morexGenes - Barley RNA-seq Database

Contig contig_44071
Source Contig contig_44071
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_44071 (10394 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_44071

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_59966	5	3467 bp	MLOC_59966.3	Available	Available	LOC_Os07g29450.1, FRAME:-1, EVALUE:0.0, 13107.m02958 protein expressed protein
MLOC_59965	1	347 bp	MLOC_59965.1	Available	Available	LOC_Os01g07970.1, FRAME:-3, EVALUE:5e-17, 13101.m00824 protein expressed protein
CDS Structure of MLOC_59966

CDS Structure of MLOC_59965

Contig Sequence (10394 bp)

>contig_44071 10394 assembly3_WGSMorex_rbca.fasta
TCTAAAACCAGGACTAATGGCCTACCCTTTAGTCTCGGTTTTTGCCACAAACCGGGACTA
ATGCTCCGCGGCACGCCACATGACAGTCGCTGGATCTTTAGTCCCGGTTTTTGCCCAAAA
CCGGGACTAATGAGGTGAACCGAACCAGGACCAATGTCCTGGCAAACTGAGTCGGGACCA
ATGCCTGGCATTGGCCCCAATTTTTGTTTGAACGGGGGCTATTGTGGTTTTCGGCTTCGG
TCGAAAGACCCATTTTCTGCTAGTGCCTTTTCCGACCACATCGCTTTCTCCGTGACAACG
AATGACAGTACCTTTATCCTAAACTGAAAACAAAGATGTGATTAGAAGAAATCAGTCAGG
CAGACGTCGGTCTCGATCAGTACGCATGTCTCCGTGGGGTTAATTAACTGACAGCGCACA
TCTTGAATCAGATGATGGATGGCGTGCGACGTGCTCCATCAAATTAGATCAGCTAATGAT
CGATAAGCACACTGACTGGGATTACTGGCTTATATCGGGCTCCTTGACAGGGACGGGGAC
GCCGGTGGAGTCACATGCATGAATCATTGCTGAGGGCGACGTGCACTGGATGAACCCTGA
TCGGGAAAGACTTGACTCATTTTCCGGAGACAATGATACGCAAGGTGCCAAGGTCGATCT
CACCATGCATCGTTGAGTAGAATTGGTGATAACAGTGGCACTGTAGCAGGAAGAATTTGT
AAGCATCTGGATCTGTGTCTCATTGAACGGAGATCGAGAAACATCAATGGCGGTACACAG
TATACATACATCCTGCAGCAGTACATTATTGCTTTTCTGTTTCCTCACGACATTTTTTGG
TTGCAAGTATTGCTACAGGACTGGAGGTTTTTCATTGTCCTTTGATCAGTCCATCTCAAC
AGAGTGATCGATCGATATAGAGGAGGGCACGCACGTTCGTGGTCTAAGATCATATACACA
AAAAATTCCGTTATTTATTTATATACTGTACACAGCTGCGTATGCATGCATGGCTTCCCG
CCGGCCGGTGAGTTGGGCCGTTCCTCGGCGGCCACGTACGTGCGTTGCTTTCTAGGCTAG
CTATGGCCTGGCTTGGTGTCGTCGCGGGTGGAGTCGGGCGGGGCGGAGGCGAGGCGGGAG
GCGATGGCGGAGTGGTACATGACGTCGTGGAAGCTCTCCGTCTCCATCATCCACAGCCGC
