morexGenes - Barley RNA-seq Database

Contig contig_43926
Source Contig contig_43926
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_43926 (7464 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_43926

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_59803	3	2053 bp	MLOC_59803.2	Available	Available	LOC_Os01g62480.1, FRAME:+2, EVALUE:0.0, 13101.m06695 protein laccase precursor protein, putative, expressed
CDS Structure of MLOC_59803

Contig Sequence (7464 bp)

>contig_43926 7464 assembly3_WGSMorex_rbca.fasta
TGGCGGCGCTGGCGCCGCCCTGCTGCTGCATGGCTAGCAGGGTTTACCGGGCCCAGTTCA
GGCCTGGCCGGGCCAGGGGTGGCCTGGTTTACCCTGCTGCTGCGTCCGGTCGGTGACTGC
GACGGTGCCGGAGGCAGGGGTCCTTCGCACGACGGCGGTGGAGGTGGTTCCTTCCCGTGC
GGCTACAGTGTTGCTGCTCCCGTCGCCAAGCACCCTCCCTTCATCCTCTTGGCCTCATGG
TGGTGATCTCATTGAGGCAGCGTGGTGGCGTCGCGGCCGTGGTGGCGCATGCTGGTGGGC
GTTGGGTTGGCTGGTTGGCTCCGGTCTGGTTTAGGGGGGGGTGGAGTGCGGGAGAAATCC
TTACCGGTTCTTCCGTCTCCGATGCGGTGACGCCCGCGGGTGCCACCATTCCTTCCTGGA
AAGTGTCGGCGGTCTCCATCCCCCACACCCCTTCGCGTACCGGGGGAAACCCTAGGACAC
GTCCGGGCAGCAGCGTCATCGCATCCCTTGTTGGATGTGTTGCTTGGTACGCGAAGGATC
GGAGCTTTGGATCGTGGTGGGTCGATTTCGGAGGATGCAATGGTTGTGGTTCATCCGCGC
TTTGTCGAGCTGCCGGTGTTGGCATTTTTTTTCTTGTTTCTTTTGGTTTGTTATATGCTG
CTCGCCATAGCGTTTGTTCTGTAATCGGTGTTGGTTGCTTTGTAATACAAAGCGGATAAC
CTTTTTCGATAAATATAAGTCTTTTTATGATTTTATTAAAAAACTACATACAAAGTAAAA
TAAGTGAATTTATATTTTAAAATATGTATATATACATCTGTATGTAGTTTTGTAATAAAA
TATCTAAAAAAACTTATATTTAAAAAGCGAAGAGAGAGTATACAGTAGGAAAGATTGACT
CAAGACCACCAAGAAGCACAAAATCGACGTCCCTAGCTTTACCTACTTGTCGATCGGCGA
GTGTTTTGCAGCGGAAACCGTACGTGACTAGGAGTAGGAGGCATGCAAATTAAACCAAAG
GTGATGGATGGAATGCACTGGCTTTGGCTCCACTCCAAAGCTACAGAAACTCCAGCTAGC
TCAAGCTCCTGCCTTGATCGTTCATCCACCGAATCACCTAACGAAAATTGACCACGTAGA
AAACCTCAAAGAAATGGGACGGTGGTACGTAGCTGGTGGTACACGCTTGCCGCATCCTAC
ATGTATGTATATATAAACTCAAGTACTTGTTCGAACAAAAGCATTCCATCCTCACCTGGC
CATACACCTGCTCCTCAAGAGCTCAAGATCGATCAGCTAGCCGATTGATCGGGGCCTACT
TGAAAACCCTGGCCATGGCGATTTCCTCCTGCCTTCCGTCTCCTTGCTCTCTCATCATGG
CGACTCTCATGCTGCTCATCGTCCAGGCACAAAGCATCACTAGGCACTACAACTTCAATG
TAAGTATATATATAGAGACGTCCACACGCATGGCCAACATGCATTTTCTCACATGGATGG
TGCTCGATGGTCTTGCGATTGCGATCTCTGCAGGTGCAAATGGCGAACGTGACGAGGCTG
TGCGCCAGCAAGAGCATCGTGACGGTGAACGGGGAGTACCCCGGCCCGACGCTGGTGGCG
AGGGAGGGCGACCGCGTGCTCGTCCGCGTCACCAACCACGTAGCGCACAACATGACGCTG
CACTGGCACGGCATTCGGCAGCTTCGTAGCGGCTGGGCCGACGGGCCGGCGTACATCACC
CAGTGCCCGATTCAGACGGGCCAGAGCTACGTCTACAACTTCACCGTCACCGGGCAGCGC
GGCACGCTGTGGTGGCACGCGCACATCTCCTGGCTACGCGCCACCGTCTATGGCGCCATT
GTCATCCTCCCCAAGCTCGGCGTGCCTTACCCGTTCGTCGCGCCGCACAAGGAAGTTCCT
CTTCTCTTCGGCGAGTGGTGGAGGGCGGACACGGAGGCGGTGGTCAGCCAGGCGCTCCAG
ACCGGCGGAGCCCCAAACATCTCAGACGCTTTCACCATCAATGGGCTCCCGGGGCCGCTA
TACAACTGCTCTGCCAAAGGTACATTGCGCTCACTTGCTTTCATGCATCCGTAGTCGTCG
AAGATTTGTAAACCTTGTGACCAGTATGCTTACCATGTTTTCATGCCACATTGCAGACAC
GTTCAAACTGAAGGTGGAACCTGGAAAAACATACATGTTGCGTCTCATCAACGCTGCTCT
CAACGACGAGCTCTTCTTCTCCGTCGCCAACCACACACTCACCATCGTCGAGGTCGACGC
AGTTTACGTCAAGCCGTTCACCGTCAAGACCCTGATAATCTCCCCGGGCCAGACCACCAA
CGTCCTCCTCACAGCCAAGCCGCTCAATCCCAAGGCCAACTTCTACATGTCCGCGTCACC
ATACTCCACCATCAGGCCTGGCACGTTCGACAACAGCACCGTCGCGGGCATCCTCGAGTA
CCACAACCCTCGACGATCTGCCTCCGACTCAAGCTTCGACAAGGACCTGCCACTCTTCAG
GCCGACTCTCCCAAGGTTCAACGACACCGGCCTGGTCACCAACTTCACCTCCAAGCTCCG
GAGCCTTGCCACGCCGCAGTACCCGGCGGCCGTGCCGCAGTCGGTGGACAAGCGATTCTT
CTTCACGGTCGGGCTGGGCACGCGCCCTTGCCCCGTGAACGCGACGTGCCAGGGGCCTAC
CAACACGACACAGTTTGCGGCCGCCATCAACAACATCTCCCTGGTGCTTCCTTCGACGGC
GCTCCTACAGTCGCACTTCACAGGCATGTCTAGAGGTGTCTACGGGTCGAACTTTCCGAT
CATGCCCCTCTCACAGTTCAACTACACGGGGGTATCGCCGAACAACACCAACGTGGCCAC
CGGGACCAAGCTGCTCGTGCTGCCATTCAACGCGACGGTGGAGCTGGTGATGCAGGACAC
GAGCATCCTTGGCATCGAGAGCCACCCTCTGCACCTACACGGCTTCAACTTCTTCGTTGT
GGGGCAGGGGTTTGGCAACTACGACCCTGTGAATGACCCGGCGAGGTTTAACCTCGTCGA
CCCCGTCGAGCGGAACACCGTCGGCGTGCCGGCCGGTGGGTGGGTGGCCATACGTTTCCT
CGCTGACAACCCGGGTAAGCAGAGTTGCGTATACTATCTATTCATGAGACAGGATGTTTA
ATTAGCCTGTGCTCATATGTGTGATATGCATGTATCCGCAGGTGTATGGTTCATGCATTG
CCATTTGGAGGTGCACACCACTTGGGGGCTAAGAATGGCATGGCTGGTACTAGACGGGAG
CCTGCCGAACCAGAAGCTACAACAACCGCCATCGGATCTTCCCAAATGCTAGTCGGAGTC
GGACACGATCAACCATGTTGATTTTTCCTCATTTGTTATCTGTTTGCTAACTTGCAAATG
ATTTCCCATTCCAAACATTTTAGTGTATTTAATTACTGTGTTGGTCTTGTAATTTTCTTG
TATTTTCCAAATATTTTAGTACCTTGTAGTGACAAATGTTTTGACTCTTGGCGAATAAAC
AATGACATCAATTGAATGTTCAAACCCTTAAGCCATTTTTTGTGGTATTTCAGTTGCTTT
ATACCTCATTTGTTATTAAAATAAAAAGTGTCTAGAGCTCATCTAGATGAGATTAATTTG
GTCTCATTCACCTCAAAATAAAAAGTGATATAAAATAATACTACAAATCTACAATCCATA
TCAGCACACACGCATCTTAAAGTATTACATCCAATGATCATAAAGATGAATGAGGCATAA
TTAAAAGTCAGCTAGATGAGTTCTAGCAAAATTGATTAAAATAAGTATTCATTAGTTTCA
ATGAAACTATTGCATCATCATTGGCTAAACTTACTTGAGTTAAAATAAGCTTCACCTCTT
ATTTTATTTTTACATGCTCGATGAGCATAAAAGTGCTACAAGTATTTGTTTTGAACCATT
TGTTCCATAACCTATATCTATATCTAGTGTCACCTCTCAAAAAAAAAAGATTAGTGTTTC
TCTGCCTTTCGCCAGTGTTGTTGTCTGTCCGCCTCGTCTCCGATGGCCTTAGGGCCATGG
GGACACGATGGATTCCGACCTTTGCAAGCGGGAGGGCTTCATTTTTAGATGTTTTTTTAG
TTTTGTTAAGGTTTTTGTCATGTACAGGAAAGCAAGACGGCGGGCGGCTCCCCGAAGATG
GAATAAGGTTCTTCCTGTCTAGCCCCTATCCCCGTGGTGCGTCTAGCATCGTTGGTGGGC
ATGTGAAGGTGTGTCTCCGGCGGATTTGTCTTTGATGGATCTGCTCGGATTTGATCGTCG
TTCGTGTATCTTCATGTTGGATCCTTCTAATTTATGCTACTCTTCATTGGCGGCGGTATT
GTTCTGATGGGTGAGTCCTATGAGGCCTTAGCATGAAGACTTCCCGACTGTCTTTTACAA
CAAGTTTTGCCCGACTCCAACGAGGCAAAGGCGATGACGATGGCGCGTCTTCGGATCGTT
TCAGTGCTTGTAGTCGTCACTAGATGGTCTATGAACCTGCATGTAATATTATTTTTTGAG
TTTGTTGTATTGACATGATTGGACATGAATAGATCAGAAAATTTCCTAAAAAACCATCTG
TTTCTCATTCTGAACTATTTAGCATTTATATTTATATTAGGAAGTTTCCATTTCCGAACG
GAGATTGAATGTGATTTATCACACGACGTCTCCTTTTCAGTTTCTTATTTGGGCAGTGCT
CTGCGCTGGTGCGCCGGTCAAAATTTTTGGCCGGCCGCGCGCGGGCCGTCGGATCCGCTA
GCTACACGCGGGTCGTACCGTTAGATTTTCATGCAGTAAAATTTCTCGATGCAACAAATT
TCGTCCACGATGCAGCAATTTTCATCCACGGTTGTAACAAAAATATAGTTGTAGCAAAAA
AAAAATCAACGTGGTCGTAACAAAAAAAAGAAGCTGATGATGCATCGTAGCAAAACAAAA
TAAGGGTTGTAGCAAAATAATCTGGTGAACTCGGGTTGCAATTCTGACGAACGTGTATGC
AACATTTTTAGTGAACGGTTGCAGTAAAAAATGAAACCGGTTGTAGCAAAAATTAACACG
ATTGTAGCAAAAAAAACGGTTGTAGCGAAAAATCCGACGAACTGAGGTTGCAACCAAACG
TATATGCAACTTTTTTAGTGACCAAATGTAGCAAATTTAGGCACCGGTTGTAACAAATTT
AAACAATCACCACAGGGGGAAATGTTGCATGGCCATACGCGCGGATCACGCGCAAGGCGA
GTGGACAGCAAGCGACCGGCGCGTTGCTTCCGTCGGCGCGTCGAAGGGAAACATTTTCCT
TCTTATTTTGGATGGTGTGAGTACATGACAATCTTTGGGAGATAGGGCGAGTGAACATCG
TGCATTTTAGGATGGCATAGAGTGCTCAACACACTGAAGGAGCGGACGGTGTACACATAA
GAATGTGATCTTTGGTTGTGGGTGTGGCTACCGCCCTCGTGGGCGGCTCGGCCTGTGGCA
TCGCGTCATCATTCATCTCGACCTCCATGAGGACCACTCCAAGGCTGGCGACAACGACGA
CAACCCGCATCCAGCGGAAGTCCATGAGTTCACCTGGTACCGCACTCTGGTTGATGGCTC
ATATATCCCAAGGGAGCGGCAGCAACAAAGAGGAGGTGTTGTCCGGCGCTCAGACAGGCG
TGACGACGAAGACGGCCGCGATGGGCGGTGTGGGCGTGGCGGAGATCATGCGCGAGAGAG
CTGGGGTGCCAGGGTGCGGCGCTTGCTCTCTCGAAACGCGCGTGATCGCGAGCGTGATGA
AGGCCAAGACCACACGCGGGAGCGCTCTGGTGGGCGTCAGGATGATGGAGGCGCCCCTGC
TCCCGTACCGGCCCCTTCTTCGGTTAGCGTTCTTCCTGCTGTCATGCGGGGCTTAGGGTC
GGGCAGCGAGGGGTTGGTCCGTGCCATGTAGCTTCCGGCCATCGAGGGGTCGGGGTTGGA
TGGTGGCCACGGCCGCAGCCTCGTGCGCCAGGTGTCGCCACATTCGGCTAGGCGCCGCTC
TCAGGAGGAGCTCACCCCTCCGGTGTCCCCCCCACCCCCCGCTCTCTCTGACCTCGGTGC
TACCACCAAGCCCCAAATCCAAGCGGTCGGGGGCCTCAAGCTTTCCTCTACAGCAGGTGG
CTCTAGACCAGTCCGTGCTCCATTTGTGCTCGCCTGTGTCGCTCCAAAGGCCCTTGCTAT
CACCTCTGAGGCCACCGGATTTTCAATCCTCTCCAACACCGCCCCTCATATGCGTCAGCC
CGCTGCAGCGCACTCCCTCACTAGTGCGTGCTCCACAAGACAAGACCCATGAAGATCGTG
TGAAGGCTCTCTTTGAGGTGCGGCAATACAACATCTTTGCAACACCTCCATCGCCACCTC
CAAGGCCTCCTACAGCTCGTCGGAAGATGCTGGCTGGGGTGCAGATTTCCAGGAAGGGTG
GCCTCTCACTACAACAAATAAAGCGTTCTGGGGCAAATGTTATGGATGTGTTGGCGGCCA
AAGTTGCACAAAAATTGGTTTGCCGCACGCTTGGAATAACGAGATATGGGAAAGATGTGA
CAGGAGCAATTGTGGATGAGTTCACTTCCAAGTTCAAGGACCAACTCGCTCGAAAGGTGA
TCATGGCGATGCGAGGATTCTTTTTCATCCTGATGACGCGGCTGTCAACGGAGTGGAGGA
CACCCTGCTTGATCATGGGGGAGAGGGAGCGCTAGAGTTTGCTCACCTGTGAGATGCAAC
ACTACAGGATGTTTGAGGCTCCTTGTTTGCATGCACTTGCCTTCCTGATGCAAATGTTAT
CCCGGCTACTTAGTGCATCATGTGTGTCATCTAGTGCTCGGACTAGTATTAGTGTTGCCT
CTTGTTCTAGAATTGTGGGTTGCATCACCGGGGTGTGGTCCTCTTCTATGCTTTTTCACT
TGCTTCAGCATCCTGGTGTCACTGCTATGTTTTTCCCTACCTGATGGTGATGTTAGACTG
CTATGCGTGGCAAACTACAAGTGTTTCTTGGTGTGATCCATGACAATACCGTTGGGGATT
GTAGTAATAATTCAAAAAAATTCCTACGTCACCAAGATCAAACTAGGAGAAACCTGCAAT
GAGAGAGGGAGATCATCTTCATACCATTGAAGATTGCTAAGAGGAAGAGTTACAATGAAC
GCGGTCGATGGCGTCGTACTCGCAGCGATCCGATCCAAGCACCGAACGAACTGTGCCTCC
GAGTTTAACACACCTACAGCCCGAGGACGTCTCCNNNNNNTTGATCCAGCAAGGGTGAAG
GAGAAATTGAGGGAGAGCTCCCGTAGCACGATGGGTGGTGGTGGTGGTGCTCGTGGTTCT
CCGGCAGGGCTTCGCCAAGCGTCACGGAGAAGGAGAGGTGGAGAGGTAGGGCCGCGCCAA
GGGAAGATGATCAAGGTGTGTGCA