Contig Data
morexGenes
Links



Map Locations of contig_44197 (5461 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_44197

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_60114 1 263 bp MLOC_60114.1 Available Available None
MLOC_60115 2 1445 bp MLOC_60115.1 Available Available LOC_Os09g31502.1, FRAME:-2, EVALUE:1e-154, 13109.m03157 protein dehydrogenase, putative, expressed





CDS Structure of MLOC_60114






CDS Structure of MLOC_60115






Contig Sequence (5461 bp)

>contig_44197 5461 assembly3_WGSMorex_rbca.fasta
ACCCGCCGCCGCCGGTCACGCACACGTGTCGCGGCGGTTCCATCCTCCTCCTCCTCCTCC
TCCTCCTCTACCTGAGTCAACTCCAACGCACGACGCTACCTTTTGCTCGAATTTTGTCCA
AAACGCACATTGAACGTACAAACATATCTGGTTCAGAGCATAGCCAATCCCAACGGGTCG
ACCCAACTGTCATACATATTTGCGTTGAAACAGATCAAAACAACGGCCCAACGTGTCGCC
CCAACCGGACGAGCGACGTTCGCGCTGCCGTGATGTATCATAGGATAGAGAAACGATAAT
TGTATAGTAACATTGTTTGATGAGACGACATGGTCCGTGCATAAAAAATATGTTGAACAT
TCTGTTAATCTTATGGAATTTTAATGAAATCCATCGTGTTTGCACGTATTTCATCTGATT
AGTTGAAAAAGTAGTTTAATTGTATGTAGACATCGTTGAATGGTCAGCTCCCACATTCGT
GTCACAAACTGATCCCTCTATCCTCTATCTCCAGACAGATACCTAAGCAAATTTGTAGGC
CAATATTAAAGATACCCTTAGTTTATGTCGAAGTTAGGCCCATATTACAGCAAGAGTAAA
ATTGACTACACGGGAAAGAATAAGATATTTGACATGATATTCTAGTAAAAATGGAAAAAC
GATATCTATGAAGTGTTCGGCTAGTTTGGTCACGCACACGCTATAGATGCCTTAAGAGCA
TCTAAAATCATGGTCATCAAATCCAGTCCCCCAAACACTCGTATACATATTTAACCTATA
TGTGATTACATAAAAACCAATCCTTAAATGCATCGGCCACATTCATGTATCTCATATCTA
ATATCCTATATTTATACTAAAACATGCAACGTGAATAAATTTATCGTAGATCATCAAACA
AATACAGAATCGAACATAGAAATGCACATTCCCATCATCAAAAATCACCAACGAATATAC
AAAAGATCGTCAAAGTTCACATAATCCACATTCATGATAAACAAGTTCTAACTAGAGTAC
TAAATAACTGAAAGTTAAGGATGGAGATGGTGAAGATTCACCACTTCCTTGTCGGGCATT
TGCACTTTCAATTACCGCCGCAGTTGTAGGCGTCCACGACAGGTGGTGGATCGTCGGAGT
AGTCGGAGCTAAGAACAAGTCCCTTCACCCGTCGTACGACCCTGTCATCTTGTCGCTTCA
GATTCGCCAGGTCAGCCGCCTCTATTGCTTCCTTTGCCGCCTCGACTGGTGGTAGACCTA
AGCGAGGAGCCACTTGTGTCCACATCGGGCTCCGTCGAAAACGTAGCGGCGGTGCACGGA
TTGCTCTGTCGCGTCCCCCTCCTTGCCCGCTGCCTCTTGCGGCGGGCGGTGGGTGCCTAT
TATTCTAATGTGCATGTGCGGGCCGGCGGAGTGGGCACTAGCACTCATCGCTACTCGCAC
GAAGCAGCGGCTGGCGAGGGAAAAGGATGACATGAGGGAGGAGCGGACAACAGCCCTCAC
GAAGCTGTGTGCGACCCGAGAGGGGCTAGCTCCGCGTCTGCGCTGCGTCGGTGCAAGAGC
GTCGACGGTGTACATCCGAAGCTGCCCCCTTGTCCACCTTGGACGCTCTAGCATGATGCG
AAGTGCCAGCTCCTCCTCGATGTCGGAGCCCGAGTGGCTACCAAAGCTTGACATCTCGTC
ACATTCGATTGAAATCGAAGACGGAAGAGGAGTGGACGGAGCGAGAGAGGAAAGTGGAGT
GAGCTAGGGATCGAAAAGGGAACAGATTAGGGTTTTTTGTGAGGATGGCGTGAGGTCGGT
GGCGGGCCAAGCTGACGTGACGGATGCGTCCGGGTCACCTTACATTTGGGACGTTTGAGG
CGTTCAAGTAGATCTTTTTTTTATTTACCAGTCAATGGCCGCTCCGGCTATCCCGACAAT
TGAGACTGGTTTGCTATATGTGCGCGGTATCACGCATCCTACGTTGCAGACTACCTCGGC
AGTGACGAGTGATGATGAGACCTCGACACAACATAGCAGAAAATAGGGAGATACAATCCT
GAACCGAAAAGTTATCTACGGTGGGCAATGAACAGGTTCACTCTCTGGTCTCCTATCATC
TGCCCTTGAGATTGAAAACATTCAGCAAGTCGCAAGCACAATGACCTATGTAGAAAGCAC
CGGCCACTGCCACCCTCCACTCATTAGTCGGCAGCTTGAAAATGGCGGAAAATATCAGGA
AGGCGGTAGGTCTGTCCCTCCACATCCTGCAGAATTCCTGTCTTCCGGTAGTATTCGATG
CTGTCCAGGAGCGTCTCCTCCAATGCCCTCGGCTTCCAGCCCAGATTACTCAATTTTGCC
GACGAAATCGGCGTGACAGGAGAGTTGTGATGCGCATCGGCCTTGCTGCAGAAAGCAGAG
TGAGAGAGTTATTCAAACCATATAAACAAGCAAGCACGGGCGTTCAGGGAAAATGTGTCA
TTTGGTACATTCAAGGAACACATGATAAGAGAATAGACCCACCATTTTACGTAGTTGTAG
TCAGGGTATGTCTTCTTTAGCAGCTCCAGCAAAGCCTTTGTGCTAATGTGATTTGGTGCA
CAGATATATCTCCCGGATGATTCTGATGTCTCATATATCAGCAGCAAAGCATCGGCCACA
TCACGGACATCGACTATTTGCAACGGTGCGTCATTCAACGCATTAGGACCTCCTGTAATA
AAATTTTCAGCACTCGCAGCCGTCAACAATATATAACAAGTAGATATGTACCATGCAATT
AAAAGGATGAGGTAAAAAAAATTGTGCACAAACAGAAGAAGCAATACAAGACATTATTAA
GAGTCATAACCATAGTTTTAAATAGCCCGCTATAGCCTTTTCAGCAGGGTGCCGCTAAAT
GGTATCATGTACAAATATGCCGCTATAGCTCCGCTATAGCTGATTTAGAGGCTCGCCGCT
ATTTGCCGTAGCCCGCTATTTAAAACATTGGTCATAACATCAGTCCAATCATATTTCAGA
ACCTTCTTCAACAACACAAATGAGTTGAGTAGTTCTTACATAATGCCTGAATTGGAAATT
GAGGGCATTCTGGAGCACAAAATTCTAAAATGGAAATGCCAAAAGAAGTTTGTATGTTGT
GGCTTCTCGAATCATGAAGCAATATAGGGAATTTCTATAGGAATTTTACAGGAACTCAAG
AAGAGAGAAGGTCGAGGGGAATTTTTCCATAAGGTCTAAGCTCATGGAAAAATTGGATTC
AGTTATTCTATAGAACGTCCGGAAAAATCTATAACAAATTCCTAGTTTCCTACATTACCA
AGAGAGCCTTGCAAGTGATTAGTGCATTTTTCCCACCCAAAGACATGAACTTTTTTGTGA
GGTAAATGATAATCCTAGGGCAAAATAAATAAATGAAATAACGAGGCACCTTTTATGACA
TAGATGAGGAGTTCACTGGTGGTGTTGACAACAGGTTGCAATTGTGGCCCAAAAACAATA
CAAGGACATAAAGTAACTACATTGAGCTCATTCTTCTCTGCATACTCCCAAGCTGTCTCT
TCAGCAACAGTTTTAGCAAGAGTATACCAGGCCTGCCAACAGATATTGTAAAGGTTTGAA
CTCAGTCATCACATGTTGCAACCTGTTAATGATGAAGTGAACTACTAATATGTTAGGAGT
CAACAAAGAAATTCGACATGTTAAATCTTCATGCAAATAAACTGAAGTATACGCTTAGCT
TCCGCAAGTACGTTGCGACTGAATTCCATTGTTCTGTCACCTCACAGTTCTAATATCTAA
CTTTACTAACCTCCTTCTCCATGCATATTTTTCTGTCGGACCAGCAACTCTCGTCTTTGG
GTTTACCCTGAGGCCAGTTGGGGTTAGAATGAACAGCAGCAGTGGACGACACCACCACAA
CCTTCTGAACCTTCAGAGATGAACAAACTTCAAGAATATTTAAGGTGCCCTTCACGGCAG
GCACCATGATTTCTGACTGCAGGGTTATATTTAGCACAACATCAGTAACAGACCATCAAG
AATCTGCATTTTCAAATATTGAGATTTCAACGAGATTCTACAATGCTAGTAAGGCGGTAA
CAACATCCGCGAAAAGAAAAAAGGTAAGGCAGTAGCAACAAGTAATCGTCTCAACAGCAG
CGAGTCAACAAAATCCACTCTTTGTTGAAAGAAACAGCAGTGACTACACTAGCAAGTAGA
AAGGGAGCACTACTCATTCGTTCCAACATCCAAATACTGATCTAAGCTTCTGCTGTACTA
GACAACTGTTGCATATAGTTACATTGATACCCACAGCAGTGTTAGATTTGCATCCACAAC
TGATAGAAGAATAGCAAGCCAAAATCCAATGGCAAAAAAATTCTGACGGTACTGCTTCTT
TGACAAAGACTGGACGGTGGAACGAAGTATATATACTGAATCATGGGAGTTGTTCAATTT
TGTGGAGCGAGTGAATGGACAGATGTGTACTAGCCTCAGGGTCGACGGTCTTATCCGCGG
GAACAGGGGAGGCGACATGGAAGACGCCTTGGCAACCGGCGGCGGCGGCGGCGAGCGCGG
CGCGGTCGAGCACGTCGGCCTTGAACAAGCTCAGGCTCTCCGCCGCCCCGTCCAGCTGCA
TCAGATGCGCGTTCTTCTGGTCACCTGAAACGGCATCCTGACATTAGTTACCAACCGGCG
AAGCAGGCAGCAAGAAGAGAGGAGGAGCGGCGCGGCCGGATCAGACGCGGCGTACGTACA
TGGGTCGCGGACGGTGGCGTGGACGGCGTAGCCCCGGGAGAGGAGCAGCTTGACGAGCCA
CGATGCGATGAATCCGCCGCCACCGGTCACGCACACCCGCGGCGACGGCGACGGTGGTGC
CATCCTCCTCCTGTCCTCCAACCCACCCTCACTTGCGGCCTTACGGGATGGCTCGCAGCT
TGCCCGGCTATAACAATTTCTCCACCCACTCGCCGGTAGACTGTCATGTCCACAGCCTGT
TTGGTTGGGGCGATTTGTGGGGAGGATTGAAGACCCCCAAAGGTCCCGGATTTTATCATG
TCAAATCGATCGTTTTTCGATGGTAATTTTAATGACACGGGGTGCCAATTTTTTTTGAAA
AGCATGCAAATCCTTGCGCAGTGTAGTCATCAAATTTGGACAAGGGAAGTAGACTAAGGC
CCAGTTCTTTTGCGAGAATCTTAAAGCCTCATTTATTTTACAAATCTATCTAGTTAGGGT
CTAATTAGTTAGTATTGTAAAATAAATGGGGGTCAAAGATTCTGGGAGAAGCTGGGGAGG
GGTCGGATTCTAAAAAAATCCCTAGATTCTGGCAAAAGAACTTGGCCTAAGGCATGAACA
AGGCGGATCTAAAGGGGAAAAAAACAAATACATTGTGAGGACAGTGATGACCGAACTCTT
CAAAAGCTCCCTGAAAAGACGTGGATGTCGCCTAGAGGGGCGGTGAATAGGCGCTTTAAA
A