AGCTGGCGCGCCTTCTCCTCCGTCAGCACCCCGAACCGCCTCGTCCCCCGCTCCTCCTCC
GGCGCCGGCTGGGCGTCGATGTAGTCGGGCTGGCCCGACCACCCGAGGAGCGGCGCCCAC
CACTTGCCGCTCCCGCCGGCAGCGGCAGCGCAGGCGCAGGGACGGACCCGCGGTGCCGTG
GGGCGGACGGAGAACGTGGCGGCTCCTGACGCTGCTGCCATTATCGGGGAGGAGAGGAAT
GGAAGGGGGCCGCGGGGCGAGTTTAAGAAGTGGCGGCCGGGGGGTGGCTTCGCGCGTCCG
TTGCTAAAGGTGGTGGGATTATAAAAAGGGAGGGGGAACGGGTGGATAAGCCAAGCCGGG
CCCGTCCTCCTCCTCCACCGTACCCAAACATGCAGGTAAAGCCCACATGTCATCATCAGG
TCATCATGAACAAGCATTCAATGATAAATAGTTCCAAGTTACATCCAACGTTTCAATAAA
TCAGGTCAGGTTTTGCCTAGCTCAAGGACTAAGAATTACATCTCTCAGACAGACATATAA
TGGTTATTGGTGTGTAATGAAAATTACAGACACAGCACAGCCTACAACAGCTGGGTTTCT
CGTCTCTTTTCTTCCTTCTTTTATACACACACAACGGTGGGAAGCAGCAGCATTGTAGAA
TGAAAGCCCCTGCCTTCTTCCGAGGAAAATAGTTTCTTCATGGGCTGGGCTGGGCTGGCC
TGCTGCTACCGGAGTCTTAGAGCTGTGCTGCCCCTAGTTGGCCGAGAGGAAATGCACACG
GGCGAGCGGATACTCCTTCCCAGAAACCCACACGCCGGTCTGCGACCACTGCACATCCTC
CCACTCCAGATTGTCCTGCAGCACCTGTGTGCCACTCGCAACAAACAGACAACATGGTTT
CAATGATGCCGCCTACGCCCGGTGGAGGAAGAAAGAAGAAACGATGTGACTTTGATGTAG
AGGGAAATTACCTCAACTTGTTCAGCTGGCAGTGGGATACCGATAGATCTCATGGCAACC
TCTGGCATGGCTTTCTTACACCGTGACCATCGGAACACGTCCCGGAGTTCATGCTCCGTG
GAGCCCCTGTCACCGTTTTGCAAATGGTGGTGGCTATTGTTCTGGTGTTTCTCCGGTTCC
AAATCGGATGCATTGGAATTTGATCCAATGGGGCGAGGCCTTTCCCCACTAAAGCACAGC
TCATACCTGCGAGAACTTAAGGCCAACAAGACAAGAATTGAAAGACAGTGAGTAATATGC
AAGTGAAAGCACAATTTCCACAAGAATGCCAATAAACATAAAACAGTCAGAACAGTAAGT
CAGTCGTTTATACCTATTGAAATGTGTTTCCAAGTATATGACTTCACCCTTTTTCAGCCT
CGCCGAAGTATAGAGAGACTTCTTCAATCCCTTGTCTGCCACAATGCTTATACTGTATTT
TAACCTGGAGGAAGAAAAGACAAAACAAAAAAATGCTTACTAGGAGCAACCTTGAATCAA
AACAGAACAAGGCAGCAGCCTCTACAAGCAGAACTGCAGAAGACAGAAGCGCTCAAAAAC
ACGATAACTGCTATGACACAGAAAATGGCAATATAGGTACTTTGGTGAACTGAAAATGAA
GGGTTCAGGAGGTAAGTCGGGAAAGTACCATGGCTCGTTGCAGAGATTGTACTGTATTGT
AACTTCTCGAACAAATCTTTGTTGACGTAATGCATTCTGCATGAAACATATTGATAAATC
CTTAGTAGAGAATAGAAACAAAGGTCACTGGTTACAAGAAGAAAATCAAAAATATTGAGA
AGTAGAACTTCTATGCATTCAAGCTGAACTTTTTGTTAAGAGAGGAACAAAAGAGTATCA
GAAAATTACAGAAGCTGCTGCTCTTGTTGTCATTGTACGCTCTACTGCAACTGGAGCTAG
TGTAGGCTCCACGGCTGACGTATGGCTAAGGCGAGGTTCGAGATCAATGGCACCACCACC
TTTCTGCAAAAGCGTAAAGCATGCTAAACAACCAATCTTCAAACAGTACTCAATCAAAGG
ATTTCACAAGTTTGTAGCATAAACAGAATAATTAGAAAGGGAAATATTATAATATTCTGT
ACAGTTTAACAGTCTTGATACCTTAACAATGCAGCAGCGTTCTATGCGGAAGCTACAACC
AATACCAGCACCCCAAGCACGTGAACGGACATTGTTCCTTAGTGTTGAAGTATAACCTGG
GAGATATACCATGTTTTATAAGAATACTGATTCAACGATCTGACATTTTAAGCAAGTCCA
ACTGAATTGACACAAAATTAGTTAAGGCTTACTGTCTTGTGGTGGTAGCACACGGACAGT
TGCACGCAGTTCTTGGATGGCAGATGGTGGGGGTGATGATGTAGGGGAGCAGTAACCAGT
ATGCATTAACACTAAAAGAAACGATCATTAGAACACCGGCTTTCTGAGCTACTTTAGAAG
ATTGAAAAAAACAATGAAGTACTTACCAGCCACAAGGTCTGAATCGTTTGTATAAACATC
TGTTCCCCAAAGCTGAGCGCCTTTTACCTACAAAACAGTGATTTTTAGTTTTTAATAAGT
GAATAAAGTAGTTAATGGAAGAAGTTCGCTACAATTGTTAAACAACACTTGCTAACTATA
AGAGCAGCAAAACAAAGGGGCGATGTAATCTTCAGCCCACATGATGTCAGAACGTGCAAG
ATAAACAGTGTGTTCGTCCATATCTCAGAAAAACAGAGTGAAATAACGATTGAAGAAACT
CCTATAGCATGTCAAATGCCAGAAAGCAAGACAGTAATGCGCTTTCTAGCGTTCATCATT
TATTGTTTTCCGTATGCTACTTGAGGAGAAAGGGAAAAAAATCCAGCAACATAGGCATGG
CGACTGATTAAGTGACTAAGAGTCTAATACAGAAATCACCTACGAATTAGTAGACTTACT
TGCCGATTAGTGGAAGTAACAAACTCAGCAGGTATCCGAATTTCAAGAGTAGGAACATTT
TGTTGATTCTCAGCATTTCTAGCATCTGGGGTTGCTTCAAACTCTTTCCAGGATTTCAGA
AGCTCTTGCATGCATTCACCAGCTTTATATACAATTGCAGATATCTCAGATTTACCTGCA
CCAATGAGGATACTAAGATAACAAATATAAAGCTGGCGATTATGGACCATGGCAAAAGAA
TCATTTTATGCAGCTTGGAACTCGGTCTCATGAATAATTTCTACGTGAAAGGGATTTCAA
ATAAATGGATCATCAGAATTAATCATTTTTTGCTCCAACTGGATTTAGCCAAATGATAGA
AAAAACAAAACATGCATATGTGTGCATATAAAATGGATCACCCCAAATGCAAAGAGATTT
TGAACACTGAAGTGGATGTCAGAGCACTAAATCCCACAGAAAAATGTGCAGTGAAATCTC
AACGTGAACTAAAACCTTATGAGAAGGAAATATAAAATTATCTAGGTGCTAAGCTGTTGA
TGACTCCAGTTTCGAAGAAAGCACCACTATCCATTGTTCCATTTTATTCAGCTAGGAATG
AAGATAATCTACTGACCTTGAGACCTGCAAGAAGAAATAAAAGAGCATAAGATTTTTCAA
TTGGGTTATCACTTATAGTAATTTTATCACCTAGTAATTCTCAAAGTGCAGATTTCTAGA
AATGGAATGTGATTCGTGATAGCTATGCTCATACACACTATTATGCTATTTGAATCAAGT
ACAAGAAACATGGCAAGATGCAGTGTTAGGCTTACCCTTCACCATCACGCATTTTGGACC
GGAACCGAGGTTCTCGTTGAGATGCTTGACCACCTCCCTTTGAACGTGCCATCCTCCTGC
GCTGGATACTTCCGAAGGTATCCTTATCTTTCTCTGTATCTCCTTCAGGACCAGTATCAT
CAGATTCTTTGTCATTATATTTACTCCTTTGGTCATGCCTGTCTCCTGTATCCACATCCT
TCTCTCTTCTCTTGTCCTTGGAGTTATCATGAGATTTCCATGTGTCATCTTTAAGTGTCT
TCATTTCAGCAGCTGTACTCTCATGTTCAGCGGGTTTAACAGCTCCATCGGAAGCTGCTT
TTTCCAGCATTGCAGTCTCCTTGTTAACTGCTATTAATGAATCCTTCTTGGAAGAATCCT
TCTCACGGTCATTGATTTCCTTGTCCTTCTGAGAATCTTTTCTTTCCCTGTCCCATTTTT
CCGCATCCCGATCATCCCTTTGAATGTCTCTTCGTTCAACACTGCCGCCTGCAAGCTGAA
TACCAATTCTGCGATCATTTCTTTCAGTGTCTCTTGCACCAAAATCTCTATATTTTTCAT
CTTTCTTTCTCCTGTCCTTGTCTCTGAACTTATCTTCACTTTTAGGTTCTATTTTATTCT
CACCAATAGATTCATGTGCATCCTTGGAGTTGCGTTCTTCCACAGGAGTTGGAACCTTGG
GAGTTTCATCAGTGCCTTGCAAACCAGGACGGAAACGCCAACCTGCAGTATCATCTGGCT
GTTCAATATATCTTTTACCCCTGGTGTCTTTATTATCTTTCCAGGCTAAGTTTGAAGTTC
CAGTAGGATGGCTATCCTTATCTGATTTGACAACATCGCCTGTGAAATCACCATGCACCC
TTCGCTCAGCTCTTATTTCATTGTCATCTGCTCTGTTGTTTGTCTTTACATCAGTCTCAA
CTTTATTGCCTTGAAATTCAATCCTGCTATCACCATGGACATCTCGAGCATCAGATTTTG
CCTCCCGATCATCAACCTTGGTGTCCCGTGCATCTTTGTTTTGTTTTGATTCTAATCTGC
TGTCAGATGGGATTGTGTGGTCTACAAAGTTGGAGGAGGCAACAGGCATCCGATGTGTCA
GCGATGGTCTCTTGTCATCACGCGACTCAACACGCGGTATTTTGGCAAATCTTACATCAT
GTTCAAAAGAACCATGGAAATCACTACTGCCTGGTTGAATGAGTTTCCCAGAAGGGCTCG
GATACACGCTGCTCTCGTCCAAAGGCCGTTTCGCAGGTGTAGAGTGGCTACCCTCCTCAT
GCAATCTTTTTGGAGCACCACTCATTTTACCTCAAAATGTCAAGGAATCCTTCAATGTGA
ACCAAGACTAATGCAAATATAGCAGGAAGGTCTCGAAGTCTTCAACACAAGGCGCTGCCA
GGAAATATTAGAATCGGTCAGAACATATTAGTTACTTTTTCCTTTTAAAAGCTAGATAGT
ACAATAAAAAAATTGGATACTTGGGTTGCATGGTTTACAATAAGCTTGGGGTACAGCAAG
TCATTTAATGTAATGAAGATGTCCTTTTATGATGGTCTTGACCAAAATGTTTGGGTCCAA
ACAGATCCGATCATTTCTCGAGACAAAAGAAAGAAACTCTTCCCAGCATGTAAACACTTA
ATATGAACATCCAGCAAGCCGTGTACCAATCACGATCCAGAGAATCAAACTAATGAATTA
CAGAATACACAGTATGTTATAGGAAGCAAGTGATAAAAATTTCAAGGAATGGCGTCAGTC
TAGGGGACACGTCGGTGGTATGGGATTGTATAAACAGGAACATATTTGTAACAAATTTTT
GAACTAAATTCTACTCCCTCCGTCCCATAATATAATAGCTCATTATGGGACAGAGGGAGG
AGCTATCATCCAGTTTAGTCATTGTAAAACTGGGACCCATCAGGGCGGACAAAATGACCA
GGAACAGGGTACGATTAGCACCAGGGTGGACAAAGCATCTTCTTCCCATTTTTCTCACAG
AACAGGACAGCGGCCAGAATGGAATGGAATTAATATGCGAGATTAGAAGTTGCTCAAAAA
AAACTAATCTGGATTGCTCACGCTAAATAAAAGGCAAAAAGGATGGCCAGATTGTTCAAG
CAAGCTAGGTTCCTCACCAACAAACTAGAGGGGGGGATCTGGATGGTGCACACCCAGAAT
TTGTGCAGGTTAGTTTGCGATTAAAATTATTACTGGATGAGATGACTAATTTGTCATACC
TCCAAAATCTGGTCTAAGATTGCGGACAGAGTGGAGACAGCAGGGGGGAAATGAGCAACA
GATGGAAGAAGGAAGAAGCCTGAAACATTTGATTCAAAGTACATCATTTTTATCATGCTA
GGCGAGTAATTGCGCCATGAACAAGATATTGTGCAGTTTTATGTCTAATTTCATCTCAAC
TTGTGTCCTCCAACAACTTCAACTCGATTGCACTGCTGGCACTGAAATACTAGGGCCAGG
AACACGGCAGAACTAGCGCCAGAATCAGACATAATATCTTCTTACCTCAAGTAACAGGGC
AGCAGACAGAAGCCCAGAACAGGATGGAATTCATAAGCGAGATCTAAAGTGAGATGAGAG
GACGTTGAATCCCTAAAATTGACTCTGCCAACCTAGGGCAGGGGGGCAAACGCGCCAAAA
GCCATTTCTTTTGGCGTTCACAAAACCCACCCACCGATATAAAATCCATCAACCTAGCGC
GCGGTCACAGACCAAGCAAGAACCGTAAGCGGGGCGGACCTAATTGAACCCACAATTACG
CGAGATTTAGAAATTGCTGAAAAAACCCTAAAATGACCAGGAACATGGTGGAATTAGCGG
CGGCATCGTCTTTCCATTTTTCTCACGGAACAGGACAGCGGCCAGAGCGGAATGGATTCC
ATATGCGCGGGATTAGAAGCTGCTGGTCAAAAAAAGAAACTAATACGGATTCCTCACGGT
AAACGAAAGGCGAAAAACACGGCCCCATTGCTCGAGCAAGCTAGGGTTCCTCGGCAACGA
ACTACTTGCAGGGGCGGATCTGGACGGTGCGCAGCGCGCCAGAATTTGTGATGGTTAAAT
CATCACTGGATGAAATGGCCGAAATGTTCATGCCTCCGCAACCGATGTCTAGGATTGAGG
AACGGGGCGGAGACGGCGGGGCGGGAAATGAGGCGGAAAGGGAAGAGCGACGCGCGCGGG
GTTTGGCCGGGTGATTGACGAGGCGTCGGCGGTGGCGCTCGGGTCAGCTTGCAGGGATAG
GGGTGGGGATGTTGGAGGAGGAGGAGACGCACCTGCAGATCGGCCGGTGCCGGCCGCTCT
CGGAACGCCGCCGCCGAATTGCCTGCGGCCTGCGGGCGCCGCAAGAGAGAGGGAGGGAGG
GAGGGCGAGACGAGAGCGCAGCTGTGCGCGACAGTGTTTGGGCCTTTTTGAGGGGATGAG
CGAGCGAGCGAGGAAAAACGCTTCGGGAGGGTGAGGTGAGGTGAGGTCAGGGTCAGCCGC
CCACACCGAGCGGCTGCTTTGCCCTAGTCCCCTCGATTCGGTCACGTCCATTCTCATTTT
TATTTTAAAAACTAGTTGAATATCCATGCGTTGTCATGGGACAATATAAAGATGCTAGAT
ATTAATGAAATGATAAAAAAATAAACACAGATGCCAAGCAATGCATGCCTCTGGTTTATA
AATGTGTCATGTCAAATATTGATATTATTTTCCGGTTTTATCTTTCCACAACAACCAAGC
ACCACCCACTCTTCCTCTCCATGGAACATTTTCTTCTTTTGCCCTCATCTAGTGAGACAG
GTTAGGGTCTTTCTACTACCCATCCCAAGCCACATAACGTACCATGACAAAAAAGAGTAA
AAATAAGGTATCTATTGTACTAAATAACATTAAAAACCTGCGAACAAAGCCATTAATAAG
TGGTGAAAGCCAAGCAAACATTAAGATCCATAATTTGGTCAAACTTGATAGATGAAATCT
ACTCTCTCTATTCACAAATATAAGATGTCATAACTTGATAGACCAAATCTACTCATTTCA
ATCCTTATGTAGGCCGCATTGAAATATTTAAAATATCTTATATATGTGAACAAAGGGAGT
ATGTTATAACTTGTACAGTATCTTGAGCTACCGCACCGACAACCCACCCCTCGTTGCATG
AGAGACATATCTTCCTCTCACGTCAAATGTGTCCCATTCAAACTCCAATGCTTAGTGTAC
GTATCTTTTGATGATGAGACACAAAATCTGAGACACATCAAAACACCAAATGTAGAGATG
ACAGAAACAGAATAAGTGAAAAATCCTACAACCACGATAAAATATATTTCAATAAAGAAG
TAACTTTTACTTTGTCGAAATAATGGTAATGTTTGTTAGGTTGCCTCAAAACCTCAAAAG
CTAGACCACCATTACTTTTTTTAGGTAGTCAAGACACATAATTTTAAAATCAAGTGGTAC
CTATTAAGTGATGTAAAGTGTTGCAATTGTAACCATTTGGTTGAATCTTTTTTTAGGTAG
CCAGGCACATAATAATAAAAAGATGAAGTTCTGTTGAATTTCAATGTCCATGGAACAAAC
ATTGCATTTCTCTTAGTCCAGGGAACAAACATTGCAATTTTAGGTAGGCAGACACATAAC
CTATTTTAAGGGAACAAACATTGCATTTCTCTTTGTCCAGAATTTAATTATTTGACTCCA
TTTATCCAGCCCTTACCACATGAAGGGAAAGTAATGCATACAGAAAAGCTAGTAAGTTTA
AAAGTAATTTTATGAAAATATCATACCAATGAAAACATATTGTAACGTCGGTATTCATCT
TGTACTATTGCTATCTCAAACAAATAGATTTTTTTTGCAAGAATTTGCTCATATAGCCCC
ATGTATGAGCTAACACTAAAGTAGGATGCATAATTATATGACATGATGCATTATCACATT
AGCTTCACAAACCTAAAGGTCACTAAGATAATGCCCATTGCGACTTCCACCAAATATGTA
CAATGTCTTGCGGTACAGTTGTTCCATGCTGCAGTAGCCAAAGTTCACATCAATGGTACA
AAACTAAATATTGTAACAAAAAGGAAAAATAGGGTAACGGCCCTACAAGTTACATATAGC
AGAGGCAAGAAAAAGATATGGTGCACCTCATAATGGGGTTTAGGTTGTTGCCCACAAATA
GATAATGCATGTCATCCATCGCTAGCACTGACAGTACTAAGACCTTACAGAGTAACATCT
TTGTCTTATGTCCCCGTTGAAACTTTCAGAAATGATTTCAACAAACTTGATAATAGCCCT
AGGAATAAACACCGATGGGCTAATGCAGGCCCGCAGGGCTTGGACACATCCATTTTTTGG
GCTATCATCTCTCTCGTCTTCTCTGCATAGCTTCACAAGCACCATTGCCACCATCTATTT
GTTTGTCCATTCTA