morexGenes - Barley RNA-seq Database

Contig contig_43963
Source Contig contig_43963
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_43963 (9989 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_43963

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_59844	3	1572 bp	AK372135	Available	Available	None
MLOC_59842	1	1717 bp	MLOC_59842.1	Available	Available	LOC_Os02g51610.2, FRAME:+1, EVALUE:0.0, 13102.m05873 protein CRAL/TRIO domain containing protein, expressed
MLOC_59843	1	1999 bp	MLOC_59843.1	Available	Available	LOC_Os02g51600.1, FRAME:+2, EVALUE:0.0, 13102.m05871 protein endonuclease/exonuclease/phosphatase family domain containing protein, expressed
CDS Structure of MLOC_59844

CDS Structure of MLOC_59842

CDS Structure of MLOC_59843

Contig Sequence (9989 bp)

>contig_43963 9989 assembly3_WGSMorex_rbca.fasta
TGTGGGTGTGGGTGTGGGTGGTGGGGAATATATATGATTGGCTATGAGTTTATCATTGCA
AATGGGTGCAAACTAGCATAACTGTAATCTTTAAGCGTAGTTACGTGATCACTTGTGTTG
TGCAGATCTGCTAGATTTTTTTTTTATCTTCATCATACTGTTTCTCATATCATCTAAATA
CAGGCATTCTCTTTGGCCTAACTTGATGCAACTCAGTTTACAGTTCTTACAAGCAATTTC
TGTTGTTTTATGATAGGGAATAGCAAAACAGAATTATGAGCTCAGGGAGTGGTGCAGTTA
ATGGCCATGCGAAAGAAGCAGCATTATATGAGCAGCAGCTGTCAAAGGTGATCCAGTATC
TCCTGGGTTGAGTATTTTGCTTAGATACAACTCATTATTCTTTACCCTGTTGTGCGCGGA
TACAGTTTTTATTTCTCATATTTATATCCTTCCTTGTTAGATTGGTGAAGTTAGAGCTGC
TCTAGGACAACTATCTGGAAAATCTGCACTGTATTGCTCAGATGGTTCAATTGCGAGGTA
CCTGATAGCAAGGAACTGGGATGTGAGGAAGGCTACCAAAATGCTTACAAAAACCTTGAA
ATGGCGTTCAGAGTATAAGCCAGATGAGATACGTTGGGTGAGCCGTCCCCACCTTTTGAC
TTAAGCAAACCTATATTTCTCCAAAGAAATAGCATGCCATGTATCCATATGGTACAAGTG
ATTCGCCTTGTAACGTACTGGATCTTTGTAGTATGCTTTGTGAAACAGCCGAGTAAATGA
TGCATTATTGTAGTACGTCTGATGGCTTAGTATTTGACAAACATTATTAATTTCAATTTC
GTGATATAGGATGAGATATCGGGTGAAGCCATGACTGGAAAAATTTACCGAAGTGATCAT
TTTGACAAGAGTGGACGGAGTATTCTTGTCATGAGACCTGGATGCCAGGTTTAATGATGC
CCTTCTTTTTTATTGTATCAAAATGTGCATATGTATGCACATTAGATTGTGTCATTTTTT
CATTCTCATTTTGGTGACTCATTTTCAGAATACCAAGAAGTCCAAAGGACAGATCAGGTA
TTTGGTATACTGTATGGAGAATGCAATTCTAAATCTTCCAGCTGGACAGGATCAGATGGT
TTGGCTCATTGATTTTGCTGGCTTCAGCTTGCCTAATGTATCACTTCTAGTGACAAAGTT
AACAGCGGATGTCCTACAAGGTCATTATCCTGAAAGATTGGGTGTGGCAATTCTTTATAA
CGCTCCCAAGTTTTTTGAGTCTTTCTGGAAGGTATGATTTGTAAAAGCTTTCAGCATCTT
ATTTTTATCTATTTAGCCGCAGTTTGCGGTTGCTAAACTGTGTTGTGCTAACCTTATTTT
ATAATCTGCTGTGGTAAAATACACATGAAAGCAGAAAAATAGGCAAAAGCTGGTTGGAAA
AGTTAGGTTATCATAATATACCTCAATGTCTCAGAAACATAGGGATGTGATGTTTTCCAT
ATCTAGTGCCTAAGCATATCTTTGTTCTCCTCTTTGCGTGTAGACTTCCAATATAAGACA
TCACGGTTGGTTATAAACTTAAAAACTTCTTCTTAAAATCAGAACACCTCGTATTTGTTT
TCTTCATGTTCTCTTTTTGGTCTTGTGGAGTTTCTGTCAGTGAGTAACAATTATAGCATA
TTAGCATATCAAAGGAAATGGAGCATCCAGTGTTATTTATTTATTTTTATCGTTACCTGT
TTCCGAAACTAAGTTCTAGATCTGAATGCAGATGGCAAGTCCCCTTCTTGAGCCAAAGAC
GAAAAATAAGGTCAAATTTGTATACTCAGATAGACCTGAAACTGACAAGATAATGGAAGA
CCTTTTCAATATGGACGAGTTAGAATGCGCATTTGGCGGTAGAAACCCGGCCACTTTTAA
CATAAATGATTATGCTGCAAGGATGAGAGAAGATGATAAAAAGATGCCATTATTCTGGAG
CCCCGAGAATTCGGCTCTTGCCACTGAGCCATATCGCATGAAGAACCACGGGTCTCAACA
AGGTGACTCGGGTTTGAAGACTGAAGAGACTGCATCTGACATGATTGGGGAAACAGAGGC
CGCATCTGAAAAGAGTGGAGAAACAGACACTGGATCGGAGAAGGAAGATACCGAGGCTGC
ATCTGAGGAGAGGGAAGAGACCGAGACTTCATCGGAGAAGATGGTAGAAACTGCGACTGA
ATCTGTAAAGAAGGAAGAAACTGATACTGTTTCTGAAAAGAAAGGAGAAACAGAGACTGA
GTCTGAAAAGAAAGAAGAAACAGAGACCGAATCAAGCACCGTAAAATCGACAAGCTCGCG
AGGGGAAGGTAGTGCATCAGCAGAGAAAAGTGGCAGTTCATCTGATCCGTGAAGTTATCA
GGATGAAAAGTACGTCTCAGATGTTGATATGAGCTCCCACCACAGTGAATTCCCACCAAC
AGATGAACATTAAAAGTGATAACAACCCTTTTAACACACAACAAAGGGGAAGCTGCCTCA
CTTATTTTGTAGTCGGTGCCCTTGTCACCTTGTTCGAAGGACCTTTTGGCGACAAATGAA
CGTATCAAACGGTAACGATGATAAAGTACTTTGCTACCCAGGGTTTTTGTACGCCTGTTG
CTCCTTGGAATCTATTGGAATGTATGATATTTCCTGCCCTTTTTAGTAAATCTGAATATC
GGCTTTCTGCCCTTTTCTGCACATCAGAGTTGATGTTTACTTCGCATTGACCGCCTCCTG
TCGTTTTTACTCTGCTTTTGACTGATAAAAATACTAGTAATTTCTACTGTTATTTACCCC
TCAAGGAGTACCAGCTAGTGTCAAAACTCAAGGAGTTGGCAACAACTTGTATATCTGCTA
GAAGCCACCATTTACATTTCAGTCAGCAAGAAAGAGTGCTAGGCATGAAAGTTGAAAAAC
ATTTCAGCCCCACTCTCACTAGAGACATTTCTGATCCTTGTAACCTATAGAACAAGTATA
GACAAAAGAGAACCACTATAACAGGTCAAAAGTCATAGAAGCTGTGTCTCTGCGGTATCG
GCAACGGGGACTCGCAGTGGATCCTGGAGTCGAGGGTGGAGTAGCCCTTCCTGATCCTGC
TCCCGTTGTCGACGTCGGCCTCGACCACAAAGACGCTGCAGACGGGCCGGTGGTCGGAGA
ACCGGTGCTCTCCTCTGATGTACTGCAGCTGCTCTATCCCCTTGCCGTGCCACAGTATCC
GGTCGCACCTGCATCGACATGGAGGTAACCTTACTGTCAGAGTTTGGCAAAAGACCTGAA
ACCTCCATGGTTCAGGTCCAGCAGTGGCCATTCTTTTTTCTGCCGGTGACTACCATGAGG
GTGTTCTCCTCTTCCTCTTGGACTTGGTGGTCTCGCCGGCGTAGGTGTCGGAGTTGAGCT
TGTACTTGTAAGTCGGCGCGAAGTAGATCTTGCCCTCCTTCCACCCCTTGAACACCCTCC
CTGCTTGCCTCTCGATCATCAGCTGCCCAGGGATACAAAGGTTTCTTGGTGTCAGCCAGC
AGAGTTTGCTTTGGTTTTTGGCTGCTGCTGCCATGCACTGTAGCATATCTGAAAAATGCA
GTTCACCATTCTGATTGATACCTGGTCGTTCTCCAGCAGGGTGTCCCAGTCGTTCTGCTC
CAGCAGCGCCCTGGTCTCGTCGTAGGTCAGCGCCACGCGGTAGTTCAGGTCCCCGAGCCA
TATGATCCGGCTGCATTTTCACAGATGAAATCAACATCAGCAAGCACAGACAGAGGCTAT
GATTTTGTTGTGTGGGTGGGTGATGGGGTTGGCTTACTCGTGGTCGATGATCTTCTCGGG
GATGCGCTGGCCGGGAACCTTGCAGATGCGGGGGAACTGGGTGCTCTTGAGGATCTCGGC
GACGTCGGAGTTGCGGCGGACCTCGTCGCCGTCCTTCTCGCCGGAGGCCAGGTGGCTGCA
CACGAAGCACACGCTGGTCTGGTGCAGGGTCATGCTCATGGCGATGCAGCCCTTGTTGCC
GAGGCGGCCCATGATGCCCCGCCCCACGGAGTCCACCCGGAGGTGGCCGATGTTCTGCAC
CAGCTCCCGCCGCACCCACACCGACAGGAAGATGCCCACCATCTGCTTGCTGGCGATCAG
GCAGTAGCTCATGCCGCCCCCGCCGACGCCGCCGGCCTCGAGCCCCGCGGGCGGCGTCGT
CATCGCCGCCGACAAGGAGGAGGAGGAGGAGGGGTAGTCCGGTTCGTCGGCGCCGGACGT
GGAGGCCTCGACGCGGTAGATGAAGTCCCGCATCTCCCTGGCGCGGCGGTGCATGGTGGA
GGGGTCGGCCATGCAGGTGCAGGTCTTGACGAGCGCGCTGTTGACGCGGTAGTTCTTGCT
GAGGGCCTTGAGGGACGGCTTGTGGAAGAGGAGCACGCCGCCGCTGGAGGACTTGGGGAT
GGCCGGGCGGGTCGACCGGGAGGAGGACGCCACGGACTCCGTCGGCGACAGCTCGTCGCC
GGAGGACGGCTGCTCCTGCTGCGTCTGCGTCTGCTGCTGGTGCTGCTGCTGCTGGGGCTT
GTTCAGCGCCTGGTAGATGAGCGCCAGCCATTTCGCCGCCGGCTCGTTGTCCTCCACCAC
CAGCACGTTGCCCGCGTTCAGCGGCACGATCTCCTGGAACCTGCGCCCGTATAAGATCAT
AACTTGATCGGAAAAAATGTGCAGCATCGATCGTTATTGTCGATCATGTGAAAAACTGCA
GTGAGAATCTGTACTGTACGTACCCTAGGACGTATATGTCAGGTAGCCCTTCTATCTGCA
GAAAATCTTCTAGGTTAAGGCTGCTGTTAGGGGGCCTCCCGCCCACGTTCCACGTGCCCA
CGAACACCCTGCGACGGCAAAGAACACAGCAATGCCGTCAACCTGACTGACAAGAATGTC
AACCTCTTCTCTTTCGATCCAACAAAATCAATCAGACGAGGGCTGAAGATCGTGGTGTCT
TGTTTGTTTTACCTGTACTCCCGTGTGTCGACGTTCTGCCTGTTGGGCGAGTCCAGGCAG
CTGAGGGTCAGGCTCTCGATTCGCGACGCGCAATGCCGATCTGACATGACACGATGTGAT
CCATGGATCACGACGAGCGTACACACACACACACGCATTTCTCCCCCAAAACAAACGACG
ACGAGAGCTCACCTGAGACGCTCTTGCGGACGGTGGGGGTCGCGTCGAGGAACTCCGCCG
CCGCGGCGTCCGCCCTCTCGCCGCATTTCTCTTCCAAATCTGCCATGGCAAAGGAAACCG
CGCGCCCGTCAGAAACATAGGAGAACGATGACCGTCGAAAAAACGATGACGGCGAAGGCG
ACGGCGACGCACGCACCGAAGAGGAAGTCCCGGTCCCGGCGGGAGGGCGGGCGCTTGTCG
GAGGTGCCGGCGCCGGCGCCGCTGCGGCCCTTCTTGCGGAAGAATGTTGGACATGAAAGG
ACTTCTCTTCTTTGCCCATTCTTGGCGAGCTCGTCGGCGGAGGCGGGCTTGGGGATGTCG
CGGGGGACGGCATTGCTGCTGAGGCTGTGGTGGTGGTGGTGGTGGTGCTGGTGGTGGGTT
GACATTCAGCCGCTGGCGGTCGCGGTCGCGGTCGCGGTAAAAAGGAGGGGACGGCGTGAT
CGTGATGCATGGACCCTCATCCGGGACGGGCGCCTCGTCTGTCTCTGTCTGTCTGTCGTG
AGAGGAAGCTCCTTGTTTCTCTCTGCTCTTCGTCCCCTCTCCACGGCCCCCGGCAGGCAA
GGCGAGAGCGAAATGTGGAGTGGTGGGCGCAGGAAACAAAGCGGGGGTGAGAATGGGTGG
CGGGGAGGGAATTGTGCTTGCTTCAAAAATGAATGAACGGGCGCCTGGTATTCAGCTATA
GCTTATAGGTCGACGCACCCCTTTTGGTTCCTTCCCTTTTTTACAAGAGAACTTCCGTTC
TATTCATCATTAAAAATGACATTGCAACAGTAATAATTAAAAAAAATCCCTCTGTTCGCA
AATATAAGATGTTCTAATTTTATTTTTTCTAAATCAGATGTATATATACACATTTTAGTG
CGTTTCTTCACCTATTTCAATACGTTTGTTGTTCACATTGAAATATCCTAAACGTCCTAC
ATTTATAAACAGAGGGAGTACATCTAGATTGACAGACCATCTAGCGACGACTACAAGCGT
TGAAGTGAGCCGAAGGCGCGCCGTCATCATCACCCCTTCCCCGTCGGAGCTGGAAAAAAC
TTGTTGTAGTAGCTAAGACCTCATAAAACCAACGCACCAGAACAGCGACCATTCGTCGAT
GTAAAGAAGTGTAGATGTTCCTTCTTGGCCTCTTGCTGCTTGGTGTTCGGCATTTTTGTT
TGTGTCTTTCTTTGCTTTCGACTTTAGCAACTGAAGTGTGTAATGACATGAGCACTGTTT
GTGTCTAGGCGTCAATTCAGACTCTGCCTAGGATGCTCCTGGAATCTGTCCGATGCTGCT
GGGTTTGATTACGAGCCATGTCAACAAGTATGATGTGCGTTTTAATGTCATGGATGGATT
TACCTGAAGAGATGCCATGATAGAGTGTGGAGGGAGTGGGGCGGTAAATAAAATACTCCT
ATGGATGAGCAGGTCAAAACAGCGAGCATTAAGTTTCTGGCCACATGTGGACGGTGAACG
TGGACCTCAGCTCAGATCCACAGGTTTTTTATCACCCACTTTTCCAACTTCAAACGCCAT
ACGTACGCTTGTTGATTTCCGCGCCTCTGGATCGACGCAACCAGTTTTTTAACCCTTCGT
GTGCGTATTTTCTGAAGCTCTAGAAAACTGGGTCAAAAGTTTTTTTTTTAGAAGAACTGG
GTCAAGACATAAGACAGGCCCGTGAGTGATCTGGGCTGAGCGCTTGTGTTTGTGTATTGC
TTATATGGGCTGGGGAATATGAGCCCAAATGGATTAAACGATATATCATGTAAACATATG
TACAGTTCTCCAAAAAAATGTAAACATATGTACATGTCCTAACAAAATGTAAACATATGT
ACATGATGAGCAGTGATTATCTACTCCCTCCGTACCTAAATAATTGTTGTTGGAGAGAAC
TAGACTAGTTCTCTCCAACAACAATTATTAGGTACAGAGGGAGTACTTGGCAAGAGTTAC
TCAAAAAAAAAAATTCTACTTGGCAAGAACTCCATACAAGAATAAGGGAAGACAAATGTT
CCCATCACACAGTATCATTTCTGACAGTACCCAACACAAAAACATTCAATACCGAGTCGT
GGTAAAGTCGCATCTAAAGAATGTGGGGAAGACACTGGTGAGCAGAAATTTATCCCCATT
TAATCTTTTATAGGCCGTAGCCTATATTGTCTCTACATTTCCCTGTTACAAGCTGCAATG
GTTTCAAAAGAAACAGAGGAGAAGCTGCAAACTGCAGCAAACTCCTTACATCTCAAAGTT
ACTAGGGGTCAATAGTATGTGAAGTCAACCCGCTTCTTTGAGGGAGAAATGCATGTTCGA
CGAGTGAGGATGCCTCAGACCACTGCTGCAAAACAAAGCCTGCATGCCCATTCAAGATAA
AGGATCGGCATTAGAGCGGTCTCTTTGGAATATATATATTTCTTGTTATGTGTTAAATAG
CAATTGTTTGCTTACAATGGTTACTGTCTTACTGTTCCATGCCATCAAGCTTCTGCCTAT
ACTTGGCCAAACTCTGCAGTCAAAATTTAAGTTCTTCAGATTTAAATTATGAACCATTTA
AAATGTCAGCATATCCCTCCATAAAAAATAAATAACAAATACCGGTGAATTTTAAGTATT
CATTTAAACACATGTATGAAAAGTGATGAATTCCACTTGACCTCAGAAATTACTCCCGTT
GACTTCTAAGTAGTTTTGTTCAGAGTAAAAGAAAAGGCACTGTTAGCTATTTTGGCTTAT
GATTGCCGTTTTACATACTCCCTCCGTTCCTAAANNNNNNNNNTTAAAGAGGTTTCATTA
ATGGACTACATANNNATGTATATAGACATACTTTAGAGAATAGATTCACTCATTTTGCTC
CGTATGTAGACTCCTAATGAAATATCTTAANNNNNNNNNNNNNAGGAACGGAGGGAGTAC
ATGAGTAAGCTTTAAATGTCGGACAATGGTCAAGTTACACTAAATATATGAAATCAGCGT
CCTGTTGCACCCAACATGTTCCAGTTAGAAAATACAGAAGACTCTTACCTTGGTATAAGC
ATAGACACCTGCCTCAGAAGGTCCTGCCGGACTACCCCGCCTGATAAATTTCCCTTCCTT
AAATATATACAGCATAGGAATGCCAGTCGACAACTCAAGGCTTATTACCTGAGTAAAAAG
TCTTCATGCATTATTATCTATATATCTCAATAAAATACGGCCGATTGCAAAGTGTAGATA
AACTACTAGATACAAAGTAATATCACCTCCTGAGAAGTCAACTTGTCCAGATGCATTATA
ATTGAACGGAGTGAATTCCCATGGGCAGCAATCATAACATGCTTTCCAGCCACAAGCTGA
GGTATAATCTGTAGGTCAAAATATATGATGGTTACAGTCCTCTTAAATATGTTACTAACT
CAGAACGGCAAATCAAAGCTGAATGCAGACTCCTGATTTTATATCACATTGGGTGATAAC
AGATGACACAAAAGCACAAATTGATATGTCTTCAGAGCCAAGAGACAGTTGGGAGGGCAA
AGTGAAACCATAAGTATCCACAATCAAAGGTCCAACTAAAATTAACAGCACTGAAACATA
TTCTTACTTGATCTTTGAAGTAAGAAACTGCTCTTTCTGCACACATCTCTAGGCTCTCGC
CATTTGGGGGAGGAATGTCATAACTACGACGCCATTCATGGACTTGGTCTTTGCCAAACA
GATCAGCCGTTTCTTGCTTGTTAAGGCCTTGCAGTTCACCATACCTGTGAGACACAACAT
TAATACAAGTCCACATGATACTGAAGAGGCAGAAATACAATTGTGATGATATATGAGTGA
ACCCTTACATCCGTTCATTCAACTGCCAAGCTGTTATGACAGGAATGGACTGCTTCTTTG
TTTCCTCGCTGTACACCTGACTCCACCGGTGTGCCCGTTCGCTCTCCTTGTGCACAATGA
TTGGAACCTGGTAAAATCACAGACACGAAGACCTCCAAATATATTAATTGATTCAAAGTA
TCCAGATACAGCGTGCTTCTACTACAAATCTGATAGAGAAAAAAATGTAGAGAACCTTCT
TACGACGGTGCTGCATCATGGCAAGCATGGCGGTCATCTGAGCACGGATTAGTGATGAGG
TGTATATAACATCAACTGGTATATTGCATATCCTTTTACCCGCCTCGATCGCCTCATTGA
CACCCTTTGGGGTCAGGGGCACATCAACGCAGCCAGTAAACAGATTTTTCTCGTTCCACA
GCGATTCCCCGTGCCGAATCAATATCAGCGCAGCCTCGCCTACAAGCACATGAGGAAATT
GATTGATATTATAGCAGGCGAAACAGAGAATACCGCTGCATAGCCTGACAGAAGTTAGGA
AGATTACTTGATTTTTTGGGGGTGCTGCCGCTTTCGGGGCTCGACGGTAGCTGGGCCGGC
TCAATCACTGAAGATTGCGAATTCGACGCGCAGACCAAGCCCAGTTTCCGGCTGCTGGGG
CAGCAACCCGCTGCTGAAACGAAGCGCGCATTGCCGGCCCTCTTGTCACGGCTGAAGCTG
GCGGAAGCGGGCCGCGATTTGACGGAGACGAGCGCATGCTGAGACGTGCACGCGGCCATT
CTGCTCCGCACCAAAGAAAGCAGCAAGGTTAGCTAACCCTCCCGTCACATGGTAGATTGA
GCAATCAGTCCACGCATATCGAATCAAAAGAAGCACGCAAAAGAGATCGAGAGCGAGCCA
AGAGGGATAAAAAAATCGCTCGCTCCCGGCCATTGCATTCCGAGCTGCAAGCCCCCGGCC
ACGAACGAATCGCGTCCACGCGGAGGGGG