Map Locations of contig_44259 (10405 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_44259

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_60293 1 1323 bp MLOC_60293.1 Available Available None
MLOC_60294 3 2465 bp MLOC_60294.2 Available Available LOC_Os02g13130.1, FRAME:+1, EVALUE:1e-161, 13102.m01454 protein KH domain-containing protein, putative, expressed





CDS Structure of MLOC_60293






CDS Structure of MLOC_60294






Contig Sequence (10405 bp)

>contig_44259 10405 assembly3_WGSMorex_rbca.fasta
GGGCAAGCATGCGGGATAGCATAGACTTTTTCTTATGTTATGTAGTCCGTAGTGGAACTA
CCTTGTCTGAATAAATCTGTGATTGTAAACTCTGATATTATCTATGTGNNNNNNNAAACG
ATTCCCTATTTGTCATTCTTAGATTATGTATGTGTTCTGTTTATCTTGCTTGCGGAACAC
ATATATGCGCTTCTTTCCATTTTGAGGCATCGCCCCCTAAATAGGAAAGGACCGCATCTT
AGTCGTTACAGGTAGTGAAAGCGCAAGAGTGGGGAGCGATCAGTGTCATGCCAGGTTGCT
CTCCTTACCACAGATTGCCGATTTATGTCGATGATGTCATCCTTTTCATCACACCTACCA
CCGCTGACCTCAGCTTTACCAGATTAGCTTTGCAAATGTTTGGCACCACTTCAGGACTGC
ATGTCAACTTCGCCAAGTCTTCTACCATTATGATACGCTCTGATGAGACATACACTAATA
GAGTCGCGGGTGCTCTGTCGTGCTGCATGGATACTTTTTCGTGCAAATATCTTGGCATGC
AGCTCTCCATCAAGCAAATCACCCACTCGGACTCGCAGCCAGTGGTGGATGACGTACTAA
ACGTTTTGCCAGGATGGCAGCGTGGGATGGTTACGAGGCCTGGTATGCTAATGCTGGTTA
ACACGGTGATCAGAGCTAGACCCACACACCACATGCTCGTGGCGGACGCGCCAAAATGGG
CCCTTGATCGCGTGGACAAAAGCTGTCATGCATTCTTCTGGGTGGGCTCACAACATATTC
ATGGAGGCAAGTGTCTTGTTTCTTGGCAAAGGGTTTGTTAGCCCAAGCAACTTGGTGGTC
CGGGAGTGTTGGACCTGAACAAACACGGGCTGGCTTTGAGACTGAGACGGGAATAGCTTA
AACGCTCTGACGAGACCAGACCCTGGCAGGGCTTGCCGCTGGCAATGGATGCCAAAGCGC
AGGCGGCTTTCAACAGCCTAGTTCATTGGAAGGTGGGAAATGGAGAGCAAACACTATTAT
AGAAGGATCGTTGGATCGATCGGTCGTCTATAAAAGAGCTTGCGCCCTTGGTTTTTGAGT
GAATTTGCACGCAAGCGGTGAATAGGCGCATTGTCCGTGAGGCTCTACTCTCCCATCGAT
GTGCAAATGACATTACTAGAAATCTCTCTGTAGATGGGATGTTTCAGATCATCCATCTTT
GGGAGATCATGATCAACATGGTCCTTGACCCGATGCAAAGTGATACCCCTATATGGAGAT
GGAACAATAGCGGCTCTTATACCTCGAGATCGACATATCACATGTTGTGGCATGATAGTG
TTCGCTTCGCCCCGGCCCCGACAGTATGGAAATGTTGGGCACCCCTATATTGCAAGTTGT
TCATGTGGCTTGCTACACAATACCGGCTTTGGACAGCAGATCGACGGCTACGACAGGGAT
TGCAAGACCAAGCCTCTGCTTGCTACATCTACGCTCTAGAGGAAGATGTGGTTGACCACA
TTTTGTTCCACTGCGTCTTTGTCGGGCAAGTTTGGCACTATAGGACCAACATCAGCTTGG
TACCAATGACGGATGATAAGATTGCATAGTGGTGGTTGCAGGCTCGAAAGCAAATGCTGA
AGGAGAATAGGAAAGGATTTGACTCGGTCGTTATGCTCATATGTTGGAGCCTTTGGAAGC
GTCGCAACGGATTAGTGTTCGGTCAAACGAGGGTGATCTCGACAGTCGTCAACTTCACCG
ATCGGATCTTTGACCAACTACGTGCTTGGGTTAGGGCGGGAGGACACGAAGTTAACATCT
TCTGTGAGTAGTAGAGTAAAGCTTTAAGAGTGGAGAGTAGTAGAGTAAAGCTTTAGGAGT
GGAGTTACGAGGACTGGTTCGTGACAACGAGTGTGGTACCAGGTCCTCGTTGTAATCATC
AACTTCTTGTACATATTTTTGCCTTCTATAAAGCTATGGTACGCGATTGCATACTCTCAC
ATACTGCTCCACTGTCTCTAGGTTGGCATCGACCAGGCATCCCGAGCTATTGGCCTCAAG
CCAGGCGAATGGGACATCGTTGGTCATGTTGTCAGTCCTTCTCTCTTCGGAAAGAGAGGT
AGAGCAGTCACCGATGAGAGCGGTAACCCTCTAATGCTAGTTCTAGTCCACTCGCCCGGT
GAGAGCCTGACCATCGATGGGAAGCCTTGTGATCATGGCAAAGTCCTCGAGCGTCACAGT
CATCTCGCTACAAGGGAGATGGAAGTTGTGTGTTTCCAGCCGCCAACGATCAAGCAATGC
CATGAGCGCGCATGGTTCATCATCGGCGGCACGAGTTTGAATTGAAGGACAAACGATAGA
AGGCGTGCATGCTTGAAGAAGGGCTCATATCGCACGTCATATGCCATTTAGGTATCCTTT
GTGTGACCCCTCATTCGCACAGTCGTAAGTGTCTGTTAAAACTGAACACATATGTTAGAA
CGTTACTTTATATAAGAAACAGTTACATGAAAATTGTTACCTCTCCACACTCGAGAGCAC
AGGCACGATGGTTCTTGTTGAAAGCCATGTCAAGTCCCGTATACACACGCCCATTGTGCT
CATGCTCGGCCATCCTAACAAAATATACATATACAGTTTTATTATCTGACCCAACATAAT
CATCTCCACATAAAAATCAGTAAAATTATAGAAAAAATAAACTACACATCCAACATCATA
GCAATATTACAATTTGGCAATGCATCCAACGTCGCAATAAAAATATATTCATAAACATAT
TGCAAAAAGTGATTGGAATTCATTCTGAATATTATCCAACATCATATTACCACATATACA
TACATAGTTTGCAATTCATTCATCCTCACATATCCTCTACTACTACTAATATGCAACTAA
ACAACTAAAACTACATGCAAAAACTTTGTGATTTGTAAACCTAGGCTACACCTAGTGCAA
AAAATATCTACAAAACTAAAATCTTATTGCAAAAGATGATTGGAGGGGTTGGAGGAGCTT
ACCGGCCTCTTCGTTTTGCCTCCAAAGAACCGCAAAAATGATGGGCCGAAGAGGGAGATC
GAAGGAATGAATTGAGAGGGGGAAACACACCACCGCGGCCTCTGTTCGAGCAGAGGAAGA
ACAGGCTGGTGGGTGGGTGGAGCCCACCCGCAGCCTAACTAGGTCGAAAACCCTACTACT
ACCATCTATGACGTTAGGGTAATATCCACATCATCGTGGCAAACGGGGTAATATCCACGT
CATCGTGGCAAACGGCAGACAGGTCGGCTCCCTACCGCCAAAGGGAATGGTAGAGAATGG
TGGTAGCCTGCACAATCCTACCACCATCATGGATGACGATAGGAAAAGGGTCAAACCGGA
AATTTTTCCGTCTTAAGGTCAGATCCTATTGAACTTATTCAAAAGGATCAAAACAATGAA
TTTATAACCTCCCACCAACGCCGACCCTGCCTCCTCTTATGTGTGCTTATTGAGATTGTC
AAAAAGATACTAGTGCCTCCATTCTGAAGGCTTGCGTGTATTCTAGATCTATAAATTTAA
TCAACATAAGATGAATTATATAGCCTAAAAATTATAGAAAATTTAAAGTTTCTAATGATA
TATTTTTTATGATATTTAGGCAGAAAGGAGGTAGTACGATATACTTTTTAGATATAGTCA
AAAATTAGACAATTTAAAGTTTCTAATGATATACTCCCTCCGTCCCAAAATAAGTGACTC
AAAAGTGATTCTACTTTACACTAAAGTTAATACAAAACCGAGTCATTTTTGAGTCACTTA
TTTTGAAACAGAGAGAGCACCTTGTAGATATATAAGCCTTGTAATATTAGCAGAAAAAAG
GTAGTACGATCTAGCCATATCTCTCTGCCACAGAAGCTCCTCCTGAAATATCAGACTTAT
GTTTGTTTCACAGAGAACTTCAAAGAGAACTCATATTGTGAGGCCGTTTTCAAGCTTAAA
AACAAGTGAATCAAGTGCTGCTAGAAATTGATGTCAAATACATACCATCCACATAACTAC
AACAACACGTTAAGCAGCAAAATTGAATACAGTTGCATTTCAGATTATCCAAACCTAGTA
TAGGTTGCACCAGAGATCACAAGCAGTTCGAGTTCGAGAGCAGCAAAACAAGGATAATAA
TATAGCAATATATAAAGTTCACAATAAAGCAATCAGTAAGATAACATGGGTAAACTGAGG
ATTATACTTCAAGCAGCAGAGCCAAGGAAACCAGATTTCAGATGCAGCTGAGGCAGGTAG
CTCAACTCGGAGAAGTTTGGGGGGCACCACTGTTGGCAGTAGCAGGAGCGGCAGCTGCTG
TGGTAGGCGCAGGTGCGGCGGCAGATTGATCCTGGGACGCAGCAGGTGCTGTGGCTTCAG
TAGAATAAGCAGTAGGCTGCCCATAGCTACCAGTAGCATAAGGATCACCGTATGACTGCT
GCTGGCCATAGCCTGGCTGGCTAGCAGTAGGTGCACCAGGGTAAGGCGGTGGAGCACCAT
AGCCTGGCTGACTGTATCCATACTGCCCATATCCAGCCTGAGCAGGCGGTGCCTGTCCAT
AAGTAGGAGCAGATGAAGGCAGCTTCTGAGCCTGTAGAGGCGGCTGCCCATAACCACCCT
GACCATACGTGCCCTGTTGTGGTGGCTGCGGACCATAGCCAGGCTGTGTCTGTGGAGCAA
CGTATCCAGATGGAGGGGCAGAACCTTGCGCCGGGTAGCTTGATGCAGCAGCACTAGCAG
GTGGTTGGCTAGGATAACCCGGTTGGCCTCCGGTGGAAGGAGTTGAAGCTTGCTGCCCTG
GAGATGCTTGACCAGCGCCACCTGGACCACCATAGCTCGGTGCAGTGCCATCCTGAGTTG
AGTTAGCAGCTGATCCATAGCCAGATGCCCCATAGCTCTGCTGATCATATCCAGGCTGCT
GTGAGTAAGACTGCTGCTGCCCTTGGGTCTGGTAACCAGAGTAGTCATAAGCTTGCTGCC
CGCCACTCTGCTGGGAGTAGGTAGAATCACCATACCCTTGTGAAGCATAACTAGCAGGAG
GATGGCTGTAATTGTAGTTGTTAGCATCAGCAGGTGCAGCAGTTCCAGTGGCAGATTGTT
GCTGTTGTGGTTGCTGTTGTTGGTTATAGTAGTCATAGCCAGTGCCAGGGGGGGGCTGCT
GTGATTGCTGGTTTGAAGACTGATCCCACCCTGTCTGATACCCTCCAGATGCTGGAGGGT
AGCTGCCATAAGGTTGCTGGCCATACTGTGGTGGTGCACCAGGATAAGCTCCAGGCTGCA
TGTAACCGTAACCAGGCTGTTGTGTTGTTGGTGCACCAGGCGCGCCCCAGTTGGCCTGAG
GACGAGGAGGGCGGTAGCCCTGCTGAGAATAGCCACCTGACATTTGATTTCTGGCACGAT
TCTGCAAAAATAGTTTGCACATCTGTATATGTATAGGATAAAACATGCAATGGACCATGC
AGAACAAGTGCAGACCAGACAAAACATATCCAAAAACAAAGCAACGTAATATACAGAAAT
TCCAGAACCACCAAGAAAAAATGGAGGGGTCAACTCACCGAGCAAGATTCTCAAGCAACA
TTGCTGATGCCCATCTAGCGTCTCCCATTTGCAAAACTATGGGAGCTAATGAAGATTGGG
CAGCTAGACAAACACATACATACATTGAATATTCATGCAATAAAGGATTGCCTTGCAGTT
TATAAATGTTTTGCACTTTATAGAAGTTGATAAATCAGTAATACTCGATGGTGACAGTGA
TCCTTATTATGTGGAACATATACGCATATTGCTAAATGACAGAACATACACAACAGCAGT
TCTTTCAGACATGTCTCCTACAACAAAGAATATATTACTTCCGCTGTCCCAAAATAACTG
CCTCAACTTTGTACTAGCCGTTGTACGAAGTTGTACTAAGCTTAAAAAACTTATTTTGAG
ACGGAGGGAGTACAAGTGAACAAAAGAATATATTACTTCCGCTGTCCCAAAATAACTGCC
TCAACTTTGTACTAGCTGTTGTACGAAGTTGTACTAAGCTTAAAAAACTTATTTTGAGAC
GGAGGGAGTACAAGTGAACAAAAGAATGTCAAACAGAATTTAAGCAAAGTTTTAAGGAAG
CTTGGTCATGGTAACCTGAAAAATCAACAGAGAGAAAATATATACGGGCAAACCAAAGAC
AATAGATTAATGCAAGGTATCCTGCATAATCTTTCAAAACAACACATAATATATACAAAC
TTTCTTGCCTAGTCAATAAATTATAACATTGTTATCTGTTACATGTTGCTCCCAGTTGGT
GGTGCTAGCAACAGATAAAATGGGATATCAAGAATTGAAGGAAGAATGTAAGAATGATAT
CTACCCCATGACCGAGCAAAAATATCAATGCAAACTCGTCACCTGTATAGAGGATTGCAC
CAACTATCCCAAAGATGTACAGAAATAACAAATGCAAATTTAAACAGACAAGATCACAAG
ACCAGATACATGAAATCCGATTATATAATCCAAATACGAAGCAGTTATTTCCGTTTCAAT
ATAGAAGGACCAGGCGTGTTCCGGGATGTATGTATTATATTGTTCAGAAAGTATATACCA
TTGAATTTGCATTTGGATTCTAATGGTGCTCCAATGCTACACATGGACCTTCTATACCGA
AACAGAGTTTATCTTTCATTCATGAGCATCAAGTATATTAACATCAGGTAGTTACAAACC
TGGCCACCAGGATTGATGTGTGCAGACCTCAGAACTATTTACAGACACTAATTTGGCCTT
ATGTCAAGATAATAAACACAGTGTAACCAGGGACATATGATAGCACCACAAGCACCAGTA
TGATATGTAGTAAAGACGTTGTGATAGGATATCAACTTCCCAATGAAAGCATGGATTTGC
AAGTACTTGACTGTGAGTGTTTAAATATTTATATATTTTCATCAGAGAGTCCAGAGAGAT
AGCAGCTAATAACAAAGAGATTGGGCAAATTACAATTACTTCAGATTCGTTGTGCGTCTC
TGAACATCTGAGAAGCAAGCACAGAATTGTATAAAGTATACAATCATGTCAAAGCCAAAC
TGCTGGTGCTCCATGACCAACTTGTTTCACAAGACAACCCATTGAGATAAAAAAATTGGA
CATGTATATTTGACAAGAATATAGGGTATATCATAACTAAATACACAGAAGATTGTCAAA
AGCAAACAATGGAAAACAGAGGTCAAATAGAGAAATATAAATCGAGACAAAAACACAGTA
ACATACAAAAAGCTGTAATCAAACCCACATGATTTTAACAACACAGATAAATAACAAACA
GTGGCAGCAATTAGGAAGTGGCATGAAAAGAGAAAGAAAGCTGACCTCACTGGTAACCTC
ACTCACAAGCTGCTTTGCTATTTCAATTTGCTCTGCAGTACCATCAATATACAGTGTTCT
TTCAGTTGAAGTATCACCAGGAGGCAAATGTAAAGGAATGACCTGCAGAAGGATTTGTGA
GGACAAATGAAATATTACTATTATTATTATTACAAATGGACAGGGGTGCGTGGAAGCTTG
CTATCCATGTGCCAGAAACATGAGTTGGTCGCGAGATCTTATGAGTTCCACCTCTAGCCT
ACCCCAACTTGTTTGGGACTAAAGGCTTTGTTGCTGTTGTTGTTACTGTATTATTACTAA
TGGAAATGATGAAGTTAATACAAAATATACAATACTAATTAACAAGGCGATACAGGTGTA
GAAGATAATGGTAACAGATGGTTATATAGACAAAAGGAGCATGAGTTCTAATTCTAATTG
AGCATACTCAGAACTTGGATTTAATTAACTTGCTCAAGCATAAGAAAACTGAATAAAGAA
CAGCGACAACAAAACGCATCATGTAGTGCTAGGTATCTTTCAGTTAGCAAATTAATGCTA
CAACTTCGCAATAAGAATTTTCACAAACCTGTATACGAGCTTGAGATTTGGCCTGCATGG
ATTTTATAGTCTCACCACCCTTACCAATAACCAGACCGACCTGAAATAAGAAAAAATAGT
TAGACATGGAAAGGAATAGGCAAGGTTTTTTACCAACAAAGAAACTGAAGTTCGTGAAAT
AATAACAGCTGTGAAGTTTACAAGGCATCATTATTGCTATATTGGGGCATGGTATGATTT
TCAGAGTCTTAAAAGCAAACCAGTTCTAGAAAGCAGCCAGTTTACCTTGTTGTTAGCAAT
TTGCATTTGGAATTGCTCAGCACCAGGTTGAGGTGCGTTGTACTTCCGATTAGAGATAGT
GCCAGATGATCCAGCATCAGCCTGCAAAAGGTCACATGACACGTATGGTTGAATAAAAGG
ATGCACAACTAAATTAAGTCCCGACCATAAAGAAGGTATCACAGTACCTCTGCAAGAACA
TCAATTATCAACTGCTCAGCTCTGCTTATCTGGTCAGGAGTGCCCGAAATATCAACCGAT
CTTGTCTGTGAGCCAGGTTGAACATCCATGTCCCTTGTTACTTGGATCTTTGCCCCTGAC
TGAGCTTGGAGATGCTTTATAGTTTCTCCAGCTTTGCCAATGATAACACCAACCTAAAAA
TCAAGGAACGTTATCAGTTAGCAGACAAAAAAACTGCACTTCATGCAACCTTCCATCAAC
TTCATGAATCCAAAGACCAGAAGAGTAAACTGCCAAGTAGCATACCCTTCCATTTGGGAT
ATCAATCTTTTTTGTTGTACTACCACTCTGGTATCCACCACCATATGAAGAATACTGATG
CGAGTTTCCTTGAGAAGATAAGGGAGGGAGGGAAGAACCATGGCCTGGAAACAAAACAAC
GACTCATTATATTCCTGATAGCTGCGTATTTGCTAACTGAGAAGAATAACATCCACGTGA
AAAACATAAAACAGTACAATAAAATGATGTCAGTACATAAGTAACAAACTAATAACGTTC
AGAGCTGCCTGGAAATATTAAAGGAAATCACATCATTTATGTACTTCATGAGATAATATT
TGGCTTTGTGACTATAAAGAATTATGAAAGCAGTATATTGCCGTTTTTGCATTCACATGA
AAAAAATGAGAAAAAGGAAACCACATAAACTATTGTCATTTAGTGGCAATGGCTACTACA
GAAGTTTCAACGCATATCATTGCTGCACCTAGCAGAGAGGTGCTAGTTCCTCGAGACACT
GATTAAAATATTACATGATATAGCAGAATCAAACTATGGATACTACTGATCTACACAAGA
TATATTTGCCAGAATTATTAACAAACTTTTAGTCATCCTGATAAACCCGTCATAATATTT
TAACCTACGAAGATCTAAACTTCCTAGCAAGGATAACGAAATCGCTAGGCGTTCTGTTGT
TGCTTAGATTGTAGCACGGTTAAGATCGCCTCGGGAGGCAATTTTCTTACACTGCTTCCT
AAACGTATCGCTAAATCGCATGGATCGCATAGCAGTACTTAGCAGCTAAGGAACAAACTA
AATAAACAGCATAACAGCAGCCGCGACCACAAGCACACAGAAAACAGATCTCCCGATCCA
AAACGTGTTTCATGAGATATAGCCAAGATACTCACCACCACCGGCTGAGGACGAGAATCC
GAGGCCGCCGCCACCGATACGGCCACCGCCCCCCAGGGAACCTCCTCCGCCACCGGTGCC
AACGTCGTCGTCGCCGTTGTCTATACGGGGACGCTTCGCCTCAGCGGCGCTGAAGAGCCT
AGCTGCGATCTCCTGCGCGCGTTGCTTCGCGAGCTGGATCTCGTCGGGAGGCGGCGGCAC
AGTATTGTACGAAGATGGCACCGGGCCACCGGCAACCGGCGGCGAGGCAGGCGGTGGGCC
GGAGGAGAATCCCGTGCGGCGCGGCGGCGGGGAGTCGTCGTACTTGCGCTTGGAGGAGTA
GTGGTCGTCGGCCATGGCGGCGGGGGAACTAGGGTTAGGGTGGTGGTGGCGAGAAGCGCG
CTGTTGTGGGGGAGCAGAGGGATAAGACGGCGCAAAACGGAGAACCCTAGAGTGCTGCAG
GGATGCGTATTTATATGCTACATTGAGGATTTTAGTTCTTTGTCTCCTCGTTTTTATTTC
TAAGAGCAAGTAGTCAGCTGGCTATAAGGAATAAACTAATACTTCCTCCGTACCTAAATA
TAAGTCTTTCTAGGGATTCTATTAGAGGACTACATACGGATGTATATAGACATTCTTTAG
AGTGTAGATTCATTCATTTTACTTCGTACGTAGTCACCTAGTGAAATCTCTTAAAAGACT
TATATTTATGAACGGAGGAAGTATATTTTTATTTAGTTAGAGAAAGAGAAGAGGAGAGAG
AAGGTAAGCGGACTCTTAGCTAAGAGCCAGCTCTAGCACGTGTTTCTAGGCATTTTGTGA
GTATGAAAGGTGGGCCATATAATAA