Contig Data
morexGenes
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Map Locations of contig_442233 (4430 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_442233

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_60245 2 1541 bp MLOC_60245.2 Available Available LOC_Os04g41960.1, FRAME:+2, EVALUE:4e-132, 13104.m04127 protein NADP-dependent oxidoreductase, putative, expressed





CDS Structure of MLOC_60245






Contig Sequence (4430 bp)

>contig_442233 4430 assembly3_WGSMorex_rbca.fasta
GTTGGTGATGACGATGGCGATGAATCCNNNNNNNNNNNNNNNNNAACGGACTCGAGATCA
GCCCTCCGAAAGAAGAACTGGAGGTGGCATCGGCTCTGTCTCATGAAACACGACGAAAAA
TTCTCTCTAATTTTTTCTCCGAAGATGTGATTTTATAGGATTGGAATTAGGATCGGAGGA
GTCACATGGGCCACATAAGTCATCAGGGCGCGACCTAGGGGCGCCCTGTTGGCTTGTGCC
CCCCTGACAGCATTTCTCCGGCGGGTCTTTGCTCCATAATTCCTTATAAATGACATAAAT
AAATCACAAAAAGTTTCGTCCAATTCNNNNNNNNNNNNTTTCTGCACAAAAATAACACCA
GGGTAGTTCTGCTGAAAACATCGCTAGTCCGGGTTAGTTTCATTTAAATCATGTAAATTA
GAGGTCATAATGAGAGCAAAAATGTTTAGAACAGTAGATACGTTGGAGACGTATCAACCC
CCAAGCTTAAACCATTGTTTGTCCTCAAACAATCTCAGTTGTGGTACTGTGGAACTACAG
CCCCAACTATCGTGTCTTTATGATATTCGCTCGAGACGTTGTCACGAGCAATGCTATACC
TACGTAAGGTAGTTACGTAAACTAACGTAATTGCTTATCTGTCCTTTTTTAATTAGGATT
AGTTAGGGGAGGGGCGCCATCCACTAGAAAAGTTACGTAACAGTACGTAGGAATTTTACG
TAAGTGTAGCATTTTTGCGTTGTCACTGTACAATGATTAGTGGAGCAACCAGTACGCGTA
AGCAGTAAAACGTTATTTGTCAGCACGCGATGTAAGTTGGAAGCCTAGGACCGACAACAA
CAAGTGGCTCGTCACCGCATGGGACATGTGGTTAGTAAAATCCAAATTCATATAACAAGT
GGCCCGTCATCCCCAAAATTGAATAATACCAATCGATTTCTTATAGAAATCCCAAATATA
ATTCAAGCTAATCAAAACAAGTGACTCAACTGGTCACGTATTTGTTTGGCGCGGCTTCTG
GTGACTAGTCCATTGATGGTTGATGTTGCGTAGGCCAAATTCATTGTTTTGATCTTTCTT
AAAAGTTAAGTCAAATCTGATCAGACCTTCAACGGTAGGATTTCACGTCTATCATAAAAA
AATTATAAGTTACGAATACCGTGCACGTACATGCCTACCGCCAGACCCCTTGACGGTAGA
GTTATACATGCTACCGTCACACCCTTTGACGATAGGTCATTTGCCTACCGCCAAAGACCT
TGGCGGTAGGTTGTCATGTCCTACCGTCTAAGAGTCTGGCGGTACCAAAAGTGTCAAATC
CGATTTATTTTTTCCAAACGAAATCAAATCCGACTTAACTTTAGCAAAAAGGTCAAAACA
GTGAATTTTGCCTCCTGGTCACATACATTCAATTGCGGCTCTGTGGAATCACAGTTGTTG
TGGGCTAGTGGCTTTATGATTAGTGGACGATATAAGTGTCAGACGTACGCTGAAACACTG
ATCAATGCCCCACTTAGCAGGGCGGGCACGTTGGAAGCAAAGTAACAACAGTGATCCGAC
AATACCAACATGTGGCGTCCCCAAGCCTAGGGACCATATATAGATCGATGCCATAGCAGA
AATCCCAAACACATTCCAGGCTAGCTAATCAATTCGCTGTGGATCGTAGTTGTAATCTAT
CAAGGTACGTACGGCGGCGATGGCGGAGCTGATGAGCCGGAGGGTGATCTTCAAGGACTA
CGTGGAAGGCTACCCGACGGAGGAGCACATGGAGCTGCTCCCCGCCGCCGCCGTCGACGA
AGCCGCGGCCGCCGAGGACGGCTCGGTGCTGGTGAAGAACCTGTGCCTCTCCTGCGACCC
CTACATGCGCCCCAAGATGGCGCGCCCGCAGGAGCAGTGGTACACCGAGGCCTACGTCCC
TGGCACCACCATCACCGGCTTCGGGGTGGCCCAGGTGGTCCGCTCGTCGCTGCCCGGCCT
CGCCGCCGGCGACCTCGTGTCGGGCGTCACGGGGTGGGAGGACTACAGCGTCATCAAGCC
GCCCTTCGCCGGCCAGCTCACCAAGATCCGGCGGGAGGAGGACGGCGTGCCGCTGTCCTA
CTACACGGGCGTCCTGGGCATGCCGGGCTTCACCGCCTACGTGGGCTTCCACCACATCTG
CTCGCCCAAGGCGGGCGAGAAGGTGTTCGTCTCGGCGGCCTCCGGCGCCGTCGGGCAGCT
GGTGGGCCAGTTCGCCAGGCTCATGGGCTGCCACGTCGTCGGCAGCGCCGGCTCCGACGA
CAAGGTCCGGCTGCTCAAGGACAAGTTGGGCTTCCACGACGCCTTCAACTACAAGGAGGA
GGCCGCCGACCTCTCCGGCGCGCTCAAGAAGCGCTTCCCCGACGGCATCGACGTCTACTT
CGAGAACGTGGGCGGGAAGATGCTGGAGGCCGTGCTGGCCAACATGAAGGTGCACGGCCG
CATCGCCGTCTGCGGCCTCATCTCGCAGTACAACCTCGCCGCCGGCCAGAAAGACGCGGA
GGAGCTCAACGCGCGCAACCTGGTGTACCTCGTCTCCAAGCGGATCCGCATGCAGGGGTT
CGTCGAGCCGGACCACAAGCACCTCTACCCGGAGTACAGGGCGTGGGTGCTGCCGCACAT
CAAGGACGGGAAGGTGGTGTACGTGGAGGACGTCGTGGAGGGACTCGAGGCGGCGCCCGG
AGCGCTCATCGGACTCTTCCACGGACGCAACGTCGGCAAGCAGGTCGTCAAGCTCGCCAA
CCCTCAGTGACTCACACATCGCATCCGCATGCAGTGTCCTTGACAAGTCACCAAATAAAA
CGAATGGCGAGATACATGTGCATGCATGGCGCTGGGAAGCTATCATGAGGAGTCCTTGTT
TACGTTGTATTATCCTTCGTTAAGCGTCATTCACGTGTTTTGAATTATTTGTTTCTTCAA
TAGTCTCTGTCCATTCTATATTCGTTAGATCATAGCTGAAGATCCGTGTAAAAAAAGAAT
CTTCCATTTCAGATGCTATGTCATTTGATTGAAACTTAGTTAAGTCTCAATCAACTCACA
ACTAACCACACTCAAAACAAAACACGAGATCCATGTGCGTCGCGCTGGGAAGCGGAAGCT
ATCATGAGGAATTAATCAGTCCTTGTTTAACGGGTGTTTGGTTACAGGGACTTATTAGGG
ACTTAGAATATATAAATCTCATCTAAACCAAACAGGAGGGATTTATAGGGGACTTAAAGT
GGGTATTTGTGACTTATGAAATAAGACTCTCAAGGTGGGACTTGGACTTATAGTTGTAAT
ATGGTCTTATAGGAACTATAAGTCCTAGGAACCAAACAGGTAGGGACTTTTTAGGGACTT
AGAACTTATAAGTTGGGACTAAAAAAAGTCCTTCGTTAATCATTATTTACGCGTTCTGAT
TTCTTTTGTTTATTTTTGAATGATTCGAAGATGTTCGCCACCCCTCGTCATGGTTGAATT
ATTTGTTTTGATTTTCTCCTCGGTAAATCAAAAGCACTTGAATTTTTAGAGTTATTTTTT
TAAAATTTCAGCTTCCAAATATTCAGAGGTGGTTCAATGTCCGAGAGTGCTCGAAAGGAA
AAACAACATGCATGGTCACTACTGAAAAATCGGTGTACGTCAAGCCTTTGTGCTATGGTC
AGGAAAAGAAGGAACTACAAGTTGCAGGTGAAGTCACATGGAGTCTTTGGAGTAGCAGCG
GTGCTCATGGGATAAGCTCAAGTCTAATGTATATGGAAGTTTGATGCATAAACGAATTCA
AGGTGGTGGAGAATATTCGTGAATGTGGAGTTCGTTAGAGTTGCATCGAATATTGTGTAC
AAGGTAGGTTACAGTTGAACTTATAGTTGTATTGTGTTTAGATAGAACTAGAAAAAAGGC
CCGTGCGTTGCAACGGGAGAAAAAACCCTCTCATGCCTCTAGCTTAGTTAATTGATTTAA
AAAAATGACTTAATATTGAATAATACATATAAATAATTTGGGATCTAAAACATGGTTGCA
TGCTTATGCCTATGAGCATGGGACATGGGCCTATATGCCGCTGCATGTCGAATACCAATG
AATCGGGACAATAATTATGTTGATTAAGATTTGACATGGGCCTATATGAGCAATGGGTAG
TAAAGATTTCTAATATATTAATTTACATTGTACCCTATATAGTATTTTAAAAATATAAAA
TAACAACATATTCAAACTCTACACATTTTTCTAATCAAATTCGATATATAACATGTTTAA
ATTGGATTTATGGTTTAAAAAATATTGTTATTTGAAATTACATATTTATTCTGAATAGAC
TATGGGGTTATCAAAATTATTTAACATGTAAAATAACAATATATTCAAACTCTACACATT
TTTCTNNNNNNNTTTCATATATAACATGTTTAAATTAGATTTACGGTTTA