morexGenes - Barley RNA-seq Database

Contig contig_44090
Source Contig contig_44090
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_44090 (8835 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_44090

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_59989	1	1403 bp	MLOC_59989.1	Available	Available	LOC_Os04g47500.1, FRAME:-1, EVALUE:2e-52, 13104.m04814 protein transposon protein, putative, Pong sub-class
MLOC_59988	1	1804 bp	AK366151	Available	Available	None
CDS Structure of MLOC_59989

CDS Structure of MLOC_59988

Contig Sequence (8835 bp)

>contig_44090 8835 assembly3_WGSMorex_rbca.fasta
TATGTTACTTGCTTGCGAAACGCTTAAATGCGCTTCTTTCCTATTCGGGGNNNNNNNNNN
NNNNNNNNNNNGGACCGCATCTTGGTCGTTACAGGCTTAAACATGATAAGCTCTCTGGCG
CTGCCCTGCTACTAGCAAAACAGAGCAAAAAGGAAAAAGGGCGCCGGGGAGGAATCAAAC
CCCCGACCTGATGGATATGCCACGGTTCGTTTCCACTTTGCTAGGTGATCGGTTCTGACC
GGAGAGGGGGTGGTACTCTCTTGAGCAGCCCCTCTGATCTACCGCACACACACACAAGAC
GCCGACACAGGGAGTCTACTCTGGCTAAACTCCGGTGATCTACGCGGACGGCGGCTACGC
GCGGGATACATGGGAAGGGAAGGAGACGCAGGCTCACACTGTGGCGCGAAGACGGCGACG
AAGCGGCTGCTCGAGGAGGAGGAAGAAGAAACAAGGCGCTGCTGCAGGGGCTTGGGTGCT
CCGGGTGCTCGATGGAGACGAGGTCGAGGCCGTCGCTGTGGACGCGCTCCGGCCTCACCA
GTGACGGGAATGGAACGCCGACATCTCCGGGGCGTCGCGGACACTCTTGCCCGAGTGGGA
GGAGACGACGTTGACGAGGACGACGGTGACGAGGGTGGAGCACCTCCTGCTCCCTCTCTC
TGAATCTCACCTCTCTCTGTGAACTATCTACAGAGAAGAACAGTGGAAGGGGAAAGTGGC
GGCGACGAAGGAGGGGGAAAGAGGAACCCTAGGAAGAGGACGGCTCGGCTGAAGAGGTTA
AGTAGGGGCCCCTCGACGTCCGTGAACCTCACGACGTCGACGTGGACGATCCCTCTCTCT
CTCGCGCGCGTCCCTCTGCTGACGGAAAGCAGAAAAGAAACGATGCTGACGAGGAGGAAG
AAGGAAAGGAAGCTGGGCCAAGCACTGGCGAAGGAAGGAAAGAAAGGGGGCGAGGCCCAA
GTGGAGGAGGAGATCAGCCGGCCCACCTGGCTCCTCTGTAGCCGACCAAAATCAGAAAAG
AAAAAGGGTTTTCTTTTGAAAAAATAAACATCACCGAAAATCAAAATACCTAGAGCAAAC
AGGGTTTTGAAAAATAAAATTAACAACACCTGGGGCATGAGGGAATTATGCCCTATTTAA
ATAAAATGCAAACCTGAATTTTTAGACAACTAAATTATAATCATAACGGGGTTTTAATAT
GCTGTTTTAAAATAAATGCCACCTCTCCAAAGTAAGATTTTAACCATGAGGGCTACCCCT
CAATCACAAACAATATCCTATAATTAACTAACATTTTTAAAACAGGTTTACTCAAAGTTA
TTTCATAGGTTCATTTATTAAAGGAGAAAGGGTTTTGAAACCTTGATTGAAAACACCATA
TTTTGAAAAACCCCATAACATCAACACAAACACCTAGCACTCATAATCACATAGCACTCA
TGATAGATCAAGCAACAACAACACAATGGATGCCATGATGCAAGAAGGAGGCAAAATATA
ACATCCACATGGAATGATAACTCTTATGGCATTGAGAACAAGGTTCCAAAATAGGAAAGG
ATCCCAAAATGGCAAGGATTACATCTGGGGCATTACAGCTTCCTCCTTCAGCAGCGCCGC
GAACGCTTCCTCGTCATCGCAGTCCATCGCCAAGACAAAACACCGAACACCAGGCGGGTG
TGGCAGACACGCAACCGTTTGCGTGTCTGGAGCGACGGAAAAGCTCGCCCAAAAACCGAG
GGCGAAGTCGCGGCGAACCCTCCCTTTCTCGGCGGGGAGATGGCCTTTCTAGCGGCGGTA
GGCACGTGGGCGACGCCAGGATCGACATAGTGGGGAAAGGTGTGTTTCACGTGTGGGGTG
GGGGGAGAATTTGGAGGTGGGAAAACGTTTTTCACCTGACAGTGCCTACCCACATGCCGT
TTTCCATTCCGCTGGAGCCCCCAAGCGCACTAGGTTCGGCCTGGGATCGACGGGCCTAAA
AATGAACCCAACCGGTGAAAATCGACATCCTGAGGGCGTGACTGGGAGGATTTTTCGGCG
TCAACGAAAAAAACACGTCCGAGGCGTGACTGGAGATGCTCTTAACGGATGTGCAATTGT
AGTTACTTTGTTGGAGCACAACTGGTTGAGCATTAGAAAAGCCATTTTTTGAACAATTGA
CGCTCTTTATATTTAGCAAAAAAAGTAAATTAAAGAGAGAATTGTTAGGGAACCACAATG
AACTGCTCCACTACTTTTCTTTTTGGGCAAAACCACCCTCACTAATTAAATCATTAATTT
TCAGTTTAAAAGGCATTAATTTTCAAATCCAATCCGGATCATGTGGGCCTTTAAGCTGAC
GGACATGCACGGCCCAATTCGATCCACACACCAGCAACCCGCCGTGTCGGGCGCGTAGTC
AGAGCGGCAGACAAAACAACTCCCGCGAAAGGCGAACCCAATACCACCACAGCAACCATC
GTGACCGTCCACTTCCACCCGCCGACGAGATCCAACGGCCGCCGCGCGCGGACACGCTCC
AGCACTAACGCGTCAACCTCCGAAACGAATCCCCACCTTCTTTACCCTTTCTTCCCCTGC
AAACAAACGCAATCGCGAAGCATCGAATCGGATCAGAGTTCGGGAAAAAAAAGCGAGAGG
AAATCGCCGTCGCCTCTTGCGTTCCACCTCGCCGGCGATGCAGCACGGGAGCGGCGACTA
CGCCTCCCCCGCCCCCGCGGGCCACTACTACCCTCACCAGTACACGTCGCCGGGGCCGAC
CCCTCACCCCATCGCCGCCGACCCCCCGATCCCGGGGGGCTACGCCTCCGCGCCGCCCTA
CTCCGTCGGCGGCTACCCCGAGCAGCCGCCATCTGCCCCGTCCTACACGCAGCCGCCCCA
GTACGCCGGGTACCCGCCCTACAACCCCACGCCCTACCCCCCGGAGCCCACGCCGGCGCC
GTACTACAGCTACTCGCAGCCCACCCAGCCGGCTCCCGCAGCGGAACCCAGCCCAGCGCC
GCTTCCCTATGACGCCCCGTACTACGGTGGAGGCTACCAGCAGCCTGCCGCTCGGTATGG
CGACGACGATTACCTGAACGAGGGCGCGTATGCCTATACCGGCGACGCAGGCCCCGAGCC
GTACGGCGCGCGCGGCACGGCGCCGACCCGGTCAGGAGCCGCGATGTTTGATGACTACGG
CCGGTCGATTGGACTCTCGTCCGGAGGGGTGGAGCAGCCACACGGCGGCGAGGGCGGCAG
TGTGGGTGGGAGCTTTGGGAAGATTGCGAGGGCTGTTCCAAAAGCAGAAACCCATGAGGA
TGCTAGTGGTGGTGCGCAGAAGTTTCGGGTTAAGCTGCTGCCAGAGGGTGCCGGAAGCCC
CACCGATGTGCTTTGCCAGGTACAACTTCAGTAACGATAAGCTATCAGTTTACACATGTT
AGGTGTATTGTTTCACTCCGAAATTATGATATCGTGCTGTGGTTTTGCAACATATATGTT
ACTTGTTCCAACTTCCATATTGATCACAAGGACTGTTATGATACATGAAATCTGTACTTA
TTAATTATTATATGCTATTGCAGGTTGGTCTGGATGGAATCCGCATGCTTGATCCCAGCA
CAAGCAGGACCCTAAGGATTTATCCCCTTGATACACTGACTAAATGGGAGGTGTGTTGGA
CAGCATTTTTGCAGAAGATTATGGTTATATTTTCTCATCAGTGATATGATACACAGCAGT
GAGGGTATTCTAATGGTTGACACTCCGCTTATTTAGGTTTTGGATTCAACTGTATTTGCG
ATTTGGGCAAAGACTTCAGTAGATTTTGAAGCAAAGAGAATAAGGCTGAAGTCAAACAGC
TATACTTCCAATACTTTGCTTGACACTGTGACAGCAGCAACAGTCCAGGTATTACACCAC
CACCATTCTCTTCTCACTATCCGTGAGTAGCCACCTAACTATATTGAAAACAGTGGAAAT
CCTTCTTCTCAATGCTCTAATGTCAGTATATTTTAGTTCCGTTTCTTTGGCAGTGTTGCT
GTTTCATATTTCAACTACATCTGTAATAACTATCAGTACAAATGGTTTACTCTAGTTATC
TATCCATGCTATGGTTTGCTTTGGTACTTCTGGTTCAGTTTACATGTTATTCTAACTCCA
TACTTGTGGAAATAAGGAGCTAATGTCTTAATTTTTTGCATGGTTTACCCATGTATGCTG
ATCAGTCAATACTACTATCGATAAACCATCGATAGGGTTATTTGGTGAGAACTGTTCAGT
ACTGAAATGACATATATTTTGGACCGAAGATAGGTATTAAAAAATGAAATATTTTTTTCA
TGAATATTTCGCCTTCTATAGTATGACCAGACGAGTAAAATCTCGTGCCAATTTTTTGGT
TGTGTGCTAACATGTTTTTATCTGTTCTGTTACACTTGTGTTTGAATTGCTCCTATCTTG
CTGATTCTATTTTAGCCATATTTTTATTTACATGGATTTTTATGTTAATACTCGATATTC
GTGTTGCCCAGATTGGTTACTAGCTTGGAACTACTTACTTGACACTGTTTTCGATTCTAC
ATGATACATTAAGAATTTCTTCCTTAGATAAGCCTTGTTTACTTTTGTGATTGTATAACA
TAGTTTAAGGAGATCGGTGAAGATGCAAGAGCCAAAGGAACTGTAGACGCTGGCAAATCC
TCATTACAATCAAATGAGAAGAAAAAAGGTTTTGATTGGATGTTTGCGAAACCTGTTGAT
GAAGTGAAAGATCATTGGGTAAGATGAAGATGCTCAATACCCATTTACTTACATGGTAGT
CACATGATTGTTTGAAACACATCATTTTACTTATTTCTTTAGAACTGTTTAGGAGCATTT
CTTGTCATCCATGACCCCTTAAACTCTTAACCCTTTAAAGTAGTTAATTCAAGCGGGACC
TCCATCTCTTAATAATCTTATGAATTATTTTCTTCTCGCATTCTTGCATCAAAGGTTATA
CTTAATGTGTACTGTTACTGTCTCTCCACTTTCAGGTTCCAGATGAGGCTGCTAAGAAAT
GCCAGTCTTGTGCTGGTGATTTCAGTCATTTCAACCGCAGGGTAATTTATATAGTAGCTT
TGTTCAGCTATTCATGTTATCACCAGAACAATGAATTTATAAATTATTGATATGAGTTTG
TTATTCTTTGTTCCAGCATCATTGTAGGAACTGTGGCGAGATCTTCTGTGATAAATGCAG
CCAAGGAAGAATTGCTCTGACAGCTGAAGATAATGCTCCACTTGTCCGAGTGTGCGATAG
ATGCATGGTATGGTCTGCTACTGTGTAGACTTAGTTTAATGTTTGGTTGTATTCACTTTC
TAGTTCTCTGCTTACTTCCAAATATTGTTGACAATAATTACCTTACTAAAAGAAAGGTGT
CCAATTCGTACTGCCACCCTCCCTCCCGCTTGCCAAGTGGAAAAAAATTTACGTCGCCAT
GTTTGTTACAGCTCTTCAGCCTTTGTTGGGTTGCTTAGTATGTCTCCCGAAGCATGTCTT
TGACTTTGCTGTAATTTTTTTTTTGTCATCATTCAGTTTTGTTAAAGCTCTTTGTTGTGT
TTCTTATTGGTGGTGTTTTCCCTACTCACTGGCTCAGATCCTTTGCATTTGTTTGTCTTC
AATTATTATTACCAATGTAGCGACTGTATTATGGGAAGCATTTCGCTGCACTAAACTATT
CCAGCTTTCGATAGTTGTGTGTGAAAATATGCTTGGCATGTAAAGAGATGCTGCCATGTT
CTCATAATAATTCTTATCTTCCACAGGCAGAGGTTTCTCAGAGGCTTAGTATGGCACAGG
AAGCTGCCAACAGATCTACCACAGTGCAAAGTCATGGAGATCTTGCAAGAAAACTGAAGG
TAATATGCTAGATGACCCTTCCTCTATGCGATACACCCATATAAGTGACAGAAATGAACT
TGGATGCCAATGGAAAAGGAATATTGCCATAGTTTTGGCTACAAACTAGATATACAAGCC
AATTCTGCCGAATACGACCAAATTTGAGAACGAACTTGTGCTAAAAGGAGTCCCCTAGCC
GTACTTCGATTTCTTTCCTTTTTCGTTTTGATCTAAAAAATGCGAAGGTTAAGGAAGATA
GCTGAGCCTAGTAGGATCCGCTTAGGTAGCTGGAATGTAGGGTATACATGAGTGAGGAGA
GGTGTTGATATCCTATGTGTCCAAGAAACCAAATGGCAGGCACATAAGGCGAACGAGTTG
GAGGATTCTGGCTTCAAGCTGTGGTACACCGGGACAACTACAAACAGAATGGAGTAGGCA
TTTTGATCAACAAGAGCCTCGAGTATGGAGTGGTAGACGTCAAGAGGCAAGGAGACCGGA
TTCAAGCTGGTCGATGGGGACTTAGTTCTCAATGTTATCAGCGTGTATGCCCCACAAGTA
GGCCACAATGAGAGCACCGAGAGGGAGTTATAGGAACACTTGGAGGACATGGTTAGGAGT
GTACCCATTGGTGAGAAGCTCTTCATAGGAGACCTCAATGGCCGTGTGGGTACATGTAAC
ACATGTTTTGAAGGGGTGCATGTGGCCTTTGGTTATGGCAGCAGGAATGAAGATTGGGAG
GATGTCTTAAGCTTCGCTTTAGCCTACGACATGATGGTAGCTAACATCTTCTTCAGAAAG
AGAGAATCCCATCTATTGACTTTCAGTGGTGGTCAACACTCTAGCTGGTTGATTTGGTCC
TCTCGAGAAGAGAAGACAAGCATGCTTGCCTAGATTGTAAGGTGATACATGGAGAGTATG
TTGTCCCTCAACATAAGCTTGTGTTGGCTGACTTTCGCTTTTGAATTTGTGTCCAGCGTA
TAAGCGGGCCAAAGTCGCTAGAACGAAGTGATGGAAGCTCAAGGGGGAAGCATCTCAGGC
TTTCAAGGAGAGGGCTATTGAGGAGGGCTCTTGGGAGGAAGGAGGTGATGTAAACAATAT
GTGGATTAAGGTGGCAACTTGCATTTGGAAGTTGGCTTCAGAGGAGTTTGGGGTGACCAA
GAAAGGTAGAAGTGGAGCTAAAGATACCCGGCAGCGGAATAATGATATCTAGAAGGCTAA
GGCCTCCTTTGTTTTATAGGGATTTTGTAGGAACTCTAAAGGATAGGAATTTTGTAGGAA
AAATTCCTTTGAAGCCCTTTGGTTTGCAGGAACTGATTCCTATTCCTATGAAAGATAAGA
ACCAATCTTTCACATTTCAAAGGAATTTTTTTTAGCCTAGATCCAATGGAAAAATCTTGT
CATATGCAAAGTTGTCAAAATCGCGACTCAAGCCTTAGAATCTTACGACTTTACGATCCA
ANNTAACCCCTCCGATTCTATGATTTTGCTCAAAGAATCTAAGATTCTACGATCCTGGTA
GTTATGATTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATCGCGA
TTCTGACAACCTTGGTCATATGAGTCAAATGACATCCCTTTCCCTATAGGAAATGAGTTA
CATGTCATCTCACTTCCTATGGTTATCTTATTCCCATGGTATTCCTATCCTATGAACCAA
AGGAGGCCTAAGAGCATCTCCAACAGCCGTGCAACCGCCGCGCGTGCTAAAAACATGTTG
GAGCGCTGAAATAGCGACTTTTAGGCGCCGGAGAGCGCTGGCTCCAGCGGCGGCCGCCAA
AAATTGCGCGCACGAGCCGCTCCAACAGGCGCTGCAAAAAAACGGCGCACACGTCCAACA
CAAACAACATATGACACTCCAAACAAAACCAATTAAAATCAAACACATAAAAAATAATCG
ACAATAAATAGTTTAATTTTTGACAAATAGTTTATCTTCCAATACAATAAATAGTTCAAC
ACAAGAACATCAAACGTACAACATCAAACATACAAATCATCATTCATTTTGTCGGCCATT
CCATGTCCACCACTCCTCGATTAGATCCTTCTGAAGATCATTATGCGTTTGGGCACGTCG
AATGGCATGATATGAGGCAACAAATCGGGCCACCCTCACAGTCTAAATCTTGGCCATGCT
CATTCTGGATGATCATGTTATGCATTATCACACAAGCGTGCATGATGTACCAAAGGATCT
TTTGATCCTAAAATCTAGCCGGTCCTCTCACAANNNNAAATTGGGCTTGCAAAATCCCAA
AAGCTCTCTCCACATCTTACCGAGCCGCCGCCTGAGCATTGTGGAAATCTAGATTTTCCT
TACCTTTCGTTTTTTTCAACAGCTTACACAAATGTTTGCCACTTTGGGTAGATGCCATCC
GCAAGATGGTAGCCATAGTTGTATGTATGGCCATTTGCTACAGACTCCATCGGTGGCAGT
TCACCATTTGCAATCTTATTCATGAGTGGTGACCGATTAATAACGTTGACGTCATTCAAA
GATCCAGGAATTCCGAAAAAAGCATGCCAAATCCAAGTCTCTTGATCGGCCACCGCTTCA
AGGATTATAGTGGAACCCTTTTTCTGGCCGTGGAATTGCCCATGCCATGCCTTAGGATAG
TTCTTCCAACTCCAATTCAAGGTCCTCCTCCTCTTCAATATCAAATTCTTCTTCGGAAGA
ATCATATGACGAACTCATCTACAATATTGAATTTAAACTAGTCTAAAAAACTACAAAAAA
CATGCACCAAATTCATGTAAAAAAGGTGAAGTTAAAGCAATACATACCTTGTGGGCGCCG
AGCGGCAGTGGGCGGCCAGACGCTGTTCGACGGAGGAATGGCGCGCGGGAGATGAAGGAA
GCAACGGTGGCGCGGGGATAGGCCGGGGAAGCGCCGTTGGGTCACCGGAGCAAATGGGGT
GGCGCGGGCGGCGGC