Contig Data
morexGenes
Links



Map Locations of contig_43958 (6700 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_43958

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_59840 1 1778 bp MLOC_59840.1 Available Available LOC_Os11g03290.1, FRAME:-1, EVALUE:0.0, 13111.m00267 protein nucleoside-triphosphatase, putative, expressed





CDS Structure of MLOC_59840






Contig Sequence (6700 bp)

>contig_43958 6700 assembly3_WGSMorex_rbca.fasta
GGCGCGGTGCGTGTCTCCAGATTGGTGCGTATCGCCAAGATGAGCGCTTGACTCTGGAGC
CGAGCCTCTGGTGCCGATCCGAAGGAGTTCCTGCGGCCGTGCCGCCGCGTCAGGTAAATG
AAATGCAAGATAATGGCCAAGATGAGATTGAGATGTTAGTGGCAAAGATGCATGTAGTTT
CAAAGGAGTAATGGTATTTTGATAATTAGACAAAAGCAGTGCCATAAGCAGAATTGCAGG
AGCGACTAGCCGCATTGACATAAAATTTTCATTTATTTTTCTAGATATTAAGCCCATTAT
GTTTCAATTCGTAGTGATGGAAACTATCATTGTGGGGACTTCTTCTGTTATGTTGCATCC
CCATTCTGAAACCACTCAACCTACCTATGTCCTGTAAACTGCCTCATCTTCGATCCATTG
CTGATGGAACATAAAGAATTCAATTGCTATGCTCAGTTGAAATGTGTCAGATAGGTTCTT
TTTGCTGGATATGTTGATAATATCTCACAAGTTCTTCTTTTGCCTAAATTAACTTGCATG
TGCAGGAAGTACATGCGTATTATGAATCTAAGTTTGCTGAGATTGGGGCATCGATAGAAG
ACTGTACGGTGTATGCAAAAATGACTTCTCACTTAGAAGAGCTAAGTGTAGACACGGATC
TTCGGGATGCAGAACTGCGTGCACTACTTGACTGTCATTTTACTGAGATGGAAAGATTGA
TGACTGCACATGTGGCATTGGCTAACGTTAGGTTGATGTCGATGAAGGAGCAGATGAAGA
AGATGGCTGAAGAAGACAAGGCGACAACGGAGGATTTGGTTGGATTCATGGAACTGTATT
GCCATCAACTCTTTCCTACGCTACCCAGCCTACCCCCATGCCCCTTCTGATGAAATCTGG
TGAATGATTTGTCCTGTGCCACTCGGTGAACTGCTTACCATACTCTACAACATATTAATC
TCCGAGGACTCTGGTTTGACCTCATCTTTTGTCTAGTAAATGGTAGCTAGCTAGTTAGCT
GGAGCAAACACTAATGGTGTTTCAAACTATTAGAAATATGTGGCACTTCTTACTTATTTT
TGTAGGAACACTCTTGTTAGACAGGACTTTGGTTAACATGGTTCCACACACACCCTTATA
AATAGTAAATTAAAAACAAATGCACGAAAAATATGATTTTTTTGGTAACATATGCGACTG
GTGTACTCGTGTATGAAGTTTCACCAAGAAGAGAATTTCGCGCTATCCAGGGCAATAATG
ACAAAATAAAACAGTATTAAAAAACATTGTTTCATGAATAGTATGGTCCCAATTGTATTT
GTTTTGTTCTGATTGTACTTTCTTCACTAAGAGTACCACGGGTGTCATTTCTTTGTGAAA
ATTCAAATGTGAGTAGAATGGTCAACCAAATTTGAACTCCCCAAAACTAAGATCTTTTGG
AATTTTTTATTGTTGTTTTGAATCTACTCATGTGGGTGCGCATGGAACAATGTTTGTTTG
TGTACTATCGCGCTGTTCCATTTCCCCCCCTATTTTTCAGGTACTTATTTTTGGGCATCT
CGAGCGCTGACCCCCAAAATAAAGACAATATCCATCCCGGGCGCGTCTGTATGTGTCCGT
GGACAGTGATACGGAAGCCGGCCATCCAACCTTCTGTATCCGCATACATTTCAAACGGGG
TTCAAACAAACCTAGTGATCTTCATGCAAATCGGTTAACTTCAGGCTTCTACCGGTTTGC
ATGGTTCATCCCCACATGTTCCGCCAGATCATTTAGAAATTGTTGATGTGCTTCTCTGTC
ACAAATTTCCTGATACATTTTGATTTATTTTTTCTAAATTCAATTGGTTCTCATTGCGGG
AGCTCGATAAGCTCTCTAACATAGTCATAGTTCACAGGGTGTGCTTAGCAAATGCTCATC
CTACATGATCATGATGTGCATCTGACAGAAACATGCCATGACTACCCATAATGCACGATG
AAGCTTAATCAGATAAAAGTCATTCGGTGAACTTATGGTGTCACCTTCTCCAGGATAGCA
ACCTTTGCAGATTGCAGTGGATGGTGTCTTCTGGTCAACATCAACAACTTTCCGTCCGCT
TCTTCATTGAGCTCATGAGTTTCAACAAGGTTGCTTCAATAGTGTAGAGTTCCGGAGGCA
GGAACGAGCTATGCTAATGGTGCACCATCCGTTAATGTAGATGCAAGACCACAACAAACC
AAACATTATGCAACAAAATAAATTGCAACGAAAAAGAAAACACGAATCTCAAATCGACCC
CAATTAATCTCCTGCGGTTTCTTATCACTCGTTATTCTGCAAAGACACAAGGCCTATATA
GAAGCTAAACCATGCTGCTTTGATCCGCGGCACTAATGAATCGATCATCACATGCAGTTG
ATCATGCAACATTGAGCGCCGGATCTTGGTGGAGGCGCTTCTTGGGCGCTACGGCCTCGA
TAGCCTCGCCGAGCGGCCACTTGGCTTCCATGAAGTACTCCCCGTGCTTCACCTTCTCCA
CCAGCGTGATCTCCCTCGACCGCGCCAGCCCGAACCCGTAGGCGAGCAGCGTGTACTGGT
ACACCAGGTCCATGCACACGTACGGCGTGTCGCGCACCCCGGGATACGCCGCCTTGGCCT
CCTCCAGGCTCAGCGGGCACATCTTCTTGGCCGCCGCCCTGAACGCCGCCGGGCTGGACC
TGGCGCTCGGGGTGCCCTTCTTCACCCAGCCGACCTGGGAGGCCATGGCGTAGAAGGAGG
AGGCCGCGTACAGCGTGGCCTGCCCGGCGCCGCCGCCGCCGCCCCACACGCCGCCGAAGG
TGCAGTTCTTGGCCTCGCACGGCGCGTCTATCTTCAGTGCCCTGGCCACCTCCTTCCTGC
ACTTCCTGTACACGGCGCCTTCCGGCGACGCCGACGCGTCGTAGGCCTCGCCGTTGTAGG
TGTAGTTGCCGGTGGATCCGCGCAGCATGCACGAGCTGAACGGCCCGGACTTGGCCTTGA
GGATCTCCACGCGAGCAGCCATGCTGCCGTAGTACAGGTAACTGCAAAATCAATAAAAAG
TTGAATATGAAAAATAGTGGTACTCCTTCAAATCAGCTATATAGCCACACTAAAGTGAAG
CTAAATCGGCCTATAGGTGCAGTTGTACACGGCTCCAGTATAACTTTGATTAATAAATGA
ACAGATTAGCAAAAAGTTGCTCCTGTTTCATGTGTCTACCTAATTTACTTTTTATATATG
ATGAGATGTTAAGACTAGTATGATTGATTAAGCATTTTGTCAAAACATTCATCGGTGAGG
AGAGATAAGACTTGTGATTATCCCTGGTGTGCGTATCCCTGCTGCCTCCCTCCCCCTCCC
AACCCTAGCCGCCCCACTCCCTCCCCCTCCCTTCCTCGCCGCCGCGTGAGGAAGCCGCCG
GGCAAGCCCGGGGCGCCAAAGATCGTGGCGGTGGGGCCTTGGCTGCCCTGCGTCTGCGTG
GGGAACTCCGGATCTGGAGCGGCGACACTATCAATAAAGTTTTAAATAGTGGTACTCTTT
CAAGTCAACTATGGCGACACTAAAGTGAAGCTAAATCAGCCTTTAGCGTGCACCTTTTAT
ATATGATGAAACTATGGCGACACTAAAGTTTTAAATAGTGGTACTCCTTCAAATCAACAC
GGCCCCGCTATAACTTTGATTAATAAATGAAATATTAGCAAAAAATGCTCGTGTTTCATG
TGTCTACCTAATTTACTTTTTATATATGATGAGATATTAAGAGTATGATCGATTAAGTAT
TTTGTCAAAACATTTATCGGTGAGGTGAGACAGATGATGGACCTGTGGACGTAGACGTTG
TAGTCTTTTCCCTTCAAGTACTCCTTGGTGATGTAAGGATCCATGCCATGAGGTGCCGCC
GGGGCGTTTGCGGCGGCGTTTGGAGAGACGGCGTACGCCATTTGGACGGAGCCGCCTCCA
AGATCGATCACGCCTACCGTCTTCGAGTAGTCTCCTCCCAATCTATCCAACAGATAGTTC
AGAGCAACCTGCATACATATATCGAGACAGAAAAATATAACAAAATTTTCCTTTGAACAC
AGAAACACAAACATACGTAGATTCTTAATTTGTTATAAAACCATTGTACATTTTTTTTTT
GAGAAGGAGGAAACGAGCCCCCGGTCTCTGCATCAATCGATGCATGCAGCCATATTATTA
AAAATCCAAAGTAACAAAATAGTTCGAGATAAGCCTGAAGGCTGAAAACATTGTACATGC
ATATACATACCCACATGTAAGAGCCTTCTTGAGATCCCTCGAGAACATTGATCCACTTTG
GGTTGTACTGGAATTTAGTCTTGGTGTGGACAATATCCCTGACCTGCAATATCGTACCAA
AAATGATTGACCAAAACGAACATGTAATTATTATTTGGATTACTATATTTATTATGTATG
TACTATGTATATCACTAATTAACACTAGAAAACATTACCTGGTATAGCCTTTTGAGAATT
GTCTCGCTAAATGAATTTGCGTATAAAGCACCGTAAAAAAAATTGTGTATAAAGTATCGC
TAATAGCACGATATAACAAGCTTATAGTGTATTGTAAGGCCGGCACTATTTTTTCCTTGT
TAAGGAACGTCTTACATTACAGGACGGAGGGAGTAGCAAAAGTGACAATTACCGCTTCAA
GGATCTGCTCCGATTGCTTATCTCCGATAAGTCTCAGCCCAGCAGTGGCCTGCTTAATAT
CATGGTCAGTGTATAAACTACCATATGGAGTAAATAAATAAGAATTTTCGTTTTTCAAAG
ATTAAATTTCATTTTCAATCAAACTTAGGTATATATTACCCCTAGTTTAAGCGGAGTTCT
GTTCATTTGCCACCAAGGCACGATGCTCTTTGCCTTGTCGAGCAGTGGTATCATGGACTT
AGCAGCTTCCAGTGGCCGCCCAGAGTATGAGCTCAGCCCGGGGGACACCTGCAGCAAGTA
CCAATAAAATTAACATTGGCATCGATGATATATACCGGCTCCATGCATGCGCATGTGTAG
CGACATATGCAGTTCATAGTGAAATCTTAAAAGGACTTATATTTAGTTGGCATATCATTG
CCCGATGATCAGTGGAGGGAGTAAATATGAAATGTTTGTGTGAGTTTTGCATGTGTATGT
ATATATATATACCTTGGCGAACACCTCGATCTGGTCACCGATCTGAAGGAGATCCATCCT
GTTGTCGAACTTGAAGACGTGCACGCGCGTGCCCGTGCTGCCGGCGTCGAAGATGACAGC
GTACTTGCCCACCCCCGGCAGCTGCACATCCGCATCCGCTGGCTCAGCCTCCTCCATTAT
ACTGCCCTTGCGGCCGAACCCCATGCCGGCAAAGGCCACAGACGATAATGCGAGGAGGGA
GAGGAGGAGGAGGAGCGGCGGCGCGCCGACGACGCGTGCCATTGGACAGAGAGAGCTAAC
CAGCTGCTGGCCACTGGTGAGGACTCACTCACTGCTGAGTCCAGTTGTAAGTGAGAATGG
GATTTAAAGAGCCCGAGAGGGGATTGATGTTTTCGATCAGCACCCTACTTATTCTCGTCT
GCGCAATCTTGTCCCTGGTAGTATCTGTTCTCTTTTTCTCGCTTTCTAAATATAACTTTT
TATAAAGATTTTAACATGAACTACATATAAAATAAAATAAATGAATCTACATACAGAGCA
AAAATGAATGAATCTCGCTCATGTTATTTTTTGTTGTTTGATTAGTGTCTTCTGTCTGCT
GGACAGACATGCAATAACGTTTCCATAACATCAAACGACAGCAGCAAAAGGATTAGAAAA
GGTGGGCGACTCACGTGTGGCCACACTTGTGGAGAAAAGCCCACACAGACGGTGGATTCC
ACTCATCATCGGGCAATGATATGCCATGCACGCATAGAAAATTAGATCATACACCCACAC
GACGGTTTTAAAATTTTAGTCTCCATCAATTCGCACGTCTACTTCGTTCCTCCTTTGTTT
CGTGGCATGCACGTGGATCATGTTACTCTATTCGGGTATTCAAAAGTTTGACATATCACA
AACCAACCTGTGGCTGGATGGTTAGAGGGATTGTGCTATCTCCGGTTTAGCAGGGTTTAA
ATCCTGATGTTTGCATTTATTATTGAATTTGTTTCGGGATTTTCGGTGATGCATATTCAA
TGGGAGGACACGTTTCCGTCGATGACGAGATGCCTATGGTGATTTCGTAAATTTCCAGAT
GATATGCCGGCTCAATCTCTTGAAGATTCTTATAGGGGAAGTTCATATAAATGAGTATAT
GCACGTGTATATGAGCGCTTGCGTCTATATTGTGCTCGGCAGAGTTCCAATTTTTTACCG
AGTGCATTCTGTCGGGCATTCGACGTATTTCTGTCTGCCGAGTTTGATCCGAACTTGGAC
TCGACTGTAATTCGTAACTCGGCAGAGTAGTGTCGTTTGTCAGTATCTGATGGATCTCCT
GCCTACGCAGATTATTGATGACTACTGGTAAAGCCTACATTTTGTCTTCGACATTATGAT
TGCTTTACAAAGTGCTCTTTCACATATTTTCTAAGTCATTACATAAGGCATTACGAGTGA
GTATCTACTGATTTCATCAGATTATACTCCCTAGTGCTGAGAGATCTACTCCATTTTGGA
GATTATCTTCAAGGTGTCATATTTAGCAATTTGAGATTCA