morexGenes - Barley RNA-seq Database

Contig contig_442192

Source Contig contig_442192

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_442192 (2862 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_442192

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_60229	1	360 bp	AK358227	Not available	Available	None
MLOC_60228	1	675 bp	AK251160.1	Available	Available	None

CDS Structure of MLOC_60229

CDS Structure of MLOC_60228

Contig Sequence (2862 bp)

>contig_442192 2862 assembly3_WGSMorex_rbca.fasta
CCCCCCTTCTCTTGCTAATTTTTCTTCCCTCGGTTGTCACAGAGCTATGCATTCGTCTGA
ACCTCGCTGTTTATCTTCTTCTACTGCAGATATCTCTTGGTGCTGGACAAGACGAACTGG
AAGACCAACATGCTGACGGGTCTCTTGGTCCCATACATTTTCTTCACCATGCCTTCTCTG
CTCTTCTCCTTTATAAGGTGATTATAGTCCGCGAATTCCCTACTGCAACGTCCCTTCAGG
TTTTAAATTCTCATGTGCGACTGTTTTTCAGTGAGCTGTGTGTGTGACTGTTGTTCTTCT
AGTGAGCTGTGTGGCTGTTGTTTTTTCTAGTGAGCCGTGGGACTGTTGCATGAGTTGCTA
TGGATTACTAACAGTCTGTCAATTTGAATGACATGAGCTCGCAAAATCAAAACATTGCAT
ACATATTTTTTTAAAATAGATTATTTTTGTTTTGTTTACAGTGGTGAACGTCCAACCTGT
AGTGCTGGTGGTTTGTTAGCGTTCTGCGGTCCACAGTCCCTTTCCAGTAGTAATAGTTTG
CTTTGGTTTTGTATACCGTAGTTTCCTTTTGTGTCGGCACTAGATGCTGGTCTGGACTTT
ACTCCGTTAACAATGATACTGAACTCTGGCCTTATGGTTGTACTGTTGAAAATACTACTG
CATATATCAAGGTATGGTATTGTCGGAAACTGTTTCACATAATAGGCCAAGGGTCTGAAG
ATCGATTTTCTTTAAAACAAAGTTATCTCACGACTGAGAATAAATCTGAGAACTTTTTTT
TTAGATTATAAATCTGAAAACTTTATAGAGGGATGATAAAGTGAACTAACTACTAAGATG
CATCCGCCTATTGCTCCTGAGTCCTGACCGCAAAACTCAAGCCAGTACCATTTTCATGAT
GCTATATCGTTTGTTGAACTGTTACAGTTTTATATTCCTTAAAAAAAAACTGATACAGCT
TTACAGCATTACATACATACATACATATATACGAAACAAATTCGTGATTGCTGAACATCA
AAATTGCAGGGGGGAGATTGGTAGCTGGATCGCGTTCGTTGTTGTGGTCCTACGGCTGTT
CTTTCCGCGCCACTTCCCTGGTACTATAATTTTGCACTCTGTTTTCTTTCATGTATTCAG
TAATCTGTCCTTTAAAAGTTGTTTTACATAAATCTCACATTGGGAATGGGTATTCTCATC
ATGTTGTCAGATTGGCTAGAGCTGCCTGGCTCTCTGATCCTGCTCACGGCGGTCGCCCCC
AGCATCTTCGCAGACACCTTCAGGGGCTCGTGGCTCATCATCGGCGTCGCCGTATGCCTG
GTCATCGGGTGCTACCTGCTCCACGAGCACATCAAGGCGTCAGGAGGCCTCAAGGAGGCC
TTCCAGAAGGCCAATGGCTGGTCCAACACCATCGGCATTCTCTTGCTCTTCATCTACCCG
GTCTGGGCCATCGTGATGTGGTTCCTGTAGGCTTGTGCCTGCAGTTCCTCGGTCGCTGTT
TCAGCGCTCATCGTGCAGCGATTGATAAAGTGATTTGGCGTCGATGAACCCATGCGAGCT
TGTACCTGTTGAATGTTTGATGAACTGTCTCGGCGATGTTTCCATTTGGTGCCACTGCTT
AATTTGTTTCCTTGATCTGTGCGTACATAACATCAATAAAAACGTCTGCTCTGTTGATCG
CTGGGTGGATTGAAGTGATGAGCTGCCGGCAAGTTCTTCTCATGCATGTTCGTATGATGG
TTGCGTACAACCGATGTGTTATGATCTTATTAATTACTCTAATCACTCCGATATATACTT
CTTCAGTTTCTATTTCTTTAAGTTTTGTTAAAAGAATACATACAAATGTATATAGATATA
TCTTAAAGTGTAGATTTATTCATTTTATTTCGTAAGTAATTTTTTAGTGAAACTTTTAAA
AAAATTATATTTAAAAACAAAGAAAGTAGTTCATAAACTCGACTAATCATTTTTTTTACT
TTGATGAGGAGAATTGGAGGGTTACATTGAGGTCGCCCTCCTTAAGAGCCACCCAATCTT
ATTTCGTCTGTCTTAAAATATAAGGCATTTTTGCAGTTCAAATATCAGCGTACAATCTTT
GAGAAGAAGGAATTTCTGTCTGAACATAAGTATAACTGATCGAACTTTCAGAATAATTTT
CACGAAGCACGTTCTCATACATAAATTTATTTCGACAAACACTTCTATAACATTACCTCC
GTACTGTAAATGTCTTGTTTTTTTTTTCTTTTTTAGGGAGGTAAACGGCTTGTATTTTGA
AATAAAAAAAGGTACATAATACTACTTCCTCTATCTTAAAATAACTGTTTTAATTTTATA
CTATCTTTAGTATAAAATTATATTAAATTTAAGATATTTATTTTAGAACAGAGGGAGTAC
TACTGAATTCATATTGTTGTCAAAAGTCAGAGCCCATGATATGCTGTGATAACAAGCTTA
AATTAAAATATTGCATGCATGAAATAATACATTGGGATCTGCCCACCACGTGTCAAGCGG
GTCCGCGGAGAATTGTCCAGACCGCGCGCCACCTGTTCCGTCGACCCCAGCAGGTCCTGG
CAGCTGCCGGCCTGTACATATTTCCTATCCGCGCAGGCACAGCCTAGCACAAATCAAACC
CCAAGCCCGAGGCCATCCATCCATCCCTGCGCAGAGCTCGATCCGCACAGTGCGAGGCTT
GAGATTTTTCCAGGTCTCGGCGATTCGGGGGAAGATGGCGCCGTCGTTCCTCGCGATGAA
GACGGGCGCGGCGTCCGGCGCGTCGGAGGCGGCGCAGGCGCTGCTCGAGTCGGACCTGCG
GGAGCTGGGCATGGCCGCGCGGAAGCTCGCCAACCACGCCAT