morexGenes - Barley RNA-seq Database

Contig contig_442131
Source Contig contig_442131
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_442131 (7540 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_442131

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_60208	1	920 bp	MLOC_60208.1	Available	Available	LOC_Os05g02060.1, FRAME:+1, EVALUE:1e-74, 13105.m00159 protein mitochondrial import inner membrane translocase subunit Tim17, putative, expressed
MLOC_60209	1	156 bp	MLOC_60209.1	Available	Available	None
CDS Structure of MLOC_60208

CDS Structure of MLOC_60209

Contig Sequence (7540 bp)

>contig_442131 7540 assembly3_WGSMorex_rbca.fasta
TACGGGAGCCTCTTGCCGCGCGTCTCCTCGCANNNTGCCACGTGTCCGGCTGGGTGGGGG
CGGCTGGAAAAATTCTCCACCCCAATGAAAAAATTCCGCCGGGGCAACCCCAGGAGGCCG
AAAAAATGCCTCCTGGGGACACAGCGGGTGGAGATGCTCTTAATCCCTTGTCAAAGTTCT
ATCAACTATAATATACCATGAAAAAGTTTAGTCTCGAATTTAAACTACACTAACCAGATT
GAGATGTTTGTACAGCTGATATATAAACAGAAAACTGAACTCCTGTAAGAGGCATGTAAT
GCAGCAGAGTGAAGATAAATTTGACATAAAAGGCAACATTTCACACATGCACAAGAATAG
GCAATATGGTTTATACAACCCTCCTAGACTAACGCAAACACTATCATCACGGCAAAGAGC
AAAAATTGAGTTTTTCAGAGAAATTGCAACTGAATATGGAACATGCCAAACACTACAATA
GCATTGACAGAAAAATAACAGATTAAATGCTGGATGACACCTACTTGTATGTACCTACTT
CATTGCACTCTAGCTAGGTCTGGGTGCGTGCGGTGCAGGAGACTGTGGAGGGGAATGATG
GTTTGGCTCAACCAGTTCAGGTCAAGGACATTGGACTCGACTCTGCCGTACCAACAAGCG
CCTACCTGAATTTTGATATTGTCAACTTTTCAGTTAGCTTTGAGAATCAGTTACTACGCT
ATGTGAGTACTCCCTTGGTCTCAAAATATAAAAAGCGTTCTTTACACTGGTATAGTGTAA
AAAACGCTCTATGAAAATTTCTTCATCTTTTTGTCCTCGCTAAGAGGCAATTTTAGTGGC
GCTTCACTTTGCAACCTTTTTTTAAGATGTACACATCCGTAGGCATAAGTCGCTTGTATA
CATACAGAGATACAACGCATACAAGCAGCGACAGAAAACGAGGAAGGGATGATTACTGAA
GCTTCATCGACTAATAAACAGTTTGTGACTGCTCTATGAAAATTGAATGTTGTTCCCAAG
ATTCGAGTGTTCTCGTGGAGAGTCCGACTCTATCGACTTGCAGCGTCGTCACATTAAACT
TTTGGGCCTGTGTGAGATATGTAAGCTATGGCCGAAAACATGCAACATGCATTGATGCAT
TGCACTCATGCAAAAATGGTTTTGGATGGCAGCAAGGGACAAAATTCAGTTTCACTTGCC
TCATCTGCATCGATACATGGGCACGCGACGTTATCACCATCCAGAAAAAATGTTCCGGAA
TTTTAAAAAATGTTCTTGAACTTTTATCAAAATGTTTCAGATTTTTCAAAAAAAAGTTTC
GAAATTTGAAAAAATGTTCCTGTTTTAAAAAGTGCACATGAGTTAACAAATGTTCCCATT
TCAAAAAATGTTATTGTCTCATTTTTCAATTTTTATTTCACTTTTTTTCCTTTTTTCCTT
TTCTTAATTTTTGTTTGGCATTTTCTAATTTTTGTTTTGTATTTCAAAAACTATTCTCGT
GTTCAAAATTTTGTTCACAATTTACATTAAAATGTTCGTGGTTCAAAAAACGTTCCGCCT
TTCAAAATGTGTTCATATTTTCAAAAAATGTTCGGGTTTCAAATAATGTTCTCCTATTCA
AAAAACTGCACGATTTTCTAAAAAATGTTCCATTTTCATAAATTGGTCACAGTTTTCAAA
AAATGTTCTTGTGTTCACACTTTATAAAAAAAATGTTCCTGTTTTCTGAAAAAAGTTTCT
CTTTTTCAAGATTTGTTCAAAAATTGAAAACTTGTTCAAATTTTGTTCTCCGATTCTAAA
GATATTCATGATTTTAAAATGGTCGGGAACTTTAAAAAATGTTTGCCGTTTCAGAAAATG
TACGTAAGTTCAAAAACTGTTCTTGTTTTAGAAAGTGAGCATAAGTTAAAAAATGTTCCC
GTTTGAAAAACTGCTCACAAAAAGAGTATCAGAATTTGGAAAAATGTAGCTGTTTTCAAA
CAAAAATCATAGTTTCAAGTATTGTTCACATATTCAAATAATGTTTGTATTTTTAAAAAT
TCTTCAGAAACTAAAAAAAAATCCATTTATAAATTTTGTTCGTAAATACAAAAGCTGTTT
AAGTTTCAGAAATTCAAAAAACATCAAATCAGTAACCTTTTAGAGAAGGGTATTAGCTTC
GCGCGCCATTTCAAATGAATAAAGGTCATTAGTTCAGTTTGCTAGGCGCTTGCGTAAGGA
GCATGAGCTCTCTTCTTCGATACCTCCCTCACGCACTAGCTCCCCTGGTTTTGCTTCTCC
CGCGGTTACTCATGTTGGTAGGGACATTAATGCTCCGGCCCATGAGCGTGCTTGCTTTTC
CTTTTCAATTGAGCGCCCTGAAAGCTGGCTTGACCCAGATTTTCTTTTGACCGTCCTACG
GGCAGATTGCAACCATATGATACTTCCTCCATTCCTAGATATAAGAACATCCACAGCCGC
GTCCCCAATAGGCTCCTTCAAAATTTCCTTTTTGCCGCCGGCGCTAAAAAATGGCCCAGT
CACGTTTTCAAGACCCTGTTTTTCGTCGGTGATGGTTGAAATTGGCCTCGGCGGTCCCAG
GACAAACCTAGCGCGTTGGGGGCGCCTGGGGAAACGTTTTTGGCGCAAAACGGGTGTGTG
GACCCGTCGAGTCGGCGGTTAGGCACGTTCGTCGTCCTCTAGCCTCGTTTTTAGCGGGAA
TCAATGCGAAGGTTGCGTTGTCGGTAAACCTTCCATTGATTCTTCACGGGCGGCGCAGCG
AAGGCGTGGCGACGCACGTCCCATCCACTCCCGTCACGCGTTCACATGATGTCGTCCCGC
GTGCCGCCCGCCCGCAGCTATATAAAGTCGCCGCTCCCCTTGTCGGTGGCCACACACCTC
TCTCGCCAGACTCTCGTCGCTGACACCCTCTCCTCTTTTCGCCCCTTTCGTCACCTTCGC
CTTCTCTCCCTCTCTCCAATTGCCGAGCGCTACCCCGATGACGGGGCGACGGCCAACGGC
TTCGACCGCCGCCACCTGCACGAGTCTGAGGCCCGCCTCCTTTATGAAGCGGACTACCTA
GCAACGCCGAACATGCGGGTGTCGGGCTCGTGGAGGGGTGAGCGTCGGCGGAGTCTTGGT
GCCACCGCCTTCTGAAGCTGACCGACGTGCGGAGATCACACGCATCCGGCCATCGCTGCC
GGAGAGCTCGCGGAAGTTGTCGAGGTACGCCCCGGCAACAACACGTTGTGGACGGCATCG
GGCCAAAGAACCCAGGCTCGAGCCCGGCCCGGGCGTCGGGCCCAGAAAAAAAAAGGCCAA
GCCAACCCATCAGCGTAAAAGCTCGCCGTGCCTGGGTCCTCGGGCAGGGCCTATTCGCTA
AATCGTTAATACGGCGGGCCCGGGCCCAGACCGGCCTTTGGGCTTAAAATCTTCGGGCCG
GGCCGGGTATTCCAAAAGGAAAATGTGGTACCAGCACTTCGGGCCGGGGAGCAAGTCGGC
AGGGCGCGTCCACCGGCGGATCCCACGCCACGGGGGACCAGACTCCGGGAGCGACGCTTT
TGTTTCCGCCCGCCCGCCGACGCGTGGCCATGGCGCGAGCCCCCCCACCCCAACGGAGTA
GGATCGAGGGCCGTCCCGTCCCGTGGCCTCACAGCCACTGCCTCCCCTCTCTGCCTCGCC
CTATACATAGTATCCAGCTCCAGTACACATCTCACTGTATCCTACTCAACTGCTCCATCT
TCTTCTTCTTCTTCTTCTTCCTCCTGCTCTGCATCTCTCTCTTTCTCTCTGCGTGCCGGG
TGCCAGACGAGAGGAAGGGAGGATGCCTACCGCGGGGCTGGCGGCCGGGTCGAACAAGGT
GGACGTGGCCATCGACCTCGGCAACCCGCTGCTCAACCGCACCGTCGACGGCTTCCTCAA
GATCGGCGCCGTACGCCCCCCCATCCTCCTCCTCTTCTTTGATATCTTGCAATGTGTCTG
ATCCGGTCTGCCATTGGCAACACTGTGCGCAGGTCGGCGCCTGCAGGGTGGTCGCCGAGG
ACGCCTTCGACTGCCTCCACAGAGGTAACAACTAACTAACAAACGCATGCCCTTCTCTCC
CGCTGCACGGATGCGAAGGGGGTCAGGGCCTTCTTTTCATCTTCAGAGAAAACCGTAGAA
AATACCCGCGCGAATCTCTGGGTGAAACCATTGACATAGAACCTAGACGTGAAATAGTTA
GGGCGCATCTAGATGTGCTTCAGCAAAACCGTTCTTTCCTGTAAACAGATAAAAAAAGGG
GCTTTTTTTCTTTTCTCGATGAAGGTTCACATGTATTGCTCGCCAAGAAGCAGAGTAGCT
CAGGTTCTGAACGTGCCATGTTTCAGTTAACAATTAGCCAGATGCACTTGTCTATCAAGT
ACCAGCAGCTAGCTATGCCTCATGAAAAAGCAATCTTTGCAGAGTAATAGCTTAGGTTCA
GAACCGCCCAGGCTCTCGGTCAGATACCGGCCAGATGCTGCCTGTTGTTATTATCCATTG
TTGCAGACCAATATTTTTCACTCGTGTATGGTAGGACATACACCATTTTTTGTTGGTGCC
GTGCAGACAAACGTGACATCGCATTTATCCTCCTTTCTTTGCAGGGGATATCTCGAAGCG
CCAGCTTGAAGAGACGGTATATCAGTTTCCGCGGTGTTTTGTTTTCTCTTACCTAGTTTC
GTAGGCACCCGTGGCTTGATGCCATCGCTGTTGTGTGATTAGAGAGCATTATGTTGTACC
ATTTGCCCTGAGTTCTGCTACGATCTGAGTGTCCAACAACTAGATGTTCCACTCGTTGTT
CAGGAAATCATTAAATTGTAACTGCTCGGTCGGGTGGCGAGTAGTGGATTAATAGGTGAA
TTGGCCGATCAATCAGTTAATTCGCTGCTCGGTGACCCTTTGAGCAGGGATTACTTGGCT
ACTTAACTAAGTAATCAGCCAATTTTCCAAACATCTGTTCCACTAGTTGTGTACTGATAG
GCAGATGATATATTCTACGCTGGAACTGACTAAATGTTCAGTACTTCAGGCTATTTCAGT
AGCAGTGCCTAGTTTTAGCATACCCTCGTAGGATGATATTTAAGTTTTTTTTAGCAAAGG
ATACTGTTTAAATGGAGGAAAGAGAGCTTAACTGAAAGTTTAAGCCCCTGCACCACTGTT
CTTTTTTATAACCGCTCTCTACTTGTGGATTAGTGAAAATTCTGTGGCCTTATTTCTGCA
CCCGCGTTAAGGTTCAGGCAACTATATATCATTTGTAGTCCACTGATGTGATATTCTGGT
TTTTTATGCAGCTGAAGAAAATGTGCAAGGAGGGTGCATATTGGGGTAACTAAGTAGAAG
AACATTTATCTATTGTCTTATTTGGCTCAAAAAATGTGTTAACATAAATCATTCATCCAT
TCTTCTAGTTTCCGCTGACAGATTCAGATGTTTTTTCGACTAATCCGCAGGTGCTGTTGC
TGGGGTGTATGTAGGCATGGAGTATGGAGTGGAAAGGGTCCGTGGTGACCGTGACTGGGT
