Map Locations of contig_44054 (9401 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_44054

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_59942 1 947 bp AK361195 Available Available None
MLOC_59943 3 3394 bp AK372882 Available Available None





CDS Structure of MLOC_59942






CDS Structure of MLOC_59943






Contig Sequence (9401 bp)

>contig_44054 9401 assembly3_WGSMorex_rbca.fasta
CCACCGCCATCGCTGGTCACAGCACGAGGCCAAGACATGGTTTTCACCAAGCTCCACACC
ACCTAAGCCGCACATCATCCTGCATTGGCGTCAGCTAGCCCACCAAGCCTCTTCCCGCGC
TCTCCACCTTGCACCAATGCCGACTGCAACACTACGCGAGACTAATGCAGCCGACGGTAC
CCCCATGGTACCTAGCGGCCGCCAGGCCTAGATGAACACCACACCTCCGAAGCCGCCATG
ACCTAGACTCGAGCACCACCAGATCCAGATCAGGGTCAAGGGTCCCAGGCCGCAGCCACC
GCGGAGGCAGCATGACTAGACGACGCATTCCTCTCCAGCCCGCTAGAGGACCGAGCTCCG
CCGCACCATGCCGCCGCCGGGAAGCCTGGCGCCCCCGCGAGGAGAGAGAGAGAGGGACGC
GGCAGGAAAGCCCGGGCAGTGCCGGCAGCAAGGGGGAAGGAGGGCCGACGACGGAAGGAG
CAGGGGTTCCCTCGAGTCACCTCAGAGAGGGACGCGGGTTGGGGTGGGGAGGCAGGACTC
TTGCAACATTGGAGTGTCTATGGCTGCCTTGGAATGGTGGGATCGGCTTTCCAGCATCGC
ATGTCCCACTTGCAACATTCGCGGACAACCTTGTTGTGTCCGCATGTCCCACTTGCAACA
TTCGCTGACAACCTTGTTGTGTCGAGCGCGTTTGGCTGCACCAGCAACGTGGACGATTTT
GATATCTTCCAAGTAAAATAATTTTGTTGTATATTTTCTCTTTTTTTGTTTTATTGGTTT
GTGTTTTTGCTGAAAAAGTTTAAAATGTCTTATCAAATTTTAATTAGAAGAGAGGCATGG
CATTAGGCCAGCGGTGATGGCGTGCAGGGAGTGCGGAGGGCCAAGCAAAGGCTGCATGCA
ATGATCAGCAGCACGATGCGCAACTGATTTCTGAAAGTTATCAGCCGGCTGATTATAACA
CTTTTCATTAGTACTTTGTTTATTACAGAAGTTGAGGGGAATCCCAAAGTATAGTTGTAC
ACTAAGATTTTTAACGTAGCTCAGGAAATCGCTAAAACACCCGCAACAGGCCATAACAAG
GGGCTGCCAAGGCTGTAGTGAAGAGAAAAGGCTACAGCACCATATAATCACCTGATAGAC
ATTCACAAGAATCTTCAAATGCACACATTTGATAAACGAAACAGTTGACCCAAGTAGAAA
ATTTCAAATGAGGGTAGCAGAACTGCATGCATAACAAAGGTTTACCAACCAGGTTGTACT
AACACAGAGTTACCAAACTACTTAAAGACAAGAGGAGGACAGAGGTTTCCCAAAACTGAT
GGCGCACAAAAGCTCTGATCTCTCTTAGTATTTGATCGGGGCCAGGATCTCCAGCTGAGT
TCCCAACTTCTCCTCGGCTGCCTTCTCGGCCTTGACGCGGAGCTTCGCCAGCTGCTTTCT
CCTGTCGTACGAGACCTTGGCCTTCTCCTTCCTCTTTTCCTCCAGCTCCTGAATACAGGC
CAAAGAGCGATGAGAAACGATATGCACAAACATCAGCACATAATGAACAAAAACTGGCAA
