morexGenes - Barley RNA-seq Database

Contig contig_442127
Source Contig contig_442127
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_442127 (5956 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_442127

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_60206	1	2055 bp	MLOC_60206.1	Available	Available	LOC_Os11g15570.1, FRAME:-2, EVALUE:0.0, 13111.m01608 protein Ser/Thr protein phosphatase family protein, putative, expressed
CDS Structure of MLOC_60206

Contig Sequence (5956 bp)

>contig_442127 5956 assembly3_WGSMorex_rbca.fasta
ACTAGCATCAACTAGAAGATGTAATCAACACTACTAGCAACCCACATGTACCAGTCTGAG
GTTTTGGGACAATGATTGAATACAAGATATGAACTAGGGTTTGAGATGAGATGGTGCTGC
TGAAGATGATGTTCAAGATTGGTCCTCCCACGATGGAGAAAGCGTTGGTGATGATGATGG
CTTTGATTTCCCCCTTCCGGAGGGAAATTTCCTTGGCAGAATCGCTCCACTGGAGAGCAA
AAGTGCTCTTTCCCATGTTCCGCCTCGAGATGGAGGCGCTCGGTCCCGAAAGTCTTCTCT
ATTTTTTTAGTTCAAAACCCCTATATAGCACAAGATGGGCATCAGAGGCCACCTATGGGA
CCCATAAGGCAACAGAGCATGCGTGGGGGGTGGCCATGCCCTGTTGCCTTGTAGGCAGGT
GGTGGCCGCCCTCTGGTATTTATTTGCTCTAGTATTTTTTATATATTCCATAAAAAATCT
CCATGAAGTTTCAGGTCAATTAGAGTTCTGTAGAATAGGTATCTCCATTGTAGCTTTTTC
AGGTCCATAATTCCAGTTGCCGGTAATCTCCCTCTCCATGTAAATCTTGCAAATTAAGAG
AGAAAGGGCATTAGAATTGCATCACGAGGTGGAATAATGACCAAAAACAATATAAATAAC
AGTAGGAAGTCATGGTGCAAAATGGACGTATCACTCCTGCCCAGGTTCCGCCTCGAGTCG
GTGGCGATGAGTCTTGAGAGTATTCTCTTGACTTTTTCTAGGGTAAAACACTTCATATAG
GAGAAGATCACCGCCGGAGGGCCAACATGGGGCCCACAAGCCTCGGTGGCGCGCCCTTAG
AGGGGCACGCCCCAAGGGCTTGTGGCCCCACCAAGGCTCGTCACGGGTGCTTTTTTCTTT
TAGTATATTTTAATACATTCCAAAATAAAACTCCATAATTTTTCACGTCATTTGGAGCTT
CAGAGAATTGTTATCTCTCTTGTAGCTATTTTTCGCCAGAATTCCAGCTGCCGGTAATCT
CCCTCTTTTGATGTATCTTGCATTTTCAGAGAGAAAAGACATTTAGAATTGTATAATAAA
AGGTAATGTGACTCAAAACATAATAAATAACAGTAGGAAAATATGATGCAAAACGGACGT
ATCAATACCACTGTCCTCCTAAGCATCCAACCACTGGTTGGTTCGTGTCCATGTGTGCGG
TTGTTCAGGGGCTTCAGGCCCGATCATAACCGGGTTACAATCAGCATGTGTTTATGCGAG
TGCTCAAACAATACTCCCATGGAACTGTAGTTTTTTCCTTTTCTCGTGGCTTATGGAACA
CATAGTTTACCAATACCACAACACCATACAAATGATCAATGTGAAATTAACCAACGAGAG
GTTTTCTTTCTTCCAACGGCGATCTCAACCCCTAGCTGCCAGGGAGCTTTCTCCCACCGC
CGTCCTTTAGTGTTTTAGTGTCTCCCCTGCGCCCATGACATCGGTCGTCGGTGGGAGGGG
GGTCGTCGGATCCACGCGGGTGGATCATTTAGGCATTAGTTGCTTAGTCTTTTAGGTTGT
TCATCGCCTTGGCTTCGGTGATGATGATGGCGACCCTAAATAAAGAATCTTGAAATCCTT