AATGATTCTCTGAAAATGGATGTTTCATGTTTCTTGCACTTAACTGAACCTTATGTGGAG
GAAAAAAATCTACCTGCATGACTGACTGCCTCCCCGTCGCAAACAAATATTATCTGCCTA
CTTGACAATCCACATCTTTCTTTTGTTGAGTAAGATCTTTAGCCAATTACTTAATTAGTG
TAAGAGAAGATTCAGTCAGATCCATGGCATCTCATAAATCATGATGATAATTTTAACTTG
TCTCCACACCCTGTCCTAAGATTATGCAGGTCTAATGATGTGCTAGCACGTTAGAAATCT
TCTTACCCATCAAAATACTATTTGCATTCATAATCAATATTACTGTTGCATGTTTTGTGT
CAGTCTTAGATTGTTTATTAATCCCTCTCTTTTTCCGATATTCCTGTAGAAAAATGCGTT
GATAGGAGGCATTGCAACTGGTGCCCTGGTCTCTGCTGCGAGCAACAACAAAGGGAACAA
GATCGCCCAGGACGCCATCACCGGAGGTGCCATCGCGACCGCCGTCGAGTTCATCAACTA
CCTCACCTAGCTGTGAGGCCATATCCGCGGCGATGTTTTTATCGGACAAGACTGAATAAG
AACTTCTTGACTGAAGCCATCCACCCTGTGTGTTAATAATTGGAGCTGTTTCCTCCAATG
TTTTTCCATTTTTTGTTGCCGGCGTTCTCATGTCCATGTACTTAACAATTTATTTTACTG
CGTGGTTTGAATCCTTCAGTTGTGATATGCTGTGTGCTGGCCTAGTTTGGTAGCATAGTT
TATTCAAAGCTCTAGTAGAGATCACACATATGCCCCCACTAACCGCATCATGGCTCGGTC
ACTGCCCTCACTGGTATTGAAACTAAATGATACTCCCTCCGTCCCAAAATAACTTTCTCA
AGCTTAGTACAATTTTGTACTAGAGCTAGTATAAANNNNNNNNNCTTATTTTGAGACGGA
GGGAGTAAATGGCAATGTTAAATTTTGCTTCTTTTGTACTCCCTTCATACGAGATTACTT
GCCGCTCGAACGGGTGTCTAGCAATTCCGGACATAGGGAGTAATTTTTTTTTTAAATGGT
TATATCCTCGTTAACGTAGATATTATGAATTCCCCGCAACTAAATGATAAATGACAATGC
TAAATTTTGCAACTTATCCTGTTACGAGGTCAAAGTATAGACATTCGACCTTTGTTTTGT
ACTTTCTTCATTTTTATTTACTTCGTATATTTGCTTTGACCTAAGTCAAACCTTATAAAG
TTTGACCAAGATTATAGAAAATAATCTGAACTTTCACAATAACAAATATATATGAGGTGA
AAATAGATTCAACAGTATTAATTTGGATCGTGGATGTTAATATTTTTGTGTGTAAACTTG
GTCAAAGTTTACGAAGTTTGACTTGAGACAAAGCTTGTGCCTCCTCCACCATGCTCTAAG
CCAACAAAGGCTATGGTGAAGAAATCTCCTCTAAGAAGGGTTAGAGTCATCAACGTGAGT
GAAGACGCCCCGGAGTTCTCTTTTCTCATGCCACTTCGCAATTCTAAAATCGATGTGATT
CAAGGCACGGTTTGGTTGTCACCAAGCAAAACCATCAGGCCATTGTTTGTTTCGGTTCAT
AGTCCTTAGACCATATGATTTAGTTCCTTAGAGCATCTCCAACGGCAGCGTAAAAAATCC
GCGCCCAATAATTTTTTTAACGCGCCATTGTAGCAGTTTTGAAGCGCGGGGACCGGAGCA
TCTGCAACAGACGCGCGCTAATGCGGCGTCCAATCCAGCGGTCCCATCTGCAGCAGCTNN
NAGTTTGCTGCGCGCGCAAGCCGGCGCACCAAATATGCTGCGCGCGATAGCGTATTTGAG
CGCGCGCCCAAAAAAAATTAGCGCGCGCAGTGTTTTGCAGCTTCTGCTGGAGCAGTCCGG
CGCCCAAAAAACGGATCTTTTAGCGCGCGGAGCAGTTTTTGGGCGCGTGTTGGAGATGCT
CTTAGTCTTGATCAAGCTTGTGTCTTTATGACCATTCTTT