morexGenes - Barley RNA-seq Database

Contig contig_44024
Source Contig contig_44024
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_44024 (10018 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_44024

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_59906	3	914 bp	MLOC_59906.2	Available	Available	LOC_Os07g47960.1, FRAME:-2, EVALUE:5e-55, 13107.m05123 protein basic helix-loop-helix domain containing protein, expressed
MLOC_59907	1	162 bp	None	Available	Available	None
CDS Structure of MLOC_59906

CDS Structure of MLOC_59907

Contig Sequence (10018 bp)

>contig_44024 10018 assembly3_WGSMorex_rbca.fasta
AGGGAGGGGAAGGGGGAGAGGGAGAGGGAGAGGGGGAGAGGGAGAGGGAGGGAGGGAGGG
AGAGGGAGAGGGAGAGAGGGTGGCAGAGGGAGTGGGAGTGAGCGAGGGGGGGAGGGGGAC
GGGGGGGGGGTTAACAACCTTTCGCTAAGACGCAAAGCAGTAGGATAGTACATTCTCTGT
CCACTAATGTAAGATGTTTTGGCAGTTCAATTTAAACTATCAAAACGATCTTTCATCAGT
GAACAGAGGTAGCTACCATCATATTGCAGAATAGTATGAACAGCTGAAAACGCGAGGATA
TGTTGGTCTAAAACCTAAAGGGCAGCAGCAGGGATGATGGCCCTTCTTAGCTTCTCGCCA
TCTCACATGCAAATTCTACACAAACCGTGTACCAAATAAAGAACACCTTGCCGGACTACC
TACAATTTCCATAGAATTACCATCATCATCACTCATCAACAGATAGTACAAGGTGAATTG
CTAAAGATTGAACTGGATGCATATATCATCGCAGCTCATCCGTTAGATCGAGAGAAGAGC
CATAAAACTTTGCAAAGGGCAGATCGATCGAGAAGAAAATGTGGGGGTGCTACTGATCCC
CTTGCTCCGCGCCGCAGTTGGTGATGGCCTGCTGCACCGCCCGCCTGATGACACCCTCAT
CCACACTCCCCGCCTGGTTCTGCAACATCATATCAATACAAGATAACCGAGCATCAGCAC
AGCTAATCACGATCCATGAGTCGGTCGCACCGTGTCGCTAGTCGCGACAGCGTCGAATTA
TTGACGAGATAATTGTAGGAGCATGGTTCAGACTATTTATGGTCAGCAGAGGTTGGTCTG
CTTTACAGTTCAGTTCGATCGCGGATGAGTTAATGATTGATGAGACATTGTCGCGTAGGA
GTATGTATGTAGGTGCGTACGTACCTCTCCTCCTCCGACGGCCTCGAGGCGGAACGTATC
GGCGCAAGACGCCGTGGCCTGGAGCACGGTGAGGCCCAGCTCCTCGAACGCCTCCAGCAC
GGCGACGAGCAACCCAGGGCAGCTCTTGTCGGAGGACACGTTCACGAGGAACCCATGCCC
TAGGGCTTCAACGCTCACCTGTGCAGATGCAATAATTGATTGAATCATGCATTAATCTTA
CATCATACTCCACTATACTATTACTATGTGCCACAGTGCTCTCCCGTTGATAGTACATAA
CCTAAGCTTCAGAACCGGATAACTCAGGTCCTCTGTATATATATATATACAGTATACACA
CACAGTGCAGTGATAGGTGTGTGCGCGTACCGTGGGGAAAGAGTTCTGCTTGCGCGAGTG
TGCGTCTTCCTCGCGTGCGATCTCCTGATTGAGCCTGGCGATCTTCTGCTTCAGCCCCTT
GATGTACTCCGACGCGTCCATGACTATGGAAGGATTGCTCAGCTGCACAACGATTTTAAA
TTTAAGAACATACATCAAGCTAATGGCAGCATAAGATCATCACACCAAGGGCAGGCGACA
CAGGAAAGCGAAAGAGGCGTTGGTTACCGCGTGGGAATGAGTGATGGAGCGCAGAATCTG
CATCTTCTCCTGTAGAGCAGCCGCCTTCTTGCGCTCCCTCGACATTATGTCCCTCTCTCT
GATTGTCTCTGCAGTTAATCCTCCACGTACTAATTCTATGAAGGTTCGCTTCAAATGGAG
AGAGAGAGAGAGAGGGGGGGAGAGAGGGAGAGAGAGCTGCTTCAAGGGATCAGGATGAAG
AAGCACCGGGCGCGCACGTCCCTTATATAGTGATCTACGGAGGTTGGCCGCTCACGTGAC
CTTATTGCGGTTCAGGGAATTGAATGGAAGATGGGATGACGAGGAGAGATTCGATTCTAG
CTAGGTTCAAAACTCAGTTTGGCTCTTCCTCCGGCTCTTCTTTCCTTTACATGCATATAT
GCCGCCGAGAAATGTAAAGTGTACCGTCAGTTGCTGCCCACTGCCCACTGTGTGTGTGTT
TACTCCTTGCATGCGGATGCATGTATACAACAGCTTTTTAAAAAATAAAATCATTTCTAA
AATAGATAACTTTCTGTGAATGATTCTACTGTTGGAGGCCGGTTATGCCACTGGTGATTT
AGCTATGCGGGAATTCCAGGGTGCTTGGCCATATAATTCGCTCCCAAGCTAAACTAATTT
GTTAGAGCATCTCCAACAGCCGCGTAACCGCGGCGCGCTATAAAAACATTTTGCAACTTC
AAAATAGCAAATTTTAACGCTTTGAAGAGCGCTGGCTCCAGCCGTCGTCGTAAAAAATTA
CGCGCGTGAGCTTCCAGCAGGCGCTGCAAAAAAAAAAAACGATGCGCGTACAACACAAAT
AACGTATGACACTCCAATTAAAACCAATTAAAATCAAATAGATAAAAAATAATCAACAAT
AACTGGTTCAATTTTTGACAAATAGTTTATCTTTAAATACGATAAATAGCTAGGATCATT
GCAAGGTCCTCCTCCTCTTTAATATCAAATTCTTCTTTGAAAGAATCATATGATGAACTC
ATCTATAATATTGAATTTAAACTAGTCTAAAAAAACTACAAAAAACATGCATCGAATTCA
TGTAAAAAAAGGTGAAGTTGAAGCAATGCATACCTTGCAAGCGTGTTGTCGAACACCTTG
TGGGCACCGAGCGATAGTGGGCAGCTGAACGTTGTTCATCGGAGGAATGGAGTGCGCGAG
GGGCGGCCACGGGTAGAGAGAGACGAAGGAAGCAGCGGCGGCGCGGGGATATGTCGGGGA
AGCGCCTTCAGGTCGACAGAGCAAACGGGGTGGCGCGGGCGGCGGCGCCAGCGCCTGGAT
TTAGTGGTGGGTGGAAGTCGCCCATGAGTCGTCGATGTCCAGAACGCGGTAGTGCGCGCT
TGAAATAAGCGGCGCGTGATACCGTTTCACCCTGTGAGCTCAGCCATTTATGTCGCGCGC
GCATTTTTTTCACATTGCCCAAAACGGCTACACATGCAAAAAAACTGTTTTTTTAACGTA
GCTGTTGAAGATGTTCTTATGCATCTGCCTTTATCCAGTACTGTTTAAGAGCATCTCTAG
CCGATCATTTATACTAAAACTACGAAAGCAGCTTACTATCTACTATTTGTTTTTATGGAA
ATTAGTATTCCCCGGCTAGCAAATCCCCTATCCTATAATTTTTTATTTCACAAACTATGA
AATCTATTGCTCACACCATTGTAACAAATTGATCGTTTCAACACAAACATAGAGAATTTA
AATGCATCACATCACAAACATAGAGATCTTGTAGTTACCCGTCCTCTGATTCCTCTTCGC
TTGACTCTCATTGATCTCCTCGACCTTATCATCCTGTTCCATCAATTGGTTATAGGGCAT
ATTCATTCTCATTCCCAATGTCATCGAGCCCAAATGTGTGGCTTGAATTCAATTCATTCA
TGAAAGCTTCGGCATCATTATTCATTTGCTCATTACAATACTAAAGCAAGAACCTAGCAA
TCAATATCAAACAACGCACCCATATACTAAGAAAATGCAAACAATAAATCGAAAAGAGGA
AAAAAAAACATTTGAGGCATTTCATTGAGCATGCCACCGCCGCTTCTTGCAGCTTCTGAA
TCCATCCTGTCCTCGACCACCAGCTACAGAGGGGTTGCATGTGTGGTAGCAGGAGGCGAT
GTAACACTTGACGGAGCCGTGCAAGTCAAGGGGGAAGTGAAAAGGTAGCAACATTCTTAT
TTTTCTCTGCCAGTGTTGTTGTGTCTACCACTGCCTTTTCCGTTGGTCGATGATTCCTAT
GAGCGTCGCCTGGTCGGTACATTGGTAGTGTCGGAGGGTTTTGCCTACGAGCGTCGTCGA
TGCTTTCCTATTGGTGAGCTTCGTCCCCTGACACCGCCTTTTCGGTGGTTGTGCCGCTGA
ATTTGTGGTTATTGGTGGGTCTCCGGCGCTAGTGTTGGTGTCCAAAGGGACAACCTACCT
ATTTTGCAGGTCATCGAGGAAGGGACGTCCGACGGCAGCGGGGTAGGCAGGTAACGCCAG
GGTGATAGGGAGAGGTGCTTGAGGTTTGGTCCACCGAGCATTTGCATACTAAATTTGTGG
GAGGGGGCAAGTTTGGGGGGTCGAAACTCAAATTTTGTAAATTTCTAGTTTAGGGGGTCT
TCTGCTTGGGCCCTCTTTGACCTAAATGTCGCTTTTACTCCTCAAATTTCAGTTTTAGGG
GATCTTCCATAGATGCTCTAAGTTTACACTCTGAGAAGGAGCGGTACTGTGGGAGGTGCT
TGTTCCTTGGGGGTAGTGTTTTGCAGAATTTTCAAGTAGAGGGCCACTTTCTTGGTCAAC
CCGACGATGGGATACTAAGGATTGAAGTTCCTATCACTCGCCATGTTAAATAGAATGTTA
GTTGACCTGATGCCCCTCTAATAGCCTTTTTGTTATGGTAATCTAGCTATTCAATTGTTA
TTTTGGCCCCGGTTTGGATGAAGGGTGGTGTAGCCCTGGGGTGTTGTATGTAATCAGCTT
TTGCTGCCTCTTTATTTCCATAAACATCTACTGTTAAGTACGCGTTAGCATTAGGTGGCA
CCTAGTTTGTTAAAGACTTGTTTTCCTTTTGCATGCACTGGATGATGATGTTCTTTTGTT
ATCTTCTGATGATGGAACAGAGCCAATGAGTTAATCATATGAAAAAAGAAAGATAGATAA
TACATACAAACACAGCATCTTCTAAAACACTGGAATCATGCAGCACTAAAACTAAAAAGT
AAGTTTCAAAACTAGGTTTTATTCATGAAGGGTTGTAGTGAAACCGCCCCACTAGCTATC
CACTCGAATGCATCCAAGGGTTAATTAAGGTGCAACAAAAATAATGGTGGAGATTTTGTC
CTCTTAAAACAATAGGTTTATTCTTCTGCTATGACTCTCTTAGTCGGGTTCCAATATCTC
TCAGTAATTAAGAGAAATGACACATAGACTCGGGTACATTGTATCCGCGATGAATTCAAC
AGATTTCACATTTCATATGCAGGTCCTTTTGGTGCCCGACGGTGCTTTTCCCCCAAGACG
TACGGGAAGGGGAAACCTTGGTGGAGGCTGGTTTGAACCCCTCCTCTCTTCTTTGGGCAG
TCGGGCCGGGAGAGCGATGCGCATGCATTAATCTAGTCGAAAACATTTTGGGGAAGCGCC
AGCCCCCATTTCGGAAAGGGAATTAAAGTAAAACCGAAAGTGGACAAGTTGGAAAGGTTG
GAATATGCCCCCGTGTACTGTACGTACGTTGTAGGCTTGCTGGCCCGTCCATGGCGGCAT
GCGTGGCACGGGCCGCGCGGCCCTTTCCCCTCGTCGGCGCACGGGTCGCGTGGCTCATTC
GCCGCGCGGGCGCCACCACTAACATGGCATGTACGTACGCCGCGCATACGTACACCCACG
CACCCGCACCCGCACCCGCACCCACGCGTACAGTCTGGTCGACGGCTCCGGCTCCGGCTC
CAACTCATCATTCTTCACTGGAGACACACATGCGCGCGTCTTATTTACGTCGGGATGGCG
CGCGCACGTTCGGTGGCGTGTAGGGTTGAGCTCCCCGGCCTCCGGCCGCGCGCGCCGCAT
GCCATGCCATCAGGTCGTCGGCGCGGCGCGGAGCGGCGCGCGGGCAACGATCGATCGAAG
GAGCAGCGACCTATGGTGGTGTGGGATGAGCGCGTACCAAGGACGAGGGAGAGCTCTCGA
TCGGCCGGAATTCCATCCGTGTATCCGGGGGAAGATCGGCCGGGGCTTGCATGCGGTGTC
GAACGCCGATCGATCGGGATGCGTTGTGGTTTCTTTAATCCGAGAGGGACGTACGTACGC
GTCTTCTTGTTCTTGGTACTGATTGACTGGGTCGTGGTCTTGGACTGGTGGTGGAGGACC
GAGATTTATTGACCTAGTACGTACGGCCGCGGTCTCCGTAGGGAATTGATCAATGACCAG
CTGACAACGGCATGCATTGCATAGGATTGGTGTTTGTTGAGCCCCAAATTAAAACCTAAT
TAATACTCCCCCTTTCTTAAATAATTATATTATACTATAACTATTTTGGTACAGAGAGAC
TACTCCCTCCGTCCAAGTGTATAGGGCATGCGCGTAGTTCTAGGTCATTAATTTACTATT
TAAATATGTATTATATGTAACAAATAATATATCATTATATTCATGTGAAGATGTAGTTTC
TGAATATATAATTTTTATCACATATAATATATATTTAGCTAGTTAAATTGATAACCTAGA
ACTACGCGCATGTCCTATACACTTGGACGGAGGTAGTACTTATTAGAGGGCGGTCTTTGA
CGTATGAACAGACCCAACTTACAAGTACGCAACAACTGTGTTGTCAGGTTTTCGCCCCGT
AGCGAATGTTTCAAGACGAGCATTTGCAATGGGTTTTATGGCGATGAGTTGCCAACTCGC
TTTCCTTCTTTCCCTTCTCCTTCTCCATGCTTGTATGAGGCCGCTGAACTTTGTATTTCT
ATTATAAGAAATTAATTGAAAGAGGGATGCCCGGTTGGGGAAAAGAAAAACTAGACGCAC
ATTTGTATTTGAATCAGGCTGTCTGGCTTTGTTTTCGACCAGATGTTGAGATCACGGGCT
CCTGCCAAAGGTGGCACCGTGTCCGGTAATAACCATCTTGCCTCTATATGCTCCTCTATA
TGGATGAGCTGGTGTCCGGACGTGGTCAGTTCGACCGATCGATCGATAAGCGTGCGCCCC
CGTCCAATCCCCAGTGGGAGGCGTCCATCGATCGATCGGCCTCAGCGGTCACAGCTAGGC
GTGTACTTGGACCTCGGTCACATGACCGTGTCGACGCATGCCTACGCCATGGGCGCGGGG
CGGGGGGGAGCAGAGCTCGCCGTACGCCCGCGCGCGCCCGTCCATGCACGCGCGCGCTCT
CGTGACCGCCAGGGCGCTCCGCCATTGGCCGCCCGCCCGGAACCATGCATGCATGCGGCC
TCTGCCCCGGCGTACTCCCAATCCAGCGCCCTAGCTCCGCGGATCACATGCATGCATGCG
CACTGGCTGACACGCGCTATCGAGGACGGACGGCGGATTCCCTTGCACGCGGATCCTATG
AAGGCACGCCGCTCGCCGGAAACCCGGGTGGGAGGGGAATGTGACCCTGCTCTGGGCGCT
GCATGCGGCTGCCGTGGCCCATGAGCAGAGCGGCCAGAAACCAGCACGGGAAACTACATT
CCATGCCCGTGGCATCCCATCAGCCCTGCGGTGTTTTGGAGGCATGTTTCCGTTCGCTCT
GTCCCCGGTGGCAGCGACATTCCGCGCCCGCACTCCCCTATCTATTTTACTGGGGAGCTC
GGCCTCGGCCTCGGCCTCGGCTGGAGGCCGGCCCACGTGAGAGTGAGACCGACGGTATGC
GCATGCGCCACCGCCCCGGCCTGCCGTGGACGTACGCGCCGCTGCGGTTACGTTTTGGCC
GCATGGAATTTTGACAAACATCTCGTGAGCGCGGGCTGTCCTGGGCTTGTTCTATGTGCC
TGCGCGAGCGAGCAAAGTACTCGCATGCATAAATGCGTTTGGGCAGTATCCATGTAAAAT
CTGACATTTTGTCTTGCATGCATGAAATGCGCAGTCCTTCGTCTCTTCTTCGCTATATTT
TGCTTTTAGTTTTTTCTAAATAGGTCCAGCATCTCCAACTGGCACGCTAAAAAAATTATA
CAATGTTAAAATAATGTTTTTCAGTGTGTTGGAGGGTGTTTGCTTCAACAGACGTCACAA
AACATGATGCCCAATTCGACGGCCCCACCTGCAGCGACCAGCACGTATAATTAGACGCCC
CTAATACACAGCTTCTGCATTTTTTATGCGCGTTGTATTTTACAGCTTCTATCGGAGCAC
TGTTTTTTTGTCTCGGACACATAAAAGCACCAATTTTTAACGTGTGAGATTTTTTTTGAG
CGCCTGTTGAAGATGCTTTAAGAAGACGACTACTACTACTAAATGTGTGCATGCAATTCA
TGTTGACATTAGATAGGACGTCAATTGCAAGTCAATACTACTATATGCTTTCTGAGTTTG
TAAGGCTTGTGCATATCCGTAGATTTATAATTTGACCAACATAAGATGAGTTATATAGTA
TAAAAGTTATACCGTTAGAAAGTACTTCCTCCGTCCCAAAATAAATGATTTAAAAGTGAC
TCAACTTTGTATTAAAGTTAATGCAAAGTTGAATCATTTTTGAGTCACTTATTTTGAAAC
GGAGGGAGTATATGATTTGAAGTTTTTAATAATATTTTTTTGTGATACATAACTTGTATT
AGGATGGTCTATTTCTCAATCTGGATGTACGCACAAGTGTTAAACCATTAAGGAGGTAGT
ATGTAGGGCAATTGTGCATTAATTATATGGTTAACATTAACATCGTCATTTTGTACAATG
CAAACATGTGGAGCGCTCACCATTGAAGTAATCTACATTGTTGGGTTGAGATGGTTTGTT
GGATCAGATTCGTGTCCGCCCCTTTAGGTTGTTTATTTATTTATTTATGTATTGGGATAC
AGATATATATGTGGATTTAAACGAAGAAAACAGATAATAAAAGGAAAACATACTATTTTT
GTACCTAGGATATAAGTTTGGTCTCTGAGTTTTAGTACCACACATTATTCACCCAACTGA
ATAATGTCTAACCGTTCTGAACTAATTATTCACCCAACTGTCCTATTGAAAGTCATTTTT
ATCATGACATGCTGGCGATTTCGCACATGTGGCAGCTAGCGAACACACAAAAAAATATAG
GGAAATATAAAAAGGAAATAACTCAGCTAGTTTGATTAAAAAATCAAGCATGAAACAAAT
TAATCACGTAATGGGGAAGATTCAAGTTACTTAAGGAAAGCCAAAAAGTTTCCACAATTC
TTCCGAAGGGAGTTTTGCAAGAAAGGAAATAATTTTAAGGACATTGTCAAAACACCATGC
ACTTTAGAAACTTAGAGAACATTATATAAAAGTAACTAATAAATAAAGGAAGCATCTCTA
AAAGAAAAGAAAAAATATTTTGTAATTTCTCGATTGCATGGAGTATTTCATATTGTTATA
CATTTAAAATATGTTAAATTTTTCTTAGATGTTGTATTTTTAAAATTCCTTATTTTTTCA
TTTAGTTGTGCTGATAGGGTTGCCTGCTGTGCCAAGTCGTCGACAAGACATATCAAAACC
GCTTCTAATCAGGCAAGAGGCCTAATCTAGGAGGCTTTCATACTTAACCAAAAGTTTCTG
AATGTCACTTTACTTTTCAAAAGAAAATAAGAACGCATAGGATTGAAAGGATTGTACTAA
GACTCACAATAGGTAGAGCCTAGGTTGGTTAGGCCTTGGACTATATATGGCTTGTGGGTA
CAATTTCAACCGAATATAAATTCAAGCATTTGGTCCTTTCTTCGCATGTTCTTCAAATAT
TTGCATGATATTAATTAGATGGGATAATAGATAATGGCACGTTACTCTCCTTATGATTTC
ATACTAGTATCTGACCCAAGCTAGACATTATTAGCAAACGGATCTGTGTGTTCATCATAA
TTGAATATCACACGACTAGTTGAGCAATAACAGTAGTCATCTCCGGCTCTCACACTTCAA
TATCACAACAAGTATCATGTAGTGACACGTAAGCAATATGATGATGTGATACCATGTTAT
GATTTTTGTTCAAAAAGGAGGTTAAACCCCCGGCCTCCACATGTATCATAAAACATAGAA
TTAGAAAGGTAACTGCAAATATATATTGTACTCTATTTCACATTGTGATTCTTGAAACAA
ATAAAAAAGTTGGCACTATGAAATTGTGCAATGGGAGGTAGCACTAGTAGAAAACAGGGC
TTTGGTCCAGGCCTGAAATCCCATTAATCTCAGTTCACTCATGAACCGGGACCCATAGGG
CATCGGTCCCGGCTCGTGAGGCCAGGGCGCCGGTCGGGCCTTGTGGGCCATTGGTCCCGG
TTCGTGTGACCCCTTTGGTCCCGGTTCCAGACATGAACCGGGACCAATGGGCCTCGCT