Contig Data
morexGenes
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Map Locations of contig_44166 (4643 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_44166

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_60071 1 261 bp MLOC_60071.1 Available Available None
MLOC_60070 1 284 bp MLOC_60070.1 Available Available LOC_Os12g30780.1, FRAME:+3, EVALUE:1e-14, 13112.m03136 protein retrotransposon protein, putative, unclassified
MLOC_60072 2 1211 bp AK372047 Available Available None





CDS Structure of MLOC_60071






CDS Structure of MLOC_60070






CDS Structure of MLOC_60072






Contig Sequence (4643 bp)

>contig_44166 4643 assembly3_WGSMorex_rbca.fasta
GGGGGGTGGGGGGGGGCGGCGGCGGTCCGCCCGGCCGTGCCTCGCCTCGTCCCTCCGGGA
CTTCTGGGGCCGCCGGTGGAACCTCATGGTCCCCGGGGCGCTCCGGCCGAGCGTGTACCG
CCCCGTGCGCGCCCGCGTCGGCGACTCCGCCGGCGTGCTCGCCACGTTCCTCGTGTCGGG
TCTGATGCACGAGGTGATGTTCTACTACATCACGCTCGAGGTCGGCACGGGGGAGGTGAC
CGCGTTCTTCGTCCTCCACGGCGCGTGCGTGGTGGCCGAGCGGCGGTGGGTGCGGCGGGG
CGGCGCATGGCGGCCGCCGCGCGCGGCCGCGACGGCGGCAACGCTGGCATTCGTGACGGG
GACCGCGTCCTGGCTCTTCTTCGCGCCCGTGATTCGGAGCGGGCTGGACAAGGCCATCGT
CGCCGAGTGCGAGGGGATGCTGGCCTTGTTGGAGGCGGCTGTGCGGAGGCTGGCTGCAAG
CCTGCTTTGGAGCTGACGGTGTAAGGGCACCTCGCGAGGAACATGGCGGCAACCAAGGGA
ACAATCACGTCGCGGTCCGTTAACTACGGCCAGTTTCCACGGATGGCCATATTAGAATCT
CATCTCGCGGCAGTACGCGGATGCATTTTTGGTCATTTTTTTGTTTCTCGACGTATGTTT
CGAATTTTGATCTGAATTTTTTAAGGGTTATCTTAATATGTGTTGTGAACATGCATGATT
TTTTTCAGATTTTTTCGCAATGTTTAAATTTGAATTTAGGCCGCAAGATACACGGTGACA
TGCTGTTTGAGATTGTCACGTAGAGTAGTACTCCCTCCGTTCCTAANTATAAGTCTTTGT
AGAGATTTCACTGGTGGACTACATACGGATGTACATATTTTAAAGTGTACATTTAATTAT
TTTGTTCTGTATGTAGACATCTAGTGAAATCGNNNNNNNNNNNTATATTTAGGAACGAAG
GGAATAGTTGCTGTGGTGTAAGAAACACACACACTTGTATGGAAGATCACTTCATACAGT
GTATATGCCTGGAACCCCAGGCTTGAGGGTCGTGATGTAAGTGTAACCAGATATTATTGC
TATTTGGATATCAAAAATGAAGGTTTGCACGAAATCCATAGGCATCATTAAAAAAACTGC
CTGAAATGGGACTAAAACTCGATAGATGAAGGATCACTCCCTCCTCCGTCCCATGTTTGA
GGGAAAGATGGGTTGTATACATGTGCCTGCACGCCTTTCAGCTAAACAAAGCAACAGCAT
ATCTAAGATGCTAGACATGGTCAGCAGCTCTGATGGTTCATCTTCCTCCTACTTATGCTT
TCGGGGAAGTTCAAAATTCACAACTTCTTTAACCCGAGGACGGGTATTTAACATGAGATG
CAGCCATTGGAGATATATGACGTAAAAAGAAGTTGCCGAATGGATGTGCCACTGCTAGCT
GATGTTGTCTCTTGCATCCTTATGCTGGTAGGTAAGATTCTAACATGATTTGTGCGGGTC
GCGGTGACGTAATCTCGACGAGAAGAAACGTGAACTTCCATGTCCTGTCGGCGTTATCTT
TGAACATCTCTGCAAACACCTTTCCAGCTCCATGTGGCCCCCGGATATGAAAGGCAACCT
GAAATGATGCATGTGAATTGCAACTGATCAACCAGCTTCAAAGACTTCCCAACACAACAA
TGTAAGCTAGTACTACATGAATTCATATCAATCCCATCCCACTGCCCCTTGCACAAGTAC
AACATCTGAAAGCATATAAACTGGCAATGGTCCACTACATATTAAACTCTCTTCACTAGT
AAGAATTATAGACTTGTTTTAGTAAAAAAAAAAACATGTTTGCTCTCATCTCTGTTTCTC
TCCCCCTATGTTGTCATTTGGAAGCTTGCTCCTGGCCAAGGGAAGTCATTGACTCATTGC
CATATGCTGCCAGCGAACTGTCAGAGGATAAGTGTCACCCTAACTGTTGCAGCCCCTCAC
AGTAAACTTGTCCATTTTCATTGACTTAGCTACCATTATCTTGATGTGCAAGTAAGCTGC
ATAATTAAAGAACGCACGGCTGTAGAGACTAGAGACAGGAATTTATGCTACCTCCACATG
TTCAACACCATCCTCATCTGTCCAAACCCTGTTTTGGATGCGCTGCCGAGCTGCACGGTT
TCTGGATTCCGTACCATAACCAGTTATAGGGTAACCAATTTTGGCTGTAACCTGACAAAC
ATACGATAGACGAAGTATACTAAGAGAGGAACAACAAATATGCCAGGGAAAAATAGAAAT
AACGCGAACAGGCACAAACCTGACTATCACTCTGAACTCTTGCTAGAGCTTTCCCAAAAA
TCTTGTACCTGTACAATGGTAGCAACATTAGTAATTTCCCATTCGCATTGCAAGGGAGTA
CCACAGGCATTCTCCAGAAAACAATTTGGTGTAAACTACAGAGGCATGCTTAGGCATAAA
GCAACAACAGTAACCCTGGGATACAAAGAAAAAATGAGGCGATAAAAAAATACAAAACTT
CTTACTCCCTCAGTTTCAGGATACAAGGTGCAACAATTTTGTGAAATTCAAACACCTAGA
CTATACAAATATATATTTAAGGATGGATCTACTGATACAAATTTGGTATTGTAGATATTG
ACACCTTTTTCTATAAACTTGGTCAAACATGCACAAATTTGACTTTGGACAATATATTCT
GAAACGGATGGAGTGTCAGATACACAAAATAATACTCCCTCCATCCCATAATAAGTGTCT
TTGATTTAGTACAACTTTGTACTAAAGTTGTACCAAATCAGAAACTTATTTTAGGACGGA
GGAAGTAAATCAGGCAGGATTATCAAGTATGCGACTGACTGACAACCTGCTAAATAAAAT
CTCCACCACCAAGTTATTTACTGGTCAGCTTCAGGGAGAAGCTGAGTACCAGCCTACCAG
GCATAGGTGGCAGGAGCACACCAGGCATAGGTGGCAGGAGCACACCAGGTTAATAAGTAC
GCCAAGATATGCCAATCACCACCTGCTGCTCTCTTGCCCCTTTGCGCGGCAGGCCTGGCA
CGAGACACTATCCTGGCTGCATCTTCCGGCCCCGTTGCCGGAGCATGATGCCTCCATCCA
GGACTGGTGGAGGAGGGCGAGGGATGCCACTCCATCATCGCTCCACAAGGCACTGAGATC
TGCCGCGCTGCTGGTGCCCTGGATGATATGGAAACATAGGAATGCGTGTGTCTTCGACCA
TATTCCTCCGTCGCTCGACGAGCTCTTGGATAGGATCAAAGATGAGATTAGGTGCTGGAC
TAGAGCCGGGGACAAAGGGCTTAGGGTAGTCTTGCCCCCATCCTGGGATGTCCACTAAAC
CACCATGTAACAATGCTGTAACCACCTCTTAGGAGGCTGTAAACTCCCTTCTTTTCAATA
CAAAGAAACACAAGGCTCTTTGCGTTTTCTCGAAAAAAAAAGATATGCCAATCACAAAGT
TGGTTACGAAAGAACGCCTGCGACGAGGGGTGGCACATAGTACAAACCAATGGAAGAAAT
AGCTTACATGTGTCGGCAATAAATATACTAAGAGGAAGCCAGTGATGGGGACTCCAAATT
TTGGCAGTAAACATGCCCATATGGCCATATGAATTATCATGTTTCTTACTAATTGTGCTA
TTTGGTGTCTTGAGTTTAATCAGAAAAATACAAAAGACATACTCTTTTGGTTCAAATATA
AGCTCTTTGAGAACAGCATATCCAGCCAATGCAGCAACTCCAAGCCCAGCAAGTATTACA
ACACTGTAAGAGGCCCCCTCGACAAATGTCACTGGCTTCTCAGGTATATTGTAGGTAGGG
GCATTAAAGGGATCTTCAACAGTCGTCAAGTCTGTTCTCTCCTGAGGATAAAGGTCACAG
TCTTCTATAAGCAATAAAGAAATGACCCAGTGTGGCATGCACCATAAGAAAAATATGTTC
ACGAAATAGGAAAGGAAACAACTAACAGAACCATATAAAGTTTACTTTAAATTTAAGTGT
AGATGAAGATATGCACGAATAATGGGCCTCAAATACTGAAAATGCAACGTGTTAGGTGAT
TAATATTGTTGAGGGGAGAGTAAATACACAATACTCGGTCCTTCAGCGGCAAACTGTTGT
CAACGAATAAACAAAGAGAATAGACAAGATTATAGACTTTCAGATAAACTATACTCTATA
ACTAACATAATTAGTTTGCCCTATTAGATCAATAATTCATGCCTTAGCAAGAAATCTGGT
GTAGGAAAAATGAGGAGCTTGTTATCTGATATCACAACATCAAGATGCTTTATCCAAAAA
ATGATTTAAGCACCTAGCAATTACCTATACTGATATGAACAATTAAACAGAACCTTTTCA
GTATATGCAACACCATTCTATTTTCATAGCATTTGAGCAACTCCTAACAATCTATTCTAC
AAAAATAGTACAAAACCACATTATAAGTGCTAATGCATATGCATTGAAGCTGGTCATAGT
GGGAGTAACTTAGCTAGTAACATAACGTTTCTCAAGGCAAATTTGCTTATGTGGCATGTA
GTTAATAAGGAGAGAGGTGTTTGTGGTAACATAAGGCTGCTTCCAATGCAAAGGTGCTAA
GATGTGGTGCTAAGAACATTAAA