morexGenes - Barley RNA-seq Database

Contig contig_43900
Source Contig contig_43900
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_43900 (6749 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_43900

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_59774	4	1402 bp	MLOC_59774.1	Available	Available	LOC_Os07g07310.1, FRAME:-2, EVALUE:1e-104, 13107.m00711 protein polynucleotide phosphorylase, putative, expressed
CDS Structure of MLOC_59774

Contig Sequence (6749 bp)

>contig_43900 6749 assembly3_WGSMorex_rbca.fasta
GCCTGGTAGGGATTCAGTTCCTGTCAGTTCACCTAAATTGATATATCTTCAGAATCAAGA
GCAGAGAAGCATAACAAAAATAGTATAAAGGGTATGGTAGCTACCCATGTAAATCCTGAG
TCTTCATTTACTGTTTAGTTTTAAAAATCTGTCATGTGGGGGGCGACCTACGGGAGGCCC
AAGCCCAAGTCCTAGCCAGCTGGTTAGGGGTGTGCCAAAGTTCAGTTAGAGTCTAAATAA
GGTAGAGAGTCTAAATAAGGTAGTAAGATTGGAGATAGGAGTGTTTTGTCCTCTAGAAGG
TTTTCCCTACTATCTTCAAATCTGTAGGAGTCGGCTTATATTTCTTTTAAGTTGGCTTAG
CCTCCAAGTTGTATTGTGATATATATATATATAGCACCCCTGGACGTGGAATAAAGCAAG
CAGAAACTTATCAATCTATTTTCTCATCTCCTTGCTCCTGTGCCCTGGCGCCCCACCTCA
TCTTCTCTTCCTTGCGATTGGTCGGTGCAGTTACCGGCCGTGCCCTCCAACCTCCCACAA
CTACTACCTCAGATCACTTCCATCCCCTCCTATCCAAGTAGCCCGTGACAAAATCATGTA
AATATTTACTAATGAGCGTGCTTGGTTAAGTTAACCTGGAGTCTTCATTTAAATGGATTA
AATCTGGACACTTATCCGCAATTTTGTACAGTTTGAATTAAACTGGAAGCTGCACTATAT
AAAGGTCCTAGCCCCTAACCTCAAGATCATTGTGAGCGGAACCACGGAAAAGGATCGAAG
AATAGGGGTAGACCGTGTGCGCAATTTTTATTGCAGTAATGAAGCTTCCATTATGCCACA
TTTGGTCTAGTTAACCACATTTAGCACGCATCTGGTTTCCTGCCAAAATTCCAGAAAGGT
TCACTCTGATTGGCCTGCTTATTCATTTTCTTGCCAGATTTGAAATTTGGTCAATTCATG
GGCCACTGATTCGGTAACCAAATGCTGGGTAAGGAAAACAATTGGCGCAAACCAAACAAG
GCTTAACATAGCTGCTAGCCAGAGAATTAATGCACAACTAACTATCAAGAAAACTAGAAG
ATTTAAGAGACTGATAGGCAAACACCCGACCAATAGGTGAATATTCTTTTCTTTAAGCAA
AATGAGCTGGGGAAAGTATATGTGCAACTGTAAACAAAACTTGAGCACAAACCTCTATCA
TCAATATAGCACTATCGGTCCCAGCCATCATCAAATCCAATTCCGAGTCTTCCATTTGTT
CAGTTGTTGGGTTAACAACAAACTGATCATTAATCATACCGATTCTTACGCCAGCAATTG
TTTGTTTATTTGGAACTTCAGAGAGTGCCCTGCAGAGATAGCTTGGTGATAAATAAGAGC
AGCTGAAATACTTTTTTGGGTCAAAATTCACAGAACAACACTTGATTAATCCAATATTTT
CATTTAACCTACATGGCGATACCAGCAGCTGTAACAGCCACGCAATCAGGGGAATGAAGA
CCATCATAACTGAAAACCTGCAATAAGAAGAATTTATTTGTTGATCGTATGAATAATAAA
GCTCGTAAATGAAAAACAAGTATTCGGTGGAATTGATGACACATTGTGCTCAAACTCGAA
AATGATGCTATAATATATGTATGTACACACACAAAAATCATTGGATTACCCAGGATAGAA
TCTGAGTTTCGTAGTAGAACCCCTTGGGCATAGTAGGGCGTAGAGGCCGATCTATCAATC
TACATACTAAAACCTGTAATTAAAGCAAGAAAGAAACTATAATGAGCCGACAAATAAAAC
AAATCAATATAGCAAAAGTTTTTATAGTGAACCTCGTGGTCTTTTGCCCTTCCTTCTCGT
TTAAAAAAACCACCACTACGTTGCATAAAAAAATAAGAGTAGAGTGAATGAAAATACACA
AAACACAGGTGATAGTTGATGACACAAATGGCAAGAACTACTTTGGGTTTCTGTACCTAG
TTCTTCCAGCAGCTGAAAGGCGCTCCTGATAGTGAACCGACATTGGGAAAAAATCAGAAG
GATCGCTTGGAGTATCAGCCATGCAAACAGAACAGTAGACAATCTGCAGTGCAAATAGGA
ATTTTAGTTAAGTATGCAAAAGTTTCGACGTTACTGGAAAACAGCGATAATCATCAGATC
TCTGTCTTAGTTCAAAAAGAGTACGCTTAAACGGCGGTATGTGTAGGAAAATTTGGTGTG
CCCTGGAAGTGACATGAAGAAATTATGAGAGCGAGATGATGACAGAAGGAACAAGGCAGG
TTTATCTGGTTGCAATGCACACTCAAGCACAGAATTACGAACAGCAACAAGTTCATGGGA
GCCTAAAGTGTGGGAAAAGTTGGAAGAGTGTTCAGATTCCTGCTATGCCCATGGCATGAA
ATGAATACATTACAGGGCATGGAAGCTACTAGTCTACCACCGATAATTGATTTTTGAGAC
AGGTAGCTACACAAGGCATAGTACAAATGTAAGTCTATAGCCAATTACAGGAAAATTGAC
CCATAGTCATAATAGGACAACTGAATAGTCAAATGCTCCCACTAGAACTCTGAGAAAATT
ACAGCCCATTCTAGCACAACATAAAATCATTGGTGCACTGTCAATGGATTGAGTAGTCTA
AATCATGCATTTCAAAATTTCGGTTCTTAGACCAGCTATATTATTTCATATGTGACTCAC
GTGTGCCAAGAAGAACGTGAGGTATTTATATACTAAATTTCAACCACTTACTGTTTCGCC
ATCTGTGACCATTACAGAACCACTAGCTTGCCTCCCAATGTGTCCTGTTTCCACTAATAT
CTGAGAGACCAAAAGAACCAATCCCGTTAAAAAGACATTCTCACGCTGCGTTAAACAACT
GAACCAAAAATATATATACTAACTGTAAAAACTATCAGGCGAATAACAATAAACACATAA
TGACATAGTACCATTACCATAGGTATAAGCTTTGAACATTGAAGGACAACTTAGGAACTG
CAATTATAGTTAATTAGGTATACATATGGAACCCACGTTCATATACTGCATGCACTACAA
TTCACTTTGGAGAGGTGCACATTGAAATGGGAGGGCAAGAACAGTTTTCTGCTGCATCAG
TCTTTTCGTTTTCTTTCTTCGCGCAGAAGAAAAGCGATCTCATCTCGCTGCTTGCAACCA
GCCTTCCAGCAGCGGCTCCCTGCTGACGATCTCTCGGTCATCAGTGGTGAGGGGTCGACA
GATCTCGCTCATGCAGACCTGCATAATTGTAGGTTTAGGAGCCTAGTAGCTTAGGTTTTT
GCCGTTCGACGTCTTGGCTCCAACGATAGTGACGAGGCAATGAATAAAGAAGCTCCAATC
CATCCTTGACGTGGCACATCCCTGTGATGGAATTGTGTCCTCAGGCTCCGCTGTTGTGAC
GTCGTTTGCTCTGGCATCAACGCAAAGCACGGGAGGTTGTTCAGGAGCGGGTGCCGACGG
TGATCAACATCGGCAACAGCTGGAAGACGGTGGATCGGGGTTGAAGGTTGACAGGTCAGG
TTTCCTCCGACATCGTTGCGTGGGGGTGCCAGATTTGGACTTTGATGGACTATGATGGCG
TGTCGAGGGTGCTGCCCCAGCCAGATTCTTTCAACGACAATGGCTTCGCATTTGGCTTGG
AGGTCCACATTGCTATAGATCAGCGATGGAGCCACATCGAGCTTGGGTAAAGAGGTGTTC
TGTCCCCATATCTTTTGGTGGTCGTTGTGGTGGTGTTGAAGGACGATGACTTCAAGCTCA
AGGGATTTTTCGGTCTTGATTGTAATTCTACTTCTTCATACGCCCGACCCTTGCTTCACT
AACAGCTTGCTTTGCGGCCTTCTTTGCCATCTTGAACTTCTCTATGTTGTCTGCACACCT
GTCTAGATAAAGGCGTCTGAAACAATCTTTCTTCTCCTTAATAGCGTTTTGGACATCATC
ATTCAACACCACCACAGCTCTAGCCTAGCCCAACTCGTTTGGGACTAAAGGCTTTGTTGT
TGTTGTTGTTGATGATGATGATGATTGTAATTCTACTTCTTGGCTGGGGTCTTTTGGGTT
TAAGTTAGGGTTCTATTGTATTTTCAGCTCTATCATGTCGGTGCCTACGGAGCATGTATC
TTACTCTATGTTATATGAATGAGACGCGTATCTCATCTCTACTAACTTTTTTTGTGAATG
GGATGTATATAGACACATTTTAGTGTGTTTGTTCATTCATTCCAGCCCGTATGTAATCCA
TATTGAAATATCTAAAAACATCTTATATTTGTGAACGGCGGGGGTACTTAAAAAGAGCGT
AAGGCCAACTCCAACGCACGAACCCAAATGGTCCGGCCGCGTCTGTTGGGGAGTAAACGG
ACAAAACAGGCCGCCCAACGTGCAGGAGCAATCAGACCAATGTCCGTTTTTGGTCTGCTT
TCAACCCATTCCCGGTCCAACTTTGAGCCGCTTTTGCGGCCGGACGGACGGGCAGGACGC
GCGCCCTTGTCCTCCCCCTAGCCAGCCCATCGGGGACACAGCCATTTTCCTCTAAACCTG
CCCTTCACCTCCGCCCTCCGCCCACAGCCATCGTCGCCACCACCCCTATTCCCGGCCATA
TCGCCTTCCATCGAGGCCATCCGCCCCACAACCACGCCGTTTCATACACGGCCCACGCCC
GCATTTTGGTAGAGCCTTTTGCCGGCGTTCGTGGTTCCTTGCTGTCGGTGGGGGAGAAGC
TACAGCAACCGGCGCCAACCTTCGACCCCAACAACTTCTGCCAGCTGCTGCAGTGCCGCA
GGGCGCACACCCACCAACACTAACCTAACTTCGCGTACTGGACTTGCTCTTTCTGGCCGC
ATCTCCACCACGACCGCAAGGTGTTCAACAATTTGCTCACAAGGTATTCTAGATAGCGGC
GATGAGTTTTTCTTTCGTCCTCGGATGATGAAGAGCTTGTGGTGGCTGCATTGGTCGTCC
TCGACCACACTAGTAGGATGCAGCCTTGGTTCAGGGGATCAATCCCTGGCCATGCTCCGG
CCTTGAACCGCAATAGGGAGAAAGGCCACACCCTTCTCTATGTCGATTACTTTGAGAATA
GTGCACTCTTCAAAGCACACAAATTTTGTCGCCGCTTCCGTATGTCAAGACATGTGTTCA
ATCGTATTCGGGAGGGAGTGGTAGCATATGACCCATACTTTGAGTGCAAGGAGGATGCCT
TTGGCAAGCTTGGCTTCTCTTCTTACCAGAAATGCACTGCGGCTGTTCGCATGCTTGCAT
ATGGAATTCCCAGTGATCTTCTGGATGAGTATGTGCATATGAGTGAGTCCACATGTCTCT
CAATGTATAGTTTCTGCAAGGCCGTGGTGGCAGTGTTCGGCCCTGAGTACCTGAGAGAGC
CAAATGCTGCTGACACAAAGAGGTTGTTGGCGATCAATGCCGAGAGGGGCTTTCCGGGCA
TGCTTGATAGTATTGATTGTATGCACTTGAAGTGGAAGAACTGTCCATTTGCTTGGAAGG
GGCAGTACAAGGGGCATGCGAAAGGTGCCATTGTCATACTTGAAGCGTGAAGCGGTGGCT
TCACAAGATCTGTGGATATGGCATTCTTTCTTCGACATGGCTGGTTCTCATAATGATATC
AGTGTTCTTCAACGTTCTCCAATTTTTGCAAGGCTTGCAGAAGGCCACTCCCCGGAAGTC
AACTTTGAGGTCAATGGCCACCAATACAACAAGGGTTATTACCTGGCTGATGGTATCTAT
CCTCGGTGGTCCATTCTTGTGAAGACCATACCGATCCGCAAGGAGAGAAGAGACAGAGGT
TTGCCCAAATGCTGGAGAGTGCTAGAAAGGATGTGGAGCGTGCTTTCGGTGTGCTTCAGT
CTCAATGGGGTATCGTCCGAAACCCTGCATTGACATTGAGCACGCAGAAGCTTTGGGAGG
TGATGATTGCTTGTGTGATCATGCACAATATGATCGTGGAGTATGAGCGTGGTGATAGCA
TCTACGACCAAGGGTTTGATTTTCAGGGTGAAAATGTTGAGCTTGAGCAGGCACTCCTGC
AACCTTCGAACTGTTTGTCCATTTTCATCGTGAACTGTGTGATTGGCATACTCATGTCCA
GCTTTGGGATGACTTGGTTGAGCACATGTGGACTCACATTGGCAACCAGAAGATCCGTCG
GTTTAATTTCTTTTCACTAAAACAATTTTCAATTGGGTTGTAAGAGTATTTGATATTGTG
TTTATTTTGATTGGCTTGTAATAATACTATTTCGGATGTGGAACTATTTTCTATGTTTGC
TTTGAACTATTTGCTGCATGTTGATCTCGAACGGATGAGATGCGGCCAAAATACGTCCAC
GCATTGGGCGCACGGCCGGTGCATCCACAAATCCGGACCGATGCGGCCCCATTGCCACCC
CCAAACGGATAAAAAGCGGACGAAACAGACGTCTGTTTGGGGTCGTGCGTTGGAGTTGGC
CCAAGGCTCCATCTTACGTCATTCTTCGTCCCCACCACCTCTTAGTCCGTGAATTTATTA
TGGTAGGTTGTTTCTTAGATCATGGTTAATAGTATAGCCAACTGTCGGCCATAAGAAGTT
GCCATGTCATATATAGTCGACCTAATAGTTAACACGTACTCCCTCCGTTCGGAAATACAT
GTCATAGGAATGGATGTACCTGTTAGAGTTATAATATAAGTCANNNNNNNNNNNNNNNNN
ATCCCAATATATAAGGGGTTTCCTGCATA