morexGenes - Barley RNA-seq Database

Contig contig_442059
Source Contig contig_442059
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_442059 (6882 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_442059

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_60167	4	2040 bp	MLOC_60167.2	Available	Available	LOC_Os05g30340.2, FRAME:+1, EVALUE:0.0, 13105.m03096 protein expressed protein
CDS Structure of MLOC_60167

Contig Sequence (6882 bp)

>contig_442059 6882 assembly3_WGSMorex_rbca.fasta
TTTTGGGGGGGGGGGGGGGTACCGAAGCACATACTTATTGAAAGTGGTAATGATTTTGGT
AGTTCATATTATTTCTACATGTAGGCATTCACTTTTAGCCATCTCTGGAATTTTCTCATA
TGGGACTACTTTGGCAACTATTTACAGTACACCTATCATTTGGGTTCTTAACAGTTTCAG
GTGTCTCACAAAATTTACCGTGGACGATTTCTGTTTATGCCTACTCAAAATTTTGTTTTC
CGCCATGCCATACACCTTGTTCTAAATGTTATCATGAGTTAATTTTTACTGAAAATCCTT
ATGTTCTCTTAAATTAAGCAGAATATACAGAGGCTAAAGTCAACCTTAAAATGGAGGATG
CTAATGCAGTAGTAGATTGGAATGTTGACATTATTGGCCCAGATGGTGGTAGTGCTTGCC
GCAAATTGGCAAAAACTGAAGACCCTGATGCCACGGAGTGTTCAAGTTCCTTTGGGGACA
CACTATCCGGATCTCAGGATGATGCAAAGCCTTCAGAGATCAGTGACATTGAAGTAGACT
CACCATTCTGCCGATATCCTCATAATGGTGATGCTGCTGCGCTCTTGGATGCAGCTGCTT
CTGACAATTTGGATAGATTATTGAAGTAAGTTGTTTGGGTAACTGATTACCTCCCAACCT
TGTTTTTCTGCCTTAATATAAATGTCAAATCATGTTTTCAGCAGTCGCTCATCTCGTGAT
AGACTTGAGAATGAAAATTATGGTAAAAGCAAAGTTACCCTTATAGCATTTTCCTTGTGG
AATCAATTTTTCCACTCAGGCTAAAAGCACTCTGTTATTACTCATTTGAGTCGTAATTGC
TCTTATCTGGATGATATTTTTCCCTCTGAAAATTAGTCAGAAAACTTATCTTGAATGGGT
AATGTGAGACATGAATTTGTGGTACTTAATATGCCAAACAATTGTTAGTCTGCCTACAGT
TTGAAAGGAGCATGATGTTAGCCAGTGAGAAATTAAATAATTACAAATAAAGGCATAGTA
ATTAGATAGAGCGTCAGCTGGAGAACAGTAATATATTACTCCCTCTGTCCCATAATGTAA
GCTGTTTTTCGACACTAGTGTAGTGTCAAAAAACGTTTTGCGTTATGGGGCCGAGGGAGT
ACATGTTTGGTGTAGGCAGAGACTAGTTTGGGTCTTCTGTCAGTTCAGAATGGATTGAAA
GTGCATGCCCTAAGGAACTTACAATGCACAAGCGATTTATGGAGTACTTTAGATCAATTT
GCAGTTGAGTCTGCATGCACGGTTCCTTGTAGATATATTTGGTGCTATTAGGGCATGAGA
TTGGTTTCCTATTGAAGGGCGATGTTTCCTTCATCAAACTCCTTTTGACCAGTTTCTAGA
CTTCATCTTTGCTGGGCAGAGCATTCGTACTCCAATATGTTTAAGTCCAGTGTCCAGTTA
GTGCGCACCCTCCACAAGGTATGGGTCCATGCAAACATAGCACCCTGCTTACACTTTGTC
TCCCCTTGTTGTAAAGGTGTTAATCAGGAGGTGCTACTTTTACTTTTAGACCCAACTAAG
CATTATATGCTAGTCACTTTAGACTTTTAGTGTGGCCCATGTGGGTACTATACCATGCTA
TAACTCTGTAACCATATAGCCACATGGTCCAGGCTGCAAAAGAGTCAGGTGTCACTTTAT
ATTTAATACCCATCATTTGGGAAAATTCTTAGTGATAAAAGAAGCATGTCTAGCGTCTGA
TGTAATTGATTCCTGAAAGTAGGACTTAACAATATCACAAGTGAAATGTTCACTCTTCCC
AACGCACGTGCTGGCTCTAGTTTGTGATATTTGCTTTAAGCAAGTAGATTGATTAAAGCT
GATGACTTTCCCAAACCCTTCTTCATCAAGCTAAGGCCCTTGCAAGTTTGATGATGCCTT
TACTTTAGATGCATAATATGCCATTCAGTCTGTGTGCGTTTCTAGTTCTGTAGTAATGCC
TTATTTCTTGGATTCCTATCTGTGGTGTTATCTCAGTGGTCTTACTATTAATATGTGGCG
CAACCGCGCAAAGCATATTTGAGTATTTAACACAACTTATCATCCATTACAGAAAGAAAA
AGGTGACTGATCATTGGAGAAACTATATCAGCCCATTAATGTGGAGATGTCAATGGTTAG
AGCTACGGATGAAAGACTTGCAATCTCAAGTATCTAGATATGACAGGGAGCTTGCAGTAC
TTAAACATGAGAAAGAGTTGCAGACAAAAATGATCGAGTTGGACTGTTCATCGTCGAGAT
CAGTGCCCTTCTCTTCTCATTGCTGCAGGAAGACTATGAAGAGGAAGAAGAGAAAGAGAA
ACGAGGAGAAAATCAATGCTCCATCATACATCGCAACCCACACCATATTGTCTTATTACG
GTAACCATTGTGTTTTACTTCACACAATTTACTACAAACTGCCCTAGTGAGAGCTCATTA
CAATCGTCCTGCAGAAAAAGAGAAAACGGAAGGGGATGGCCCTTCTATCGACGACAATGG
AAACTTAGGTAAGACTGGCAACTGCTTCATGATTGGAAACAAATATGATCTCTTGAACAC
ATAAAATGCTAGTGATTGCATTTTTCTACTTTCTGAATTTGTTTTCCTAGTACTTTTGTC
CAGAAAATAGTGTTGCATACTCACAAAGATAATGATAATAGTAGCACGCTAGATATGATG
ACTCAACTAGTAAAAGTTATACTCATAATTGCACGTCAAGGTCGGTTTAACAAGAAACCA
TACATAGATCAATGCTCTATTTGTTTTGTATGTAGCAGACGAGTTCACAAAAGTTTTTCT
GACCTTTCAGCAGATGACAGCACAAAAGGAAATAATGACGCTGACTGGCTACTTGGTAAT
GGAGACGATGCTACTGTCGAGCAGATTCTTTTAAACATTCAGTCTATTCAAGACAGAGTC
TGTAGTCTGAGATCAGATCTCAAGAAAGCAATGGCCAAGAAGAGCAAGGGGCTTGTCCTT
AAAGTCAACACACGTGTCAATGGCGCACAGAGCTCTAATTGCTCACATGGAAAAGGCAAA
GTTGCTGAAATGCCTGAAATATCACCTCAAGATGCATCAGATTGTGATATGGACGATATG
GACATGCCCGATAGTGCTGTCTCAAGCTATGGAGAAGCTAACAATATGGATATTTTTGAG
AGCACGATGAACCTATTGTCAGTTGAAGATCCAGATAAAATCGGTGAACTACACCAGGTA
ACCTACTACAACTCTTTTATTTCACACCATAACAAATCAATTCGTTCACCTATTTGGAGG
AGCTTGAGCTCCAACCTCTACCACCCCTTCAAGAGCCAAAACTCTCCACAACAATGTTTC
TGTTTAACTTCTCCTGTGCCATAGATTCTGCACTATACACTTCAGACAGGTCTGACAAAC
CTTGACATTTCCATGTGGCTAACTATCTAAGTTAGTGAATTAAGTAGGTAAAGGCTAAGA
ATTATAGGTTGTTAACTGAAACATTTTAAACATGGCCACTAATGTGATTTGATGCGTACT
AAATCATAGAGAAGTCCAAAAAGTGGCAATTTTAAAGAACTGTGTATTTGAAGGAGGTCA
GCTCTTTACCATTATCTTGCTTTGCTTACAGACTTCGGAAGATGTGTTGATCGACAACCA
ACCAGCAGAGGGAGGGTATCAAAATTTCGAGGTGATCAATCATCCATGCCAGCGGCTACG
GGTATCAGTCAAGAGGGAACAGGTACCTGTCAAGAGAGAAACCATAGCACATTCTGAGGA
TGAGAGCGTCGCTGCCCCCATGGCGGTCGTTAAGGAAGAAGACACAACCAGGTTGGGCCT
CCAGGGGATCTTGAAGCCCTGCTACACGGGCAAGAGAAAAGGCAGGAAGCCGAAGATTCT
AAGGCGCGGCGGTTCATCATCCGTTCTCAGCTCATGGAAGAGCGCCCGGACTCGAAAGAA
GAGGAAATCATAGACGCAGATCGTCTCAGTGAATGCACCCTTATCCTTTGGCTTCGAATC
TTCCGTTTAATTAGATGATGATGACGACAACTGCGAACCTTTTCCTTTTTTTTTCTTTCT
ACCTGACTGATCGAAGCCAGAAGAGGGTGATGGAAAACGGCACTACGGCAGCGAAGTGCT
TGTAACTCTGTTTTATTTCTGTTGTTGTTGTTGCGTGTGGTCTTTGTCCTGAAAGAGTCA
AACTTTGGTTGTTACAGTGTTATTTTCTGATAAGGATTTCCTGCAATGTTGCTTATTTTC
AGACGGACGTTTGCACGCCAACTCCTTATCTAATGAAAACGTATTTTTTGAAAAAGTTTT
TTTCTATGGAGCTGAAAGTGTATTTTCGTGTGTTTGGAGTCCCTTTGCTCCGCGCCTCTG
CTCCCGAAGCAAATGAAGCTGTAGTTAAAATTCATGTAGTGGTTGTACAGGTGCTATGTA
GATTCTTCAATTTTAAGGAGCTGGTGGATTACCGAACGAGTCCTAAAAGAAGGAAATCAC
TGAGTTTAGACTAACGGGAAAGTTTCATTTTTTTTATTGAAATGGTCAATGGGGCAAAGG
CTCCCAAATGACCTTAATGCCAAGATATTGATCCAGTTTATAAGGAAAACCAGATCGAAA
AGCTAAATAAGTTGACCACATTTATAAAAAAAACCAGGTCGAAAACCGTACAAGAGAAAG
TAAAAGAGGAGAAATGAAAACGAAGAACGCCCAAGACAAGACCCGCCTAGCTAGCAAACC
GAAGGACATCACCGGAAGAGGCATAAGTAGATAAGGGAAGTTGTCGAGAGATCACAATAC
CAAGACTTGACAAGCTGCCTAACGCACCACGCCGACGTGCGTACCGAGCACCATGGCGCA
ACAGAGGAGCATCCAAAACAACAAGTGACTAGCACGAACCTTGACTGGGAACTCCTCCAT
GGGAAATCGGGAACATTTAGCAAGTTGGGAAGGCATCTTGCGGCATCATTGAGCAAAAAT
GAATCGGGACAACACCAAGAGCACGAAGCTCGCCGTACAACAATGGCAGCCATGGAGGTC
TTGAGCATGCACAACAACAGGGGCGACACTGAAGAACACCACCACACATGAATACATACC
ACCGTCGACCCATCCGTCCGCACCACCACCACCAACATCCCCGCAACAATACCCACACGT
CAACCAAGCAGACCCCATGATGATGCCTTCAAGAAGGGTCGCAGTGCAAATATGCCGCCA
TCATCCGCACCAGGAGGACCTAGGCAAGGTGTTTCCCCCGGCGTCTCAACTTCCGTCTTC
ATCTGACCAAGCAAGGAGAGCCTTGAACATTGGTTGTTTGGTTGCCACCCAACAACACCC
CGTACAGGGAAGAGGTGTCATATAGGAACGAGGTGGTCCAGTGAGGAACACCCCCCCGCT
AACCCGACTTCGGATGGAAGAAACCGACCCACTACAAAGAATGGTCGAGCCAAGATGACA
CTGGCAGAGCAACACCTCCTCACCGACACCGAACACAATACCATCGTTTCGGCTGATCCC
TACTCCAAAAATGATGCCCACAAGAGGGAAACGATGCAAGGCCCCGCCGTCATTCGATCC
GAGAGAACACAGATCTAAAGTTTCGCCCAAAGCAAGGGACGACGGGGAAGAGGAGCACAT
CACCACAAGATCACCTTCAAGAAGGCAACGACGCCCACGGACGCCGTCGTTGCTGGCTCC
AACCATAGCCGAAGATGAAGAAAATCACATCCACCTGTAGGATTGAATGTGCCATGAGAT
GCATCTAATTCATGTTTTCTTTCCTGTTTCCAAATTTTGCGAATCATGCGTATCGAATGT
GTTAGTTATATCTCTACACTAGTAGGAGAAAGGCTACCAGTAGCGCTACTTTTACCCTTA
CTAGTAGCGTTGGGGCCAGCGCTACTGCTAACGCGCTACAGCTAACCTGTTAGCTAGCGC
TGGATAAAAAACGCTACTGGTGTCTACGTTATCAGTAGGGCTAGAATAAAGAAAGCGCTA
CTGCTAAGCCAGCGCTACTGCTATTATTACATCGCTAATGCTAATGTTCTTGCTTTCAAT
TTTTAATTCCCATTGTATTTATGCCCCCTCTACGCATTTTTACATGCTCTAAACAACAGT
TTCATCGTATCATAATAAACATNNNNNNNNNNCATCATATCATACACATAAAGTATCATG
TCATGTCATATAACTCATCATCATCTTACGTACTCATGTAACAACTCATCATCATCTTAA
TCATATACCAAGTTAAAATCTCATAAAACAGAAAAACATAATAATAGTCATCATATGCAT
GCATCCTAATAGATCATGCCAAGTTAATATAAATCAGAAAAACTTGCCTCTCATAAGACC
TAGTCCTTGCTCCTAGGTGTAATGTCATAAAACAGAATAACATCTATGTCTCCCTGATGA
ATCACAGAGATCCAACGGTCTTCAACTTGTGGCTTGCGATCCTTATTTATTTCTCTCCAT
GCTTGAATTTGGAGCCTTTTTGATTTGCGGTTACTCGAGTATGGATCATCGAACTCAGCC
CTCAGCAGGCTTCTAATTTTCATATGACCTTCTGGGTGCANNNNNNNNGGCACTACATCA
TTTGGCAGTTGCTGTTGAAGAACATAATAATAACCTAGTTAGCAATGTAATCAGCACCAT
TTATGCAATAGTAGAGCGTACTTAGTTAGGAAACTCTTACCAAGATAGTTTGACGAATGT
CATCCGCCCTCAACCTGTGCACTGGTGGCATGTAAAATGTATAATTTTGGTCAATTCCCA
AATTATACGGGAAGTTATCCCTACAAACGAGGACACCAACAAGAAAGTAGAGAAGACCAT
CCTTCTCCTCCCAAGATAGATGTGATCCGTACGTGTAGTGTG