CAGGGGATGTACTGTAATGATAACAAAAGACTAGAACTAAAGAGCCTCAGAGATCTTGGT
GGTTGAGATCATCAAGTGGGATAAACCCATCAAGAGTAGCAAATATTTTGATAACATCAC
AGGCTCAAAAGAAAATAGAACACCAGCAAAACTGCGGAATAAAGATGCAGAGAGTTTAAC
TGAAACCCAAAAGAGAACAAAATCTAGTAAGAGCACAAAAAGGCATGATCTGTCAGAAGT
AGTTGGTTGTGATAATCATTTAGTATCAGTGGGAATCCGAACGATTTTCTTCATCACACA
GAAGCATGTAATTGTACCCAATAGAAGACAGAGAGTAACAAGGTTGCAACCAAAATAAGG
AGTGCATGTACAGCCAGTCATATAGCAATGCAAATGTAATTCAGGAGATGCCATGATCCG
TCAGAAGTAGCTGGTTACACTAATCATGAAATATCAGTGGGAATCCGAACGATTTTCTTC
GTCACCCAGAATCGTGTTAAACCAATAGAACACAACGAGCAGCAAGATTCATAACCAATG
TTGGATTACAGTCAGTCTAAAGCGGTAAAAACGTCCAAATGAAATTCAGGAGATGGCATG
ACCCGTCAGAAGTAGCTGGTTATAATAATCATGAAATATCAGTGGGAATCCGAACGATTT
TATTCATCACCCAGGTCATGCACATCTTGTCAGCTAGCAGAACATAAAAGAAGCGGATTC
AAACTGTATTGCTAAGAGGTTTGCAAAATACTAAGAAAGGCACGTATTGCCAAATGATAA
AAGAGTACAAATATGCAGATATAATCCAAGAGATGGCATGATCTGTCAGAAGTAGCTGGT
TGTAATAATCATGACAAATCAGTGGGAATCCGAACGATTTTATTCATCAGCCAGATCATG
CACATCTCAGCAAGCATGAGTACAACTAGACCCAGTTCTCATCAATGACTGCAAGCATGA
GCAAATAAAATTCTTCACGGTATAATAAAGCATGATCTGTAAATGGCTTCTAAAATCCGT
GGGCATCAGCATAAACATTTTCCAAATGCAGAACAAATCATTTATCAACAGGGGAGCATA
TATGACAAAAATCTGAATATCTACTAGAGTACCAGCAAACCAGAGTGAACTTTCATTGAA
TGATTAGTACAACTAGACCCATTTTAGTATAGCAGGACCGTAACAATCGAACGCTAGCAA
CTAGTGAGCACCGAAGAAAAAAGGAAAGGAAATAGCTTACCCTGATGGTGTCGGCGTAGT
TCCATCCGACCTCCTTGGAGAGCTGGCCCAGGAGGCAGTACCTGTGCCCGGGCTGCAGCC
TCAGAACCCTGCAATATCACAAGCAACGTCAACACCAAACATACATATACGACGTACGCA
GAGATCTAGAAGACAGTCGAACGCCGACGTACTTGAGCGCGTCGGGGATGACCATGCGCT
TGGTCCTGTCGTACGGCGGCGGCACACCCTCGTACGCCTTGAGCCTGGCAAGTGCGGCCT
CGCCCCTCGCGGTCTTGTGCGGAATCATACTGCAGAGCGCCACCAAGCAAAGCATCATAA
GAACACACAAACCCAAATGGGAACGGCGACATAAGTACAGAGGCGGAAGCGACGGATCTA
AGCGGCGGCAGCGTCGCCGGCGACGTACCCGCGGATGGTGCGCCAGAGGATCTTGGCCGG
GGCGCGGAAGTGGATGGGGCCGTGGGATGGCTTGGTGTTCATCCTCTTGCGGAGGAAGCG
GAGGTACTTCATCTTCTGGCGGACGAGGCCGCCGGACATGCAGATCTCCTCGCAGCGGAC
CACCACCACGCGCTGCCCGTTGAGCAGCTCCTTGGCGACGATCGACGCCAGGCGGCCGAG
CATGTGGTGGCGGGCGTCCACCACCACGCGCTTGGCGCACACGCCGGAGCCGGACACCAT
CTCGCCTCTTACCTGGCGGCGGCGGCGCAGCTACTAGGGTTTGGAGTTCGGGGGGTGGAG
GCGGAATGGAGAGCAGTGCGGCGCTTAGGGTTTCGTATTTATAGATCTCCGCGTTTAGGG
TGTCTTGCATGGGCCAGTTGCTGGGCCGCTCCCGTCCGGGCTGTAGTGTTAAATGGGCTA
GGCTTATTAGGTTTAGAGGCTTTACGAGTTTAGAAAAGTTTATTCTGCGCTGACGGGCTT
GCTGAAGGATTTTGTCTGACAAAGATATACTGTACGTTTGTGGGTAAAAAAAAATGCCAA
ATGTTTTAAATAAAGTACTGAAAATATATTATCTATGAAAATGAAACTGGTGACCTTCAA
AAAGACAATGTCATCCTAAATAAAAAATCAAATGTGTCGAGGGAGGAATTATTCGTACTC
CCTCCATCCATATATATATAGGGCCTAATGCATTTTTCGAGATTGCCTTTGACTATTGAT
AAGATTAATAGTATATGAATTATATAATGTGAAAATTATATCATTGAAAGCTCCTTTCAC
GTACGAATTTGAAGATATGCTTTGTGTAACTTGCATGCCATATATTATTGCTCTAACATA
TGATCAAAGTTAGTCTCGAAAAACGCATTAGACCCTATATATATGGAAAGAGGGAGTACA
AAGCTTTTTGTCGATGAGTTAAATGGCTGATAATAGTAAGAAAAACAAAGAGGCTGGTTC
AATTCTCTAAACTAAATTATTATTATTTTATATCATAGAAGATAAATTAATTAAGCTTAA
GTTTATAATTGTTCGATTGCGCTATTCTCGTCTGTGTGAACATAGCTTTGCGAACGATTT
CATGTTCCGCAAATTATGTTATTGTCTAACTAACTCCTAAAACACACATAGAAACATTGC
ACTTGCCGCAAAGATGAATCTATACAATTTTTTTTGTAGATCATAACCAAAAATAGAAGG
AAAAAACATGTATGAAAGCAGTTCAAAAACATGGGACAATGGTACTACGTAGCAATACTA
CTTTCTTGAAGTGGTGTAGATGTTATCCAGTACTGGATTTTTTTAAACAGTTCAAAACTA
ATGGGATAAACGCTGGAGTAGTACCTTTAGGGCTCACGAGAAAATGGGTGCAAGATATAA
AAGAACAACACAGAACCACATCAGTGCCTAGGTAGGGAAAAACATAAAAAAATAAAAACT
GAATAAATATAAGGCTTTCCAAAAATTCGAGTCACCGGTACAAAATTCATTCATATTCAC
ATCCGTACAAGTTATAACTGTTGGTGCCCAAAAATCCACGGTAAAATTAGTTTGGAGGTC
AGGTATACAACAAACATGCGACAACTTCCCCTCATGTCTGAAGAATCAACACAAGATCAG
TCTACTAGTCCGCCTCACTAGATATTGGGACGTTCAGGCACAAGTTAATGCACCATACTC
TTTACCAGCTATTTCAGCATAGAAGTTCCAATTTGGATCACTCTGTGTAATAAAAGGTTG
ACCAAATGGATTATTGCCAACGTAGCACTCAACATCATCTGCAAAAACGAGTTTCTCCAG
ATACATGCGAAGATCTCCATCAGGACCTGCTTATCGGAAATTGTAATTTATATGCATCAA
TAGGCTGTAGTAGTGTAACAGGTAACTACGTAAGTACATCAACATGAAGTGGTGAATGCA
TACCCAATGAATTGTCGTTCTGGTTAAGATAGCTGAACGGTTGAGGAAAAATGGCAGTGT
GTGGCTGCATAACATTGGCATGAAAATATGCATTATTCTAATATAGAAATGATACAGTTA
AACGAGACACTTAAACAAGACGCTGGTATATGGAAACAGCTGAGAAAATACCGGATTGCG
CAGAGCCTTGTAAGGAGAATCGTCCACAAGTAATGTATTGGAAGGTGAAAATTCTCCCTC
CTTCCAAGGAAGACCAGGTTCTTCCTTATTCCACAGTTTCCTCAATTCCTTCAGTACTAT
TGGTTTGTGCACGTTCTCCAGTGTGTTACGTCCAGTCATTGTGCATTTATCCCTGGCCTG
CCCATATGAAGGTCATAAAACATATTAGGACCAAAATTACATACAGTCGACCATGTCCAT
CTACCACAGGTTTGTTTCTGTTACTTACCCAAGAAAACAGTAGGTATGGTTTGAAATCAC
TCATGAGGATGTCAACAACAGAATCAACATTTTTCCTAGAAAAATGATAAATCACACATT
AGTAAACATGGAGCAATGAGGATAAAGTAAAACAAAATATGTGGATAGTAAATAGTACCG
TTTCCTTGAGGACCATACACCTAGCTCGAAATTTTTTATGCAGAAGTTGAGAAAATCATC
ACAGTAAGGCCTTCGGAAGACTGGTAGAAAGGTGTAGTACTATATTAATATCATCTGTCA
CAGTTCTATATCTGCATTTTCACAAACAATAATTATGGACAATTGTACAAGTAACTTTAC
CTAGTTTCCTTCGAACTTTTGCATCAGCCATGTGAGCATTGTGGAAATCTTCATTGATAT
CCGCAAGCAGGCCATTGAGATCTAGAATAAGAAGCTTTTTCTTCCGAATCCCTATCAAGG
AATCTCTTGGCGGGAAGGACATTCTAAGCTTTTCGCTGTATGCCTGAGCTAAACTTGAAG
GGCTTATCCGGTCATTGTTGTGTTTTGTTGATAAGCAAGTTCGTTCTTTCTCCTGCATTT
CATTTCTTTCAGTACTGGTATGATCCAAATAACTTCTTCCAAATCCATGCTCTAAATTCT
CATTGGCGTCTGATCCATACATGTTCATACTATGATGAACACCTTCCCTAAAGTTAGGAA
TTGCCCTTCCTAGCTCAAAGAAGTTTGCATCTTCATTGAATAGATACGACTGGTTCCTCT
GAAATCCATGATCTGAACTCCCCATGGTCCTTGATTCATAGATGTTCATACTATGATGAA
CACCTGCCCTAAAGTTAGGGTCTGCCCTTCCTCGCTGAAAGAAGTTTGCACCTTCATCGC
ATGGATACGAGTGGTTCATCTGAAATCCATGTTCTGAATTCCCCATGGAGCCTGATCCAT
AGATATTCATATAGTGATGAACACCTGCCCTGAAGTTAGGGTCTGCCCTTCCTGACTGAA
AGAAGTTTGCGCCCTCATCGAATGGATACGACTGGTTCCTCTGAAATCCATGTTCTGAAT
TCCTCATGGCGCCTGATCCATGGATGTTCATATTATGATGAACACCTGCCCTAAAGTTAG
GGTCTGCCCTTCCTAGCTGAAAGAAGTTTGCACCTTCACTGAATGGATACGACTGGTTCC
TCTGAAATCCATGCTCTGAATTCCCCATGGCGCCTGATCCATAGATGTTCATATTGTGAT
GAGCACCTGCCCTAAAGTTAGGGTCTGTCCTTCCAAGCTGAAAGAAGTTTGCACCTTCAT
CAAATGGATACAACCGGTTCCTCTGCAACCTATACTCTGAATTCCCGATGCCTCCTGATC
CATACATGTCCATACTATGATGAACACCTGCCCTTAAGTTAGGGTCTGCCCTTCTTAGCT
GAAAGAAATTTGCACCTTCACTGAATGGATGTGACCGGTTCCTCTGAAACCTATACTCTG
AATTCCCCATGCCTCCTAATCCATACATGTCCATACTATGATGAACACCTGCCCGTAAGT
TAGGGTCTGCCCTTCCTAGCTGAAAGAAGTTTCCACCTTCACTGAATGGATGTGACTGGT
TCCTCTGAAATTCATACTCTGAATTCCCTATGCCTCCTGATACATAGATGTTCCTACGGT
GATGAACATCTGCCCTGAAGTTAGGGTCTGTGTTTCCTGTCTGAAAGAAGTTCGCACCTT
CATTGAATGGATACGACTGGTTCTTCTGATTTTCAGATGGTAAGACCTTTTCTATTCCAG
CACTATTAAATGACGTACGAAGAATAGCTTCTCTCGTATGCTTACCAGACCCAAAATTCT
TGCGCTCTTCTGAGATGTTAGGCTGGGAAACAAGACCAGAAGGTATGGTAACATCTTCAC
TAACTGCATTCTGATAAACTTTTTCTTCAGTTGATGAATGTAAGCAGTCGGTCTTCACAT
CTGCATCAACTATAACTGTTTGAAGTGGCATCAGAGACACATTCCTGCTTGCCAGTTGGC
TGGAGTCAAGCACGCATGAACCCAAGGATGTTGCAACATTCTCAGTTTCTTTCTCTTTAA
GTGAACCAGGCAGAACTTCATCACGGTTCTTTTGAATGGTACTGTCTACATTCAAATTTC
CCCCATCTGTGATCTCTGCATTAACTACTGTGAATGAGTTTGTCAGGGATACCTCATCTG
GATTTTTCTCTAGCCTCAAACCCGTGCATTTAGGAGCTTCTGTGTGGTTCTCAGTAACCA
TCGACGTCAAACCGGAGGTACCAGTGCTAGTTGGCAAAGAAAGATGCTGTGAAGTGCTTG
TGTCATGAACATGACTACTGTTCTCTTTTCCTCTACTTCTATTCTTTTGCCTCTTCTCAT
CCTTCAAGCTGCTAGAGTTAAGAGAAGATCTGTTATTGTTTTCCTTCAATTCTTCCGAGA
TCCCTGCCAAGTCGGCATTCTTCCCGTCTTTGCATGCTGGATCTTCATTCTGAAAATCAA
TATTAACATTAGCATTTCAAGGGACTATTAAGTATCAACACTAGTACTTCCCGCTTCCTA
GTATGCTGCAATTACAACACAAGCAACTTACATCGGATTTCTTTAAGAACTTGCTCCTTG
CATCTTTGGTTTCTACTACAGAAATCTCACGAGCATGAGATTTGCTGCCAGCACTAGGAA
CATGTACTGACTCTTTATTTCCAGGCTGAAAATTCCTCTTCCTTGTCCCATCCGAGTTTA
CTGACTGCTTGGACGTAGTCTGCACTGAATTATCACCCAAATGTGCTTCTGAATTCCGGG
GTGAATCACCTTGAGTTGAAATAGCGGCTTCGTTGCCATTCTCCGGATTGCTAATAGCTG
CGTGATGTAGGCCTCCTTGAGCATCAGCTTGTGTACTGTCAGCAGTGTCTGCAAGTTAAG
AGCAATCGAATGAGCCTGTCCTTACACAACTACTATTATTAAATCTAAAATTCCCCAAGC
CAAGGTTGAAGCTTAAGTAAAAAAAGTAACACAACACAATTAAACAACCGACATGCCCTT
TTTGTCATGTGTTGTTTTGCATTATAAGATGTTAAGTTGGCCCAAAAAAGAGGGGCTCTC
ATGTCTTGCCACTTGCTTTTTACAACACGCCGTGTTAATCTGGGGTATCGCTGCTCCCGG
GCTCACTGATCCTAGCCAACATCTGTGAAGTCGTGTAACATTGTGTTTATGTCAGTAGGT
TTCTCGTTTTGGCTGATAACTGAAGGAGATGTTTAGCTGATCGCCAACTACAATACAACA
ACATAACAAGGAAAAAAAACAGAGAAACGGTAGAAACAGGAAGCCTATCCTACGAAACAG
GAAAGGAAAACAAGAAAAATAAAACAGCACGGTCGTCTCGCTACAGAAAAAAAAAGGCTT
GAGAAGCTTACACGGCTTCACAAATGTTGGCTGGCTTGTTCGAACTGATCGAATTACTCG
TCTCTATCTAGGGCAATGAGACCGGGAGCAGCAGCAATACCGCAGGCAGATTAACGCGGC
GGCTTGTGAAACGGAAACGAAGCTTTTCTGCGATTACCGCGACGGCAATGGTCGGACGCA
ACACGCAAGCACAAAAACCTCCTCCTATCGGCCGCGTACCTGTGACGGGAGCTCCCTTGC
ACGACGCGGCGCCGGCGGTGGCAGGGGCGCCCGGGGCTGCGGGGCCGTCCGGGGGCGGCG
AGGGCGGGCTCGCCGCCGGGGGCGGGGGGGCCCCCCCGAGGGAGGGGGGGGGGGGCGGGC
AGGGGAGGGGGGGGAGGGGGGGGGGGGGGACGGGAAGAGGG