morexGenes - Barley RNA-seq Database

Contig contig_442068
Source Contig contig_442068
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_442068 (7159 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location
Predicted Genes from contig_442068

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_60174	1	1548 bp	MLOC_60174.1	Available	Available	LOC_Os09g37120.1, FRAME:+2, EVALUE:0.0, 13109.m03675 protein pyridoxal-dependent decarboxylase protein, putative, expressed
CDS Structure of MLOC_60174

Contig Sequence (7159 bp)

>contig_442068 7159 assembly3_WGSMorex_rbca.fasta
TATAATCTATCTTCATAATCCAGATTATTATAATCTATTGTGGTTCCAAACAGGGCCTTA
GTAGCACTTTTACCTAGCAGCTCTAAAGATCTCACTTGCTTGTGTTCGATTAGCCTTGTT
GCTAGCATCAACTTCTATAAATTAGGAACGACGATGACGCATGTTTTGGGAAAAAGTGAT
GATGATAAGTATGTGTGCTAGTTCGACGAGACACCCTTTGTAAAGGTGTGTGTGAATGTG
TGTGTCGTTCAGCAGTTTATGAAGGTTTTCTCAATTTTCTGTTAATTAACTTGATAATTC
TTTTTTATTTAATTAATAGATGAAACAAATCTTTTACCTGTGTTTTGAAAATAAAAATAA
TGATAATAAGTTGTGTCTCGCTAACTAGCAGCTCGCACTTGTCAAGTGACAAGTGCTTGT
TATGCTTCCCAGGGGACCAAGATCATGTGTTCCAGCTGCAGCATAAATTGCTCTGTTCTT
TTGCAACCAGCGGCACTCCAAGGTCGTCAGCTATTTGCACTCCCAAAGATAGAAAAATGT
TCTGCATTTCCAGTCCTAATTATTTTGCTCATGTGATCTTTAGTCCTCATATGAAACACG
CATCACCGACTTGGGTAGTCTTCACTCTTTCAAAGTTAAACTTGATGAGTGCACTAGAGG
AGAAAGTGTCTTGGTGGTTAGAGAAGACATGAGAAATTGTTTAGTCAGCGAATGAAACCC
TTTTATGGCAAGTTCCATTAAGATTTTCATTAGTGTCACAAGCTGAATTTCTTAGCTAAA
CAACACATATATTTATGAAATAATAAGGTAACAACCAATACACATGGCAACAACAAGAGA
GCATGAGACAATGAAACCTTGCTGAAACTTTGCAAAGAACACCCCTACAAAAGAAAATAT
CAGCTAAGTCCTTGGAGGGCCTTGCAAAAGCCAACTTAACAACATACCATGAAAAAAATC
AACGATATTGAGGTGTATGCCAGAGAGCCAATAAAGGCAGAATGATCCATCTAAGTCGAT
GAAGAGGGCTAATCTGAATGTCGGAGCCCAAATTTTGGTGCCAAGACCGGGGGCTTGTCC
CCGTGCTTCCCGAATCCTAGATCTCCACATCAATCCGTCGATGCCTCGCTAGTTACACAT
GGAAAAACTAGACTATCCGCCCGAGAGGGTCTGCGGAATACAAAGCCCGCAAACTCCTCC
TCAATGTTGCCATGGATGTCGTAAAGGTGTCGTCAATGTCAGGGAAGACTTATTCTACAC
GGGGAAGCCACTACCAAACAATCCTGCCACTAGACACACAAACTCCGACTCTAACTATGC
TGCCAAAGAAGAGGATAGTGCCTCCATCCAGTCGTCGAAGCACCAATTGAAGGGAGATGA
