morexGenes - Barley RNA-seq Database

Contig contig_44074
Source Contig contig_44074
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_44074 (7212 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_44074

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_59970	2	1406 bp	MLOC_59970.2	Available	Available	LOC_Os02g49150.3, FRAME:-3, EVALUE:4e-75, 13102.m05562 protein RNA polymerase Rpb4, putative, expressed
CDS Structure of MLOC_59970

Contig Sequence (7212 bp)

>contig_44074 7212 assembly3_WGSMorex_rbca.fasta
GGGTGCCTAGGCACCCGGGAGCTAAAAATCCGAGCGGTCAGGAAGAGGTGTGGTTCAAAG
ATTCACCCCCGGATTACCTGTGTAGCTGAGGTAGTTCACTTGGAGGCTTTTATGTTAGCG
AGGGCAGTAAGGGCCTCCGCAATCTTGCCTTCATTGATCGACCTAGTGGCCTGTGCAAAG
AAATTTGGATTTTTGCAGGACTGAGTTCCTGTTCCTGGTAATATATAAAATAGCATATAT
CCCAACTGTCAGCAAAATACACTGACCTTGAGAGACGGTATGAGTGCATAAACCTCTTCA
ATGGTCTCAGGCCCAATGTTCGCTATCATGCATATCTGTTACAGGTGCAACAAGCCATTT
CATGTTAAAATGAGGGAAATGAGATGCAAGAAGGTGAGAGGAAAAGAAGGGTTACGAACC
TCGCCATCATTAACACCATAGTCTTTAAGGGGTCTGCAGCTACGAGTCAAGGAAATTAAC
TACAAAGTGGTTGCTTGGCAAAACAATTTAACCACGTAACCAATTGCAATATCTAATGCT
AGTTCTTAATCAAAACAAAGGATACTCCAGGATTTCTTTCACCAACTTCGCAGAGGTGAA
GTGATTTTCTTCTTTTGCATATTGAAAGGCCTTGTCAAACGACCTGCCGGTGCAAGAACA
AAAGAGTAAATATGAAGTCACACAAGCTAACTGACTGGAACACCACATAAACAATTATTA
GCGGAACATAACAGAATCAAAACAACAGATGTTCCTTACTCGGGAATTTTTATCTTCGGA
TCCTCTGATAAGATAGCCATATGTTCGTGAATTTTCTGCAACATTTCTGCTGCTTCACAG
TTCGTTAACAATCTCGAATTTGGAGACATATCTGCAACCAATTATTATGCGGGAATCAGC
TTGCTTATTTTTCGTTTAGACACAAAGGGCGTTTGAAAATTATAATAGAAGATGTGTGCC
CATTTCAAATGATATAAAACTAACAATCTCATTATACAGAACTTCTCAAGTAAATAGCCT
ACTGAAATTCCATAAACCACCAAACTTTAACTACTATTAAGGTTACTATGACAAAAATAA
GCCTCTAGAGAAATAGAGGACATTTCAATGGAAGGAACTGACCAAGCTGAAGCTTTAGTT
CTGCATCAGATATTGCAGGCTTTGCATTTGATGTGGAGCCCTTCCCACCTTTCCCAGCAC
TAAATGCCTTCCCTCCTTTGCTACCTTCTCCTATGAGAACATAATACATGAAAGAAAGAT
ATGCAAGACACAGAAAAGCAATCTATTGTGTAACTAGAACTTTAAGTTTTATCAGCAACA
CTCTTGAATGGATGAATGTATAGCAAAAGTACAAAATGATGCATACATACCATTAGAAAA
GGATGAAGCCTTTCCACCAGTTTTTAGGTTATTAGATGAAGCTTTCCCATTTGACTTGGA
GTGTGTGGGGGGAGCCTCTTCTTCGAAAAAATCTAAATACAGGCAGTGATATATGAGGTT
CTTGTATATTTTCAACTATATATCAATATATTATTCACAATGACTTATTCAGTTTCATTG
AACAATCCAGTAAATTTTAGTGCTTATTTATGTACTGTGATCAGATATCCTTCCCTATCA
AATACTGCAACAGTTACAATGTAAGCACCTCAATGTTTACCATTTGTTATGCACAGCCAT
AAAGTGGTGAAACTAAACAACAGTGTCTTGCCTTCAACTACAAATGATATGAAGTGTCCT
TTCACACTCAATGTAATGGTAAATAACATCAACTATGAACAAATAGTCAACGAATCATCT
GCAAACAAAACCAAAGGGGAACCACAAACATGGTATATAACTTTCTTCCGACATTTTTTC
TGTAGTATTCAAACATAAAAGTTTACTACCTTCTTGCTAAAGATGCCCTAAGCCCTAGGG
TAGCAGAGTATAACCGTACAAATGAAATTTTCTAACAGTGATAAATAAAACACAATGGAT
GCTGATCATGTCAGACAGATAATTTGTAACGTGCTAGCAGACGAAAGTGAAATTCTTCTA
ACAAAAGCAAATACCAAACGATTTTCTCATGGGGCAGAGCTGTGATAAATGTAGTAAAAT
AAGATTTAAATAGAACAGCAGTGAACACGTGTGGTGTGACTTGGCAAGCCCAGAATGCCA
AGTAGCCAGACATAAAACATATCTTAAGAACCATAACGTGAGCTGAATATAGAAAAGATT
TAGTCCAATAAATAAACTGTTGCCTGAAAATGTTTAATGACGATATTGGGCAATATTATT
ACCATCAGAATCAGAATCAGAATCAGAAACGTGAACGACTTCATTAGAATTGTTCTGCCT
TCTGCTCGGTGCTCCTGTAAGAATAACCCAGTTAAGAAATCTGTCAAACTCTAAACTTGC
CTTCGAAAGCTACATTTTTATAAAGCTGTAAAATCATCAATCATCATATAGCAGGATCAC
ACAACTGAACAACAACAAAATGTACCATAAAAGGCTTAGATTAAAAACTCCCCTGTCAAA
CATAAATACCTTTATTATGTTCGGTTTTGGCACCTGAGGCAGTGCAGAGGTTGTCGCTCC
GGTTTGGCATGGCAGAGGATATTACTGGGCGGGGCATGGGATGTCGAATATCCTGCATGT
TCTGAAGGTAGTGGCCGTGCGGGGCGGCGTTGGGGTTGGCCCTCAGGTACAGGTTTGTGT
TTGGGTTCAGTGTGTGGATGGAGTTGCCTGAGCTGGCCATGGGAGATTGGCGATCCTGCA
GGCGGCCCAAGGCAGCTCTGAGGTTAACACTCAGGTTCAGGTTTCGCCTGTAGGAGTTGA
CTGAGGAGGGTATGAGGTATCGGAGATCCTGCGGGTAGTGAAGGTAGCCGCCGCGCAAGG
CGACGCTAGGGTTTGCATTTATGTTTGGAAACGGGAAGGAGATGGTTGGGCGGGGCATGG
GGAAGGAGATGGTTGGGCGGGGCATAGGGGGGTGAAGATCCAGCGTGTGGTGGAGGTAGG
GGACGCTGTGAAAGGGAGAGGTGGCCGAGGGGTGGGGGTAAGGGCCAAACGGCGGCGGCG
GGCCGGCGGCGGCGGGGAACATGGGCGCAGTAGTAGGCGTAGGGTTAGGAACCGACCCGA
AGAGAATACCCATGTCGAAGGGAGGATCGAGGTTGTTAGTGTTCGGATTAGGATTAAGGT
TTCTGGCTGGAGGCGCCATGGGAGGCGGCGGTGGAGTAGATCTGGAGAAGAGGGAAGAGG
AAGAAAGTTGGAGGTGGGATGAAGCGGAAATGGAGGTCAATAACTCAAGATATATAGGCG
GTGGTTGTTTTGTTGCTGTTGTGCCCCGCAATATCACTTTATTTGCGCCCCGCAATTTTT
GTTTATTTGCGCCCCATAATTTCACTTTATTTTGTCTTAAAGCCTCTCAGTTTCAAACAA
GTTGCGGTACGCTAGAGTTGAAACTCTTAAGATTTCGAAACCAAGTCGTGGCTCTGCCAC
GTGGATAGCTAACTTCCTCGCGCCCATGCTCATGACTAGTTCTCTTGCGATAGTGCTGCT
AAATATTGCTATTTAAATTTGATTCCAAAAATACCCAGTACAATATGCAGACTTGATGCA
TGTATCACTCCATTCCATGCATTTCAACAAGACAACAATGTTGTAGTGCGTGTTTCTAAG
ATGCTTCGAAATAGATAACCTATTGCTGGTAAACATCCAAGCATATTGGCCCTTACCCCG
TAAAAGGAGTTAAAGCCAATCCTCCGTTGGCCAAGCGAGTAGTGCTCGGACCACTTCAAA
TATGCAAGGAATAAATCATCATGCTCTCCAAAGAAGTATATTCTTGAGAGAGAATTTAAG
GCATGTCATAAGCCATTGTAACACAGATACGAAAAAATGCGAACTATCACAGAACCACGA
GCATATAACACATGTCATATTTCAGAATAGGCATATGCCTCAGTTTCTAGTTTAGTTCTA
CATTTGATTCAAGGATTTTTTTTTTCCTTTACCAAAATAGTGAAGGTTGGATTAACTACG
GGCCTGCTTGGTTCCCAGCACACCTTGCCACACTTTGCCACATATCAAGTTAGGCAAGTT
TAACCAAGTTAGGTGTATATTTGGTTCTAGCCACACCTAAGGCAAGATTCTTTTGTTCAA
AATAAGTCCACGTGTCATACACACAAAAAGTGTGGTGAAAGTCCCTCGAGCAATCCAAAG
TGAGGCTAAGAATTTGAGCACATAATTAAGCTAAGGCAAGTGTGGCAGAAATAGTGTGAC
AAAATTAGTCACCAACCAAGTATGCCCTACATTAACAGCTGATCTTCCTCTGGGGAGGAG
AATTGGAAAACACCCGCACCAAGATGCTCAAGAATGGAATTTAAATACACAGACCAAGCT
TGTGTGTGCTTATAACTGCACCAAAATAAACAAAAACTTGTTCCAAGGAAGGCATGCGAG
ACATATCGACGGATATTGGCTCTCTTGTTGAAGGGAAGGACCATTAATATATCTGTTAGA
CTAAAACCCTTAGGAATAGCTAAATTTAGCCATGCACTTGTTCATAAACACAAATGATCC
ATTTAGTGTTACCTTATTCACAGGCAAACAAACCCAAAACCTAATAGGCTGCTTGCTAGT
GATTCCACAATGCCCAGCAACGTTTAATGCATTGTCATTTTGAGCAACTCAATCATCTAC
TCTTCCAGTTTTCCTTGAGACACCAAATTATAAGAACCCACCCACATATGAGTGAGACGA
CACAACAATGCAGTAGCAAAGTTGTCAAGGTTAATAATTCCGTAACAAACATTAGCCAGA
TGTATTTCTACAAGCGCACATATATAGATAATCCAATCCAATTCCACAATCCAAAGGCCA
TTGTTGTGCTAGGAAAAAATCCTGCTCCGAAAGTCCTACAGTCAAAAGAAGCCCTGAACC
AAAACAGTTATAACACACCCATAACAAAATCGGACGAAGACCACATAAACAACTGAACAG
TAAGCCCTCGCACCGATCAAACTGGATCCAAACATTCTCCAGAAGCCAAAATTTCATATC
CTTTGGATGCCAAAATCGTGACAGCAAAAAACCCTCGGCGGCGTTCTGCAAACCCTAATC
CCTAGCCAATCGCATCGGATCCTACCCGAGGATCCCGAACCCACCGGGGTTTCATCCGGC
GAAGGTCGCCGCGTTGGTCGAGGGTTGAGACATGGACGCAAAAAAAAGTAGGGGGGAAGG
GGGGATAAAACGGAAGGGGGGTCACCTGACTTGGACGGGGGGTACGACGATCCTTTCCCT
CCCTTGTTCGCCATTGCGGCTGCCGGCGGCGGTGGTGATCGGGATTCGGGAGTCGGTCGC
GTCGCTCTCCGCACCGACGCCGCACGCGCTCACTGCTGGCTGTCGCTGGCGTCGCGAGGA
GAGGGAGAGTGAGAGTGCGGCCTGCCTCTGCCTGGATGTTTATAAAGTTGGGCTGGGGAG
TGCGGGAGAGAGGGATGCTCTGCGGTCGGGCTCTGGGTTCTGATCGGTTATGGGCCCATA
AGTCCGGCACGCACAAGGGCCCAAACATAACATACAGCCATGCTTGCTCGGATACATGAT
GATGACATCTAAAAAAAGAAAGATAAATGATGATGTTGTTAGGTTGATCTTTTTCGTGTG
GGCCCAACGGTCCACCGGACCCTTGATCCACGCGCCCTGATCGGGGGCGTCCAATCCATT
ATGGTTGATGGGCCCCTGATCTGCGCTATAAATAAAGAGGTGTGGGTCGGGGCACGTGGT
ACGACGTTAACCGTGTCGCCAGACATCCCACCAACAGCCCTTCTGGTCTAGGGTTAGCGC
AGTGCTCACGGGAAGCACCGCCGCTACCACACCTCTTTCTGTCGCCGTTGCCGTCACCAC
CTCATCGATGGACGCTGGCGGGAGCACCTCAAGTGCAGGACAAGGTAATCCCCATCGTCA
CTATCGGACTTATCTAGCCTAGTAGATCCGAGGATTCCATCAATGGTATCAAATGCCTCT
AGGATCAAGATGGCTTCGGTAGAAACAGTCCAGAAAAGAAAAGATTTCCTCCCCACGACG
AACCCTAGAACAGGGCAAAGAACATTTAACAAAAAAACAAAAGTACACCGGAGTAGGGCC
TCGGGCCTCGCCGGCAAAGAACGCCGCCGCAAGGCCGCGCCTGTTCCTCTCGATCCCGAC
GTGCATCGGCAAGCCGAGGCGCCGGGACAAAGAACCACCCCGAGAGGTGCAAAGAGCTCC
ATCACCAAACCGCTCGACGGCGCGCGCAGCCGACGACGGGGATGGCAACGACGCGGTGGA
GAAAAGAAGAAAGGCCACGGGGCCGTCGCCGGTTCCCTCCCTGTCTGTCACAGGTAGAAG
AACCACCGGAGAAGCCTGCGGGCTCGTCGAAAAAGTAGAAGGGGCGCACCACAGCCAAAC
CGCTCGACGGTGGCGCCCCCACCGCAAGGTGGTCACGCGGCGGACGAGGGGGAAGGCCAC
GGCGCCGTCGTCGGAATCTCTGGTCGCTACCTCTGCTCACAAGTGGTGCTGATGGTGGTT
GGAGACAGAAACGAGGAGAGGAAGGAGAGGCACGCACGGCGCGGTGGTCTTTGACCCCGT
CGCCAGCGGGTGGACTGACCGCCGTCGTGGAGGCCGAGTCGATGGCGGCTCCGGCGAGCA
GGACCTAAGAGGCGGGTCCGAGCACCATTCGCGCCCATGGCGAGGAGGCGTTGGGAGATT
GGGAGCTCCGACGGCGACGGTTGACTCGGGTCTAGATGGGCTCGGGCGGGCCTCGCGCGG
GCCTAGGCGGGCCGGAGGCGCTGGAGGTGGGAGACTGTCTAGGTTTTTGGCGCGGAATGC
GAGGAAGGGTTAGGGTAGGCCCAAAATGGCACGGGAGGGTTGTTAAATAGGGAAAGGGGT
GTTAGGGTTAGGGGGTTTTGGGTGTTTTTCGACCCTCCGATCGCGGTCGGATGGTCTGAT
CAGAGAGGTCGATTTTGTGGGCTGTAGTGACTGTGTTAGAGAGGCTAGGTGGGGATGAGA
GGGAGACTCGTGGCCTGTGACACGATATTTTAAAACACCGAAAAGCATCTGCCGATAAAC
CGATGACAGTGTTGTAGGGTCGACTGTTCGGGTATCAAATGGACTCCGATTGCGGCGACA
TTTGGCAGACGGCCTACCTACACTACATTAAGACCGCACGCCAAATTTCCACCCACTCCG
AAAATCTTTTCT