CCATGACGAGGTGATCCATGTTTGGGTAGGATTTGGAAACCAATTTGTCCAAACAACGCT
AGAATGGTGGAGACAATATCCTCATGATGGACTTGTGTCCTCGGGAGCCGGCGTTGCCGG
CGTTTTCTCTAGCGCCTACGTGGAGCTTGGAAGGTAGTCCAGGAGCGGATACAAATTATG
GTCTGCATCGGCGGCATCTGGGAGATGGGGGATTGTGTAATGGGTTCATGGTTCGTGGCA
TGCAATTATGGTTTCCTTTTCCGACGTCTTAGTCGTGCGGGGATGGCAGATCTGGAGTTT
GATGATGTGTTTGAGATGTTGCCCATGTCTGGTTCGTTCAACCGCAATCGCTTCGCCTTT
GATGAGCCAACTTGAAGGTCCGTAAAACTGTATATCACAGATGGAGCCGTGTCGAGCTCG
AATGAGGAGGTGATCCGTCATTTTTTCTCTTCGATGAATTTTTAGGTGGTGCCAGAGGTA
GGTGACGAGCGTTAGTGTCAAGCTCAGAGGACTCTTGGGTCTTGATTGTATCGTGTAAAG
GCTAGCATTATGTTCTTTTCGGTTTTAGTGTTGCCAGGTCAGTGTCTATGTAACTTGTAC
GATGATCTTTATATAAATGATACATGCAAAAAAAAAATATCAATACTCCCTCCAGCTTTA
GTCTGCATATAAGATTTGTCTGAAGTAAAGTTTAGCCAACTTTATAATAAAAATTCAACA
TTCACAATACAATATCAACATCATTAGATGTGTCATGAATTCAATTTTCATAGTGTATAA
CTGTAATATCGTAGATGTAGATATTTTGGTATATAAATTTGGTCAAAGTTTGACTTCGGA
CAAATCTTAAATCTTATATGCGAGGTGAAAAAGGACCGGTGGGAGCACCAATGAACAAAA
TGGAATCGTACAACACTTAGCCCAATCCAATGCGCCAAATATAATGTAAACCTTTCCACA
ATAAAAAAACATGCACCAAGAAAGAGTAGAAGGCAAAATAGAAGCTAACTTTTGCCTCTT
GGAAAAGATGAAATCACCAAGTTAGGTTGTCCTGTAAGCATTCGTTGACCCGCAGGTCCA
AATTTCCTTGATAAAATGATTTTCCAGCGATCTTTTCATAGATCTGGCCTACTTTTTTTC
TTTTTGGAAGAAGACATTCAATTTTGATTTGACTATGGAGGTTGAACAGAATGCACCTAT
GGCCCTCTTCCTTAAATCTACAACCCAGAGCAGTAAATGGATTTTGTAAGTTGTTGATGC
TTACAGAAAGCCTAATTACCAACAAGAAAACGAGAAGGACCGTGATCTTTTCCACCATTT
CAAAAAGAGAGGAATTTAAAAAAATTCTGCAAGCTCCAGGGTTCAAATATATCAAGATTG
ACAGGAAGCCACAAAATGCAGCAATACTTTTGCCGAGATAAGTTGAAAAGTAAAATTTGA
CAGTCACCATTCACCACTATCAAACAACACTAGAGACCAAGTCCACCATGTTAACCACGA
CACAATTTGGATTATGCGCCGCAAATATGAAGGAAGTGGAGAAATCGGTGTGCGAGCACA
AGCCTACAAACAAGTGGATAGAGCCATGTGTCCATATCACCAAGAACTGCCTTGAGGGAC
AGGGAGGTGTAAACATCAGAATGTGTGAAGCACATGAGAAAATTGCTGGAAGAAACGTGG
AAAATATAACGCAAGAGAGGAGCGAACATATAGACCAATTCAACAAGAAAACTTGTGGAA
AAACTGGGAGGCTACAGATGCAAACCAAACTCCAAATAACTTTTGTCTGTCAAATTGCTG
TTCCAATGGGCATACTAATCAGCTCATCCCTTTCCTTGTCATCACAAGGGGACATGGCTG
TGAATAGACAAACATGGAATCTTCTTGCTCATGAAATTGATAGGCTATGCATGTGATACA
GGCTGCCAACTTAGGATATGTTAAGTATGCACTCAGATGATATTCATATTTGGGGATGAT
GCTCTTAATTTTCTGTTAGCATTGCCTCCTATCTGGTGGTAGAAAATATAATTGTCTGAC
TAGGATATACAGTATTATACCACATCAAACAGCATTGATGAGGAGCCTGGAGCGATGCTG
AACAATAAACTAAAAAATGAATGGGCATGTATCATGCTTGCAGATCAATCAAGAATCTAG
AGTCGGGTCAATGTGTTTATGAATATAGCAAAATATTATGCATGATGCACTGGATTCAAC
CTCCATGAGGCAACTCTCACTTACGTACAAATTTCTGATGCCCACTAACTTCTCTCGTCT
GGTCATAAACTTACCGTTGTCGTGACGGAACTCACTAGCTGAGACAGTGGAGGACCATTT
CCACGATGTTCTCGTACTTACCTAACAACTTCAGTTCCCCCCTTTTCAGCTGGCCTCTTG
CTCATGCTGGCAATATTTGGTGTTTGGTTTCTACCATCACCAATCAGCAATTTTACTGTT
TGCCTAACCGAAAAATGCTTCTGGTGTTGGAAAAAGATAAAACAAAATGGATGAACCGTT
GAATCCTTGAGATACATGACAAGAATCACAGGCTTCAATTCAGGAGTTGGAAGAGTAAGC
TGAGTGAGATAGGCCTCACCACAATTTAGGTTTGAAACACTGTAAACATGGCTGCTCGAT
GAAATTCTTGATATTTTTGCCAGGGTTAGTGATCAGCTGATGGTTTTGCACACAACACTA
TTGACAGCACAGTGCCACAATTATTATCCCAGGCCCAGATAGATCCAAGCTGTTCATTAT
CATCAACACCCACGGCAGCATATAAATTATTGACAACACAAACACGACTAAACACTAAAC
AGAACATTTCAGACAATGGCCAATAATTGTATACATCAGCAATCTGCAATCGGATTAGCA
CACCCTTGTAAATAAGGGGAATTGATAAATCAAGGTTGCTTTCCTTTCTACCGTGGATAA
CCATATTGAATCAACCAACATTACCTTCAACTGATGCCTCCCACCTCTAACCGGAGTTAC
GCCCAGTTATGCATGTTAATTCAATTGAACTAAGAGTTGGCAAAATAATCTCTGTCCTCA
AGTTACCCCTAAACTAAGCCTTAGCTTCTACACCTTTCAATACATTGCTCTCCCTTACCA
ACAATGCAAGTCCATCCTTTACCTCCCCTTTCTTCTCCAATGTCGTGGCAGATTTCTCCG
GCTTCTGCTTCCGGTACTGCCAGGCCTCTGTTGGATCTGTTGTGATCACCCTCACCTCTG
ATCCACCACCATTGATCTCGAGCACCTCCGGCAGCCCATTACCACATCCCCTCGACAAAC
CAACATCCACCCTGACGGCCTGTGCCCCGCAAACTGCATTGATTCCCTCGCTCTGTATCG
TGTGCCCCATCACCATCCTCTTTGCTCCAGGGATCATCCCAAGAACGCCCTGAAGTCTCT
GGCAGTCGCAATTGAAGCCTTCAGAGAACCTCCTGAGCCACACTACAGCGTCTCGGCCGC
ACAGATACTCTGGCGCCCTGGCATTGTCCCCACGCTCACCCCGGATCCAGTCGCTGACCT
CCGCGTTGATCCTCTCCAGGCCATACTCGACATTGGCCTCAAGAAGGCCGCCATGGACGA
ACACCGAGTCGCCCACTACAAGGACGGTGGGCAGGTCAGCCAAGAACCTCCGCGCGATGG
GGCCGTCAGGGCGGAGCGCGGCGAGGCGGGATCGGATGCCGTCCCAAAACTCCCGCCTGA
TGCCGGGGAAGGCCTTGGGGACACCGAGGAAGGGGTTCTTGGGCTGCTCGAGCCCGCCAC
AGCGGCGCTTGATGGCAAGGCCAGCTCGGTACCAGCCAGCCCAGCCGGAGAACTCCTGCA
GGCCCTGAGGCGTGACGAAGCGGAAGTCGCCGGACACGTTCATGACCTCGTGGTTGCCGA
GGATCGGGAGGAGCGCACCGCCCTGCGCGGCGGCGGAGATGCTGAGGCGACGGAGGAAGT
AGAGGAGGCGGAGCTCGTCGCCGCCGCGATCCATGATGTCGCCGAGCTGGACGGCGAGGG
TGGGGCCGGCGGACCAGGAGGTGGAGGTGGCGCTGGCGCTGGAGCCGGGGCTGTTTGCGG
AAGGCAGGAGGCCGGCGAGGCGGAGGGCGGTGAGGGACTTGGGGAGGTCGCCGTGTCGGT
CGCCGATGGCGACGAGGCGGGATGGGGAGGGGAGGAAGGGGGCGGGGGTGGGGGGAGGAG
GAGGAGGCGGGTTGGTGGGGAAGAAGATGCCGGAGACGGCGTGGTCGACGAAGGCGTCGG
CGAAGGCGGAGACGACGGCGGGGAGGGCGCCGGGAGGGGGGGCGGCGGGGGGGGGGGGGG
GGCGCCCGGGGGGGGG