GACCAACTACCTCACCGCTCACATTGGGAGAAATTGAGTTGCACCCCTAATCACCTCGTT
CGTAGGAAAGAAATAAACATCCACTAAATTTGAGTTGGTGTTCACAACTATTCTAATGAT
GGACATGATCTAGGACAATAGCAATGACAACAAGAGAGATACGTGTTGACAATATGAATG
AATACAGGGGCGGACCTAGGCAAAATTCTGACTCGGGGCGCTACATTTGACCGGGGGCAC
ACCTTCTACAAAGTTCCTCATTTTGAAGTGTTTTGTTTTAAAATGTGCAAAAATACAAAG
GGAATTCTAAAAATTGAGTGGGGTCCTAGGCCCCCACTCCGTTGTACTTGGGTCCGCCCC
TGAATGAATACATGGCATCAATATACAAGAACGGTTACTAGGCCACATTAGGGGGGTACG
ACGAGAGCGGGATTTCATATGTTGGGTCCATTTGCACCCAAGTGAACACCAAATTCTGAA
AAACACTAAACATTTTTTTTTTAAATATGAAATAAAATTATACATCAAATATGAGTGCCT
CTTATAGGCGCTAGCAATTTTTGCGCTGAAATGGCATCGGAGGAGTTCGTGACAAAAAAG
CGGAGCTCAAAATATTCAAGCTACGATTTTGTTTTTTGTCTCGAGCACCTTAAATGTCAT
CTTAATGTAAAATTTTGCAAGAACCTAAAATTATGTTTCATCTATGGTCTCTTAAAATTT
CAGATTTTCAATTTTTTGATATTTTTTATGAATTCTCTACTAGGGGGGAGGCGGAAAATG
AGCGCGGGATCAGAGTTTTTTTTACTGTAGCGCAGGATCATAATTAAATTAGGAATTTTT
TGTTTTTATACTCTAGCTTTTACCAATTTTGCTTATGCCACTCTAGATCTTGACATTTCA
CTTTTGGCACTCTTAGCTTTTGCCATAGAATGGCAATTGCGATAATTGTCCAAAGCTAAG
AGTGACAAAAGTGAAATGTGAAAATCTAGAGTGGCATAAGCAAAATTGGTAAAAGGTAGA
GTGGCAAAAAAAAGTTCCCTAGTAAAATAAAGCAAACCAACAAGACGCCAAGTCATAAAA
TGAAGAATAATATAATACAATATAGGTGGTGCTATAAAGTTTTTAAAGAAGTTTGATATT
CCAAAATTAAATTTTTTGACACACTAAATATATGAATAGGGAGGTTTATACCATTAAAAT
CAGCCAACCAACTTGTGGTTGGATGGTTAGGTGTACAGTGGTGTCTCCAGCCAACAAGGG
TTCAAGTCCTAAATTTAACACTGGTGCTCACATTCTCTTGTATTTTTTAGGCCTTCTCGT
GATGTGTGTTCACTCGTACGAGATGTTCCCGTCGACTATATCATGACTTCGTCAGTCTCA
AGATGAATGTCGGTTCAGTTTTTTGAAGATCCTTATAGAAATAGGGTGTGCACTCCTAAG
GATGAATGTATAAGTGTTTGTGTTTGTATTGTATTCTTAACTATATATTAAAATTCCAAG
CCTATTTGACACATTCAACGCTGGTTAAATAGCAAGTGAGCAAACCGACACACACCCCGA
CCTGCATTGTGGGCCCCACCTGCATCGTGGGCTAGGCCCATTTTCATTGTTTGAACTTCA
AAAGTATTGATTGGTTTGAGATTCGAAATCCCAACCTTAATCTTTCCTTTCAAACTCAGT
AACCAATTAGGACACACCCCCTACAAAAACTAACCAATTAGGACACCTCACCAGTTGTGC
ATATAAACATCTCTTTAAGTTCTTTATTCCATGTCTTTACAGACTCTGTTTTTCTTTTCT
TTCTGTTTGGATGTTTTTTCATCAATTTTTTACCTGGATTTTTTGTATTTTCCTTTAAAA
TACCTGACCTTTTTCAAATTCGAAACTTTCTATTCATATAATGAACTTTTTAAGACTCAA
AAATTATTATTCAAATCGTGAACTTTTTGTTGAAGCCCATGATTTTCCATTTTCATGATT
TTTTTCAGAATTGATGAAAAAATCAAATTTGTAGTCATTATTATTTTTTATTAAAATCCT
CCAACTTTTTCCTCAAATCCGTGAACCTTTTAGTAGAAATACTACGAATGTGTTTTCAAA
TTCGTGAACACTTTTGAAAATTTATCATGTTTTTCCAAAAAAACATGATTTTTTATCAAA
ATCGATGAACATTTTTCAAATCAGTGAACATTTTCTTGTCAAAATCAATGTTTTTTCTCA
AATCCATGTATGTTGTGGAAATTCAACTGATTTTTTTTCCGATTCATTATTTCTTAAACT
CAAAGAGATTATTATTTTTTCAAATCAGTGATTTTTGCAGAAATCATGAAAATAATCAAA
TCAATGAATATGTTTATTTTTGTGTATTTCTCACATTCTTGTTTTCAAAAAATGTACGTA
AAATTCGTGATTTTAGGAATTTGTTTTCAACTCCATGAACTTATATTTTAATTCAACAGT
CGACTGTCGACCAGTGAATTATTGACCAAAAGCGAGCAAGGTGCGCTCTTGGTGACACCC
TAATGGGCTAGCCCATCTATGCAGATGTGTGGGAGCCCGGAAGATGTTCATAGGCTTAAC
ATGCCGAACACTAGCTCCTTATTTTCGGCTTTCCAATGGTGTTATAGATTCTTCATTGGT
TTCATTTGAAAATTTGGATTAAGCCCAAGTAAGACGCCCAGACCTAGTAAATCACATTCA
ATGTACCAGGCTTAAAACTCGATTTGCTGGCCCAAAATGGACAGAGACTTCCTTTTTTAA
CATAATACTTGTGCAGATACTTATACATAAGCATACATATTTAGAGCATCTTCAACACTT
ATGTTTTTGTACACCGGAGACAAAATACAACGCTCCAGCAAACACTGTAAAATAGAGTGT
GCACAAAAAACTTTAACGTTGGGCTGTAAATCTTGGAAGTTCCCGAACTGCAAATCAAGG
ACGTTGTGTGTCGTTGGGTGCTGCAGGTGGGACCGCCGGATTGGACGTCATGTTTTTTGC
ATCTACAAAACTTCTTTGTCGCTCTGCGCGTAAAAAAATCTATTTTGACGCTCCAAGAAA
ATTAACGATCCGCGTTATCGTGCGTCTATTGAATATGCTCTTAACTATATAAGCATATAC
ACACACATTCTAGTTTTATGATCAGTTATCATAGAATGAGGGGATGTTTGTTTACATTCT
AAGGTTATGACGCCTAACCTTAGTTGTGCCGCAACATCTTAACCATGTGTTTGATTCATT
CATTGTTATATATCTGTGGTTTGTCATACTTTCAGACAACATGATCCACATATCATAAAC
TTACTTTTTTACCAAATTTTATCACACTTACGATGATCATTTTATTAGTTATCCTTTTCG
TGGCAGACACACTTTTTGTAGTCATGAACCAAACAGGCATTGGATGGACGCATCATACAA
AACCTCGGCAACACGTGCCACAAACATATCATAGTACGTCTGTACTGTCCTCAAAAGAAA
GTGCACACACCATGCGCACCTTGCCATCTTTTTTGACCGGACCCGACACAGAGTCCCGGA
TGTAGCAAAGCAACGAAGAAGAGACCTCGAAGCAGCCGCAGCAAGCGACGAAGTGTTCAG
AGTCGTTGGCGTTGGGCCGCACACCACACTGCAACGTTTCAGAGGCAACGGGGGACGGGG
GACGGGATGCCGCCCCCCAGTGCGCGCGCTCCCCCCAGCCTACCTACCGTTGCACACCTG
CCGCAGCGTCGGAGCTCTCTGACCGCGCACCACCAAACCTAACCCCGGCCGCTTCTTCTA
GGTTCATCCTTGGCCACCAAGCCGCCGGCAGAGGCACCAGAGCGCTATAAAACGCGCCGA
GTCCGTCGCAACTAACAAGCCGCACACGCCAAGAAGCATTCCCCCGAGCCAGCGATCTTC
TCGCCGCATTCCACACTGTTGTCCGTGCACGTGCGCCGGCCCGAGCTAGGCTCTCATTGT
TTAAGTGTGACCATCAGCACAGTCGTCGTCGTCGTCGAGATGGTTGGGAGCAGCCCGATG
CAGGCGGTGCTGGTGGCGCCGGGGGTGAAGGACAAGAAGGTGCTGGCGTTCAGGCGGGAC
GCGCTCAAGGAGAAGGACGCCGTATCCGCGCTCATGCGCACCATCGCGGCCGGCGGCGTG
CGGAGCGCCTTCTACGTCTTCGACCTCGCCCGGGTCGTCGACCTGTACCGCGGATGGCGC
CGCGCGCTCCCCGGCGTGCGGTCCTGCTACGCCGTCAAGTGCAACCCGGAGCCGGCGCTG
CTCGGCGCGCTGGCCGCGCTCGGGGCGGGCTTCGACTGCGCCAGCCGCAGGGAGATGGAG
GCCGTGCTCGCGCTCGGCGTGCAGCCCGGCAGCATTGTGTACGCCAACCCGTGCAAGCCC
GAGGCGCACCTCGAGTACGCCGCTGAGGTGGGCGTCAACCTCGCCACCTACGACTCCGAG
GAGGAGGTGGTCAAGGTGAAGCGCTGCCACCCGGGCTGCGAGCTCATCCTCCGCATCAAG
GGCCCCGACGGCGGCGAGGCCAGGGTGGACCTCGGCACCAAGTACGGCGCGCACGAGGAC
GAGGTCCTGCCGCTCCTCCGCGCCGCCCAGCGCGAGGGGCTCAACGTCGCCGGCGTCTCG
TTCCACGTCGGGAGCGGCGCGTCCAACACGGACGTGTACCGGGGCGCCATTGAGGCCGCG
CGCGGGGTCTTCGACACGGCCGCCGCGCTCGGCATGCCGCCCATGCGCGTGCTCGACATC
GGCGGCGGGTTCATGGCCGGCCCGGCGTTCGACGAGGCGGCCGCGGTCATCAACGCGGCG
CTCGAGCGCTACTTCGGGGAGCTTCCATGCGTGGAGGTGATCGGCGAGCCGGGGAGGTAC
TTCGCGGAGACCGCCTTCACGATGGCGGCGCGGGTCATCGGGAAGCGCACTCGCGGCGAG
GTGCGCGAGTACTGGATCGACGACGGCCTCTACGGCACCCTCAGCTGCATCCCCATGGAC
CACTACGTGCCGCGCCCAAGGCCGCTCGCCGCGCCGCGCGCCGGCGAGAAGACGTACACG
TCGACGGTGTTCGGGCCGACGTGCGACTCCCTCGACACGGTGGTGACCGGGTACCAGCTG
CCGGAGATGAGCGTGGGGGACTGGCTCGTGTTCGACGACATGGGCGCCTACACCACCGCC
TCCGGCTCCAACTTCAATGGCTTCTCCACCTCGGACATCAAGACCTACTTGGCCTACTCC
AGCTGACATGGAACATATGATGTGGACACGTACCACGTAGCACACGCCATTCGATTTGTT
TTCGCAGTATACAAAATTGTTAGAGTAAAACGAGATTGAATGAAAGTAATGGACGATCAG
TCCTGATTTTTATTGATTCTCAAGTGTATATACATCTGGAAGAGGTGCGAAGAAGAGGTG
TCTGTTCGGAGGCATCCCTCCAGAACAGGTGCATGTTGGCAATAGAGAGAGAGGAGACAC
GACCGTTCGGGGTTGGACACATCCCTTGGCTAATTAATCTACTAATTAATTTCTAACACT
CCCTCTTGTACAACACCGCTCCTTGAATGTTTCATCGTTGAAAGCTTCTTGCGTATAGAT
CTTCCTTCTTGAGAAATCTTTCAGATAATCTTGAGAGTCTCCCCCATCTTCCTTCTTGAG
AAATCTTTCAGATAATCTTGAGAGTCTCCCCCAAAAACCCTGTGGGAAAAATATGAGGAG
AATAAAGTAGATATGTTGCTAAAACTCCTTCAACCCAGTGGGAAAATAAGAAGAAAATGA
TGCAACATATGATGATCAT