Map Locations of contig_43892 (9419 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_43892

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_59762 3 2934 bp AK358477 Available Available None
MLOC_59763 1 764 bp MLOC_59763.1 Available Available None





CDS Structure of MLOC_59762






CDS Structure of MLOC_59763






Contig Sequence (9419 bp)

>contig_43892 9419 assembly3_WGSMorex_rbca.fasta
AAATTGTACTAAGCTTGAGACAGTTATTTTGGGACGGAGGGAGTACAATGCAGAGGAATA
CATTAAAGTATGAGTAGAAAGTTTTTGCGTCACTGCGGGCTATAATGCACGTATAGATAA
TCAAACAAATAATTAAATTATTTTTATGGTCAAAACTTACTTCTCCCTCATATATCCGGG
TTTGTTTTGACATGAAACGAGTGCCATTAGGGTATTTATCAACCGTCTGAATAATGTGTG
TGTCTGTGTTTTTTGGAGGTCAAAACTTGTGATGAAAGATAGTAATAATAATAAAAGGCA
CAGTGTTTGGGATTAGCAATTTTTTAAAGGAATACATGATATTGCTTTGGAAGATTATCA
ACAAAAATCACCTCCTACGGAGTAAGCAGGAAAGAAGATCTCTCCATTTAGTGGGTTTTG
GATTTTTACTTGTGTAATTTGTAGTAATATCTACTTCTAATTATCTACATGCATAATTAA
GCATGTCCCTAATTAATTATTTGTATTAATTACTTAATTGCATACATAATTGACAATCTG
ATAATTAATTGTATTAATGACTTGATTTATAATTTGATTCGGCCCTCGGTTTCTAAACAA
TTTTCACATTAATGCCGGTGTCGCACGATCCAAGTGACCTATTGAATCCCCTTTAGAGTA
GAATGTCGTGCTCAATGCAACGACATGATCGAGCATTGAACCGGTTACATGCGCGGACAC
GATGTCCTCCATGATGTCGTGCATGGCGTCTCTGCTCAAGGATGCGTGGATACATACAAC
CATAAGGAAAAAAATATGTTTGTTGTATTAAAAAACTTTTGATTGTTAATCAATAATAGT
GATAACAATGATAATAAATGCATAATATGCTATGACTAGCAACATGTTGTTAAGGTATAC
CCGATATTGTTTTGGAAGGTTATAAAAAAACAGCACCGGCCAAGCAAGCATGAAAAAGGA
TCTCCTCGTTTAATGAGATTTAGATTTTTACGTGCCTATTATGTATACGACTAGTTAACT
ATGTGCCTAATTAATTATTCAATACTAATGACCTAGTTTCAAAATTGATTTCTCATAAAG
AAAATATTCTCTCCACCACAGTGCCACGCGCGATTCCGTTTACATGTATATTTAAAATAG
CAGAGGGTTTGGTCACGTTATATTTATTGCTTCGTTAATTAGAAGTAATACTACCTCCGT
CATGGTTTAGAAAACACGGTAAAATATACGTGCATTTTCATAATAGATAAGGTTTAAGAC
GTGTTACATTTACTCCTATCAGCGAATTAGTACTCTGTTGTACTACTTCTATATGCATTC
GTAGTATGAATGATATTTCTTAACTTATTTCACAGTCAATCAATAATCACCTAGGTCCTA
GAGAATTTCCATGCACGCCTTGTAAACCGTGACGGAGGGAGTAGTAGGTTGCATGCATAA
CAAGAACCCACATGGCACGAAAAGGCTTCATGCACGAGGACAACTCTTTTAGTGATTTTG
TGAGTTACTGTACATTATCTTCTTTAATAATTAGATGTGTGAGCGCTTGGAAAGAAAATT
AGAACCAATCACGATTCACCTTGGTTGTAAAGATTTCTCATGCGCGCCTTTTAAACTGTA
ACAGAGGAAGTACTTAAATGGATCTGATTAATTGCATGCATAATTAATAGTAATTAGTTC
AACTAATAATTTGGTTTATAAATTTATTGGGCACTTCGTTTCTAAACCATTTCAGAGCAT
CTATAGCCGGACGTCTCAAACAACCTCTCATACGTTTGTGGACACGTCCGATCAATTGTC
GGATAGGAGAGAAAAGAAAGTGACACACCAGACCCTTCATATCAATCCTATATTTTCGGG
TTATCCGGAACTTTTATATTCATCTCAAATATAAGAAGGATACGAGGAATCGTGTACACG
TCCGGACAGTCCGCCACGTAGGACGCGACCTCATCCGAATCATCTTTTCCTTTTATTTAT
TTGTTTTTTTTCTTCTCTACATCAATTACGTGTAAGTGACCAAACATATAAAGAAAAGGA
ATGAAAAATATGGTCGGGCGAACGGACAAATAAAAAACGCGTCTGATCACTGTAGATGTT
TAAAGGTTCATATTTGCTATCTACTTAAAGATGTTCTTAAAAAACTCTACCCGAGAGAGA
GATTCGTCTAACTTTGACCTTTTCTTCCCCCAAGAAAATTACAAAAAACTTGTCCAAGTT
TGGCATCTTCTTCTGTACTACTCTACCCTAGGCTAGTACACGGCACCGTTGACAAATCAA
GAAGACGTGGTGTCCTGTCGAAAGCTTGTAATAACGGCAACGAATGCCATGACGTCTGTT
CTTGCTACCTTGGGACGGAGCGTGTCATCTCTCGAGTCCGAAACAAAATCTATGTTGCTA
CATGGATGGGAGCTTCTACACGATGATTTTTCGAAAGGAAGAACAAATAAATAAGAAAGA
AAGATGAAATTGCTACCGAGTGCATCTGAGAAAAAAAAAACATCCATCATCTAACTTCTT
GTGCCACTACACTTTTCGGCTACTCTCAGAACCTCATCTACAAACCGATCGCCATGCCTC
TCATATCGTACAATTTTGTTGTGTGGATCGATCTCATCTCATCTCATCTCATCTGCTAGA
CTTAGACTACTACATACACTGCCACATATAGATACATACACACTACTACCGGTATATATC
ATCATCATAACTAAAAGAAGATCAAGTGATTGGTTCACTGGAGCTTGTTGGCTCTGATGT
GTGCGATGGCCTTCTTGAGCAGCGGCCGGAACCTCTTGAGGTCGAGCCGGACGTCCTGCT
TGTCGAGGTACACCTGCTTGAGCGACTCCCACCCCTTGCTCTTCACGCCGTCGGGGTCGG
TGAAGATGGGGTGGTCCGGCGGGTACTGCTCCGTCAGCGTGCTCTCCGCCGGCGAGATCC
GGTACTCGAGGTACTTCAATCCCATGTCCCTCGACGGCGTCCGGAAGTAGCCGGCGACGA
ACTCCAGCCCGCCCAGCGGCACCACCTGGATCACCACCCCGCGCGTGGGCAGGAACACCA
TGTTGGTCAGCCCGGCGCCGTGCACGCCCAGCATGGCGTCGCACGTGTTGGCCAGCTCCG
CGAACGGCGCCACTTCGTGCGTGCCCTCGGACACCACCACCTCGAACCCGACCTTCTGCG
CCGCCCGCACGATCTCGTCGGCGTTCACGAACCGCCGCGTGCTGGCGCGCGCGATGAGCA
GGAGCCGCGGCCTGGCGCCGGCGGCGGGCACGGCCAGGCCGCGGGGCAGGCCGTAGGTGC
CGCGCATGTGCCTGGTGAAGTCGACCATGGAGTAGCCGTTGGGCGCGCGCAGCGGGTCGA
TGCTGAAGTCGGCGTGGCAGGTGAGACCGACCTGGACGTGCGCGAAGCAGCGCGTGCGGT
TGTCGGCGGCGAGGTCGACGAGGTCGTAGTTGGAGAGGCTCTTGAAGACGGGGAGGAACT
TGCCGATCCACCACATCTGCAGGTCGGAGACGAGGAACTGCACCTCCCCGCCGTACCGCT
TGGCCGTGAGGAAGAGCGGCAGGATCACGTCCGTGTAGGCGTGGAAGTAGTTGCCCGTGT
ACCCGCGGTCCGAGAACAACAGCGCCGGCACCGAGTGCTTGACCGCGCACTCCTCGTCAC
CGCCGGGGAGCGTGGTGGAGCGCACGGCGATCTCGCGCACGTGGCGCATGGCGTTGGGGT
CGACCTTGCGAGGGTACGGCTTGACACGCCACTCCTCGGCTTTGGCCGTGCCCACCAGGG
TGACCGTGCCCTGGGCGCCGTGGACGCGCACGTCGCCGTCCAGCTCGCACCAGTCGATGC
GCCGGTTCGACGTCAGGTCGCACAGCGGCTTCCACTCCCGCCTCGCCGCCGTCGACACCT
CCGGACCTGAACAACAATTTCCACACGTTGGTATTCATTCAGTTGGTTGGCCATGAATGA
TCAGGAAAAATGATTGGCATGGAGAAGTGAAGGACCCAAAGAAAATCTTTTCTTGCAAGA
GTTTAGCAGACAAGAGCTGCATTCTTCGTGTAGGACACATACACTAGACCACGAAATGAA
ATGATCAACGCGCAGGAGGGGTCTAGAATTCCGTCTAGAAATCTGGCCGAGGCATTGCCC
ACGTTGCTCTCCTCTCAAGAAAGCTGGGGAGGAGGACGCAATGGGGGTAAAAGCAGAGGA
GTGGTCCAGAGTAGCAAGGACCCTGTTTCTTTTGCTGTAGGACGAGTGAGTGATTGCTCG
AACTGGTGGAACAAGTTCCAGTGCTTGATGAAGTGTTCTTTTTTTTACCATGGACATGGA
GATGGAAGAAGAATTGCTACTAGATGCGATCCGATGAGATGAGAATGAGATGGGATGGGG
TTTGTACCTGGCTGCTTGGCAGCCTCTGGGATGAGGGGAATCTGCTGGACCGGAGCAGCC
GTGGCCACCTGCTTGGGAGCCTCTGGAACGGCAGGAGGAGGAGTCTGCTGGACGGGAGCA
GGAAGCGTCGCCGGGTCGGATTGAACGACGGACTCTGAGCCGCCATCGCTGCTGCTGCTG
CTCTTGTTTGGAGAACTGGCGGCGGCGATGGCGTCCTGCACTTGCAGCTCCTGGTCCTCA
AGAACACCTGATGACCAACCAAACACCACCAAGAAATTCAGCTTGTCAAATCCAACAACT
TCCTTTCCCCCCCAAGAACAAAAAAATTATGTGAGGCCGCATCTTATCTAGTACTAGTAA
GTGGTTGGTCGATTGGATTCTCGTTTTCTCACCTTGTTCCTCTTGCGTGCCGTTTGCCGG
TTCCTGGGACGACAGCGGAGGGAGAAGAGCGCCGGTGGCGGCGTCATCGTCCTTGGCGGC
CTCCACGGCCGCATCGCCGTCCCTCGCAAAGGTGTCGTCTTTCTTCGTGTCCAGCAGCGA
CGCATCGTGGACCAAATCTAAAGCGAAAAGGGGGGAGAAAAAAAATACACCAGTCTTTGT
CACCGGATTGCCTGGACAGAGGTTGCGTGCTAGCCAGTAGAGGCAGCGAAGCGGCGGCGG
CGGTAGCTCGAGGCCTCCTCTAGCCATGGCCGGACCGCCGGACCGGACGCGTACATACAC
AGTATGACAAGCAAATGATTTCTTGCTTACCTTGCGCCGGGGAGGAGGAGGATGTCCTCC
TGCTGTCGTCGCCGTCCGTGTCGAGCACCTCGGCCTTGCTCCCCTCCCTGGACAATGCCG
CGTCCTGCCCCGGCACCCCCAAATCTGAAGACAAGAAGAAGAAGAGGTGGGGAAAAGACA
TGCCGTCAGTAATTGAGTCAAGGTCGTCGATTGGCACAGCTAGCGGATTCGGCCGAATGT
GGTCGCCGCGGACGGATTCATCACCTAATTGGCGCTTGGAGCCGACGGCGGCCGCGCTCG
CCGGCGAGCCAATCCGGGCCTCCTGGGGGCTGACTGCGCGCACACACