Contig Data
morexGenes
Links



Map Locations of contig_43998 (4049 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_43998

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_59883 1 536 bp MLOC_59883.1 Available Available LOC_Os06g12960.1, FRAME:+2, EVALUE:1e-13, 13106.m01426 protein expressed protein





CDS Structure of MLOC_59883






Contig Sequence (4049 bp)

>contig_43998 4049 assembly3_WGSMorex_rbca.fasta
ACAGAACCGTTCCGCCTGCCCACGCCTACGCGCGAGGCGCTAGGTCTGTGGCCTCACGGG
CCGGTCGGCCGAGTAGTGAGTAGAAGACCGGGAGGTGACAGCGCCAGAGCCAGGCGGCCG
GCGGGAGGCCGGCCTCCGCCGGCGATGACCAGTCCCTCATGGACGATGGTCTCGATCAGG
TATAGTACCTTCTTGGTCATTACTGCCACATCTTCATGTTTCGCTGTTCATCGATGGCGG
TTCCTTTGCTTCTGTGTCATGCATGTTCTTCCGCGTGATGGTCATTGATCAACCAACAGT
ACTTTGCATGTACAACCTTTTCCTTTGCTCTGTGGTCTCCCCCTGTTCGCTGGTTGATTC
CAGCTCTTCACTAATCGCTACCACTACTGCCTCATCATTAATCTGAACTAGTGCATGTGT
GCAATTGATCAAGACATGTCATTACTAAGTCTCTAAAACGTTGGTAGTATCTGACAAAAT
AAGGAAGGCGATTTTGCTCACACCGTTTGTTCTTCAGAAATTTGTATGTGTGTCACTTCC
AATTTTGAAATGAGTACTTAGCCCTTATCCAAACTCCAATATGAAAAGAGGTTTTCCTTG
ATTGTGGCATAAGAGTAGGTAACTGCCTAGTTAGTTAACCTGCTGATGCTTGCAGTTTGC
TGTTAACTTGGGGTAGCTTTGACCATAAGACCACTTGCACTTGTTATTTTTTTTGTTCAG
TTGGCCACCCTCCCAAATTTTATACCTTACTAGTACTACTTACTTATGAGTTAGTATGAG
TTATGACACAACAGTACCTAACCGCCCAACCATTTTTGATTTACTAAATAAAGATATCAT
ACATTAGACGATCATGACACAATGATAGCATGAATAATGTACTCTAAACATGATATGATA
GCTCCTTGTACATATAATGAGCATGTTATTCCCACTCAAAACTAAACTATACTTTAGGCC
ACATCTTGCTTTGCTCACACCACATGGAAACGGCAGCGATGGATACCTAAAAATTTCTGC
CGCCGCCCAAACAAAATCCTATAAGGTTGACATTCTCCAATGGAAATGCCAGATACATGA
GGAATATGGCGCCTAACAACTACTCGTAGTGGACAAGGAATCATTCCCCCATTTATTCTC
TCAAAACATATGGGAATCGTCACTCGTTTAATCTTTAAAACTAAGTACAACATGGCAAAG
TGGCATGTACCATGTAGTACTAATTAGTGATTACTCTGGGCATTAGATCCTTAAACTCAG
TACTACAACATGGCAAATTGGCATGTTCTGATTACTCTGCTGCCGCCCATCGTTTAAATT
TGGCATTATATCCTTAAACTTAGTACTACACCATGGCAAATTGACATGTTCTGATTACTC
TGCTGCCGCCCATCCTATACATTGCAGTTGGAGCGCCAGGACAGGGACGGCCACCCGAGC
AGCTCGACAAAAACGTCGAGGCACCGCCAGTGGCGCCCTTCTCTGCACAGCATCGCCGAA
GTCAGCAGCTGATGCGGCCGACGACGCATGGCCTGTAGCCCAAGTTCATCTCATCAGATG
GTCGCCACTTGCTAGATTCAAGGTCAACAGCTCGACGCCGGAAGAGGAGCATTGTCTACA
AATTACCGGTTTTAACTCATGTTTTTAGTGAGATTAAGGTTGGTGCCTCTTGCATCTCAG
TGTTGGGTTGGGACAAAAGAGAAAGTTTGAGCTAGCAGTGTGGTGTTCGGTGTAGTAGTG
GTAGTAGTATATTCAGGTATGATGCAAAGTACGTATCTTTGCAGGTGGGTTTTGAGGATC
TTGCTGTTGCTGTGTACTGTAATGTGTTGTTGTTGATGGTGGTGGTGGCCGAATTCGCAA
TCATAGGCTCGCTGCATATTTGTTGCAATCATAAGGCCTCTGCAGTGATATGATATATAC
TCGGAGCTGGAATCCTCACTTTCATGTGTTGGATGCAAAGCACTCCTACATGTATCCGAT
TGTTAGTAGTATTGTTTTGTGGAGGTGGAGTGGGTGGGCCGAAAGATCCTCGATCAGGCG
CGCGCACACCTGAACTGAATGAACGTGGGTTACGATGTATACACTCCATGAGTAATTGTG
GTAGTACTATCTGCTACTGACTGATTTAATTTTGGGGAGATGGGATTGGTGCCTAACTGA
TTTCAGACAGCGGATTGTGATGATGTCCTAGCTAGCTTAGCATCCTGTGCAGGAGTAAGA
GACGGCCACTGGTGCTCGCCACGTTGACCTACATAGGCAAAGTGGTTTTCCACTTTTCAC
TGACGGATGATGAACACCGTTGTAATTGTTTTCAGGCGCACTTGTCTGAACCGGGAAAGC
AGGCGGGCCTTCTCTTCTCCTTCCCGCTCTGCCGCAGCCTGCAGAGCCACAGCCACGCCG
AGGATGCGCCGGACGGCCGCACCCATGCCGTTCCAGTGCGTTCGTGGGGATGCACCACCG
GCTGACGGCTCCACTGCTTCCACATGTTCGTCTGTGTGTGATCCTCCTCGTCCCCGCCAA
GTACGTTCCCATACGGTTGCAGCCTTTTTTTGGGCGTCGATCGTGCACGCTGCGGTGTGG
CCGTCGCTGTTCCGGGCATTTGGTTTGGTTCTTTTGATGATTGACGTGCGTGCCTTTGGC
CGAAAGGAGCCCAGGCGCACGTACGCCGCCCGCATGCATGATTTGACGTTGGTGAGCGGC
ACGAACCGGGACGGGTGAGCAAAAGTGGCCATGGCGTAGGGCCGTCGTCTCGAATGCTGG
ATTGCCTCTGTGTCTCTGCTTTTTCGTTTCGTTTCGTGGTTTGCAATGGAAAGGAGGTAC
TGGTACTAGCGCATGCGCCCAGCGCGCACTCGCGCGTGGCAGTTGACAAAGCTGTGTCAC
TTCATGGGCATATGCGGTTCATCTTAGCCAGTCGAATGGTTACCGTGCGAGGTGCTCTTG
GGGGGCAACAGAGTCAACTCATTGCTGCAGAAACAACCTATTTCCCAACTGAAGCTTTCT
TGACTAAACCAAACACTTAGAGCTCCTGATGGTAATGGCTACCCATTACACGCATACCAG
CAGGTATTTACCCATTAGGCCTAGTTTGGTACTAGGGTTTTTGAGAAGATTGGTGGGGAT
AATCCCCACAGGGAGTGAGGATTGAGTGAAACCCCAACCTTCACCCAATCCCTTCAAATC
CCCATTTATCCTCGATCCACTAGGTAGGGGTAGTGTATTGTGTATTGAAAAAAAGTACTA
AAATTTAGGGATTTGTGGGGAAATGTGGGGATGAAACATGTCAAATACACTAAAATCAAA
TGGTGTTATGGGATATGTGGTGATTTAGGGGTTTGATCGGGATAATCCCCACTAATTTCT
TAAAATACACTAGTACCAAACAAGGTCTTAGGATGAGGCTATGGAAAAAAAATCTTCATC
CATGGGTAAAAAGTATGCACCCGTTGGGTATTGCGGGTGCGGGCATGGTACATCAAAATC
CATACCCGCGTACCCACGCACCCGGTCTGTGAACCAAGGTAATTCTAAAAGAAAAGTCTC
AAATAAATCTATTAGTCCACGGAGACGCAGTCACGCGCCGCCTGTAGCCTCCTCGTATCG
TTGGTAGTCGTAATTAACGCTGGAGGCTGTACTTCTCGACTCCCACGCCCTCGTTTCCTC
TCCNNNNNNCCGATCTCCTCAATCACCGCCCTGCGCCGCACCCTGCCTTTTCTTCCTCTC
ATCTCATCTTCTCTTCACCTCACCGTTTCCTCAATCTCCTCCTCACAAGTCACGATCTCA
CCTCACCGCCCCGTCGATTCCGACGAGCGGCATGGAGAATTGAAGCAATTTAGTGTGATA
GACTTAGTTATATCTTATATTCCCTGTCATACGAACCTTTATTGTAAACTATAATCATTA
AATTATGAACTTCTAAAGTTGATTCTGGCATGCCATGTGATTGTTTTGCACATGTATTGG
CCAAAGTTAGAACTATATATATTTGTTATGCTTCTGTGCACCTTATGTTGGGTTGCAGCC
TCTGCATTAATGTTATTTTCGAATTACAT