAGTGAAGGTCCGCGTTACTAGT
AACGCGGGGAGTTATAGCTGCCGTTTGTAATAACTTTCCTGTTTATGAGCATTAATTACC
TTGTAATGAAGCTCGGCTGGTCATGGCAGCAACTATATAAGCCATTCCCGGGCTCCAGCT
CAAAGGTTCAACACCTTGTAATCTTTCATACCCCATAAGAAAACATCAACCTCACGGCTC
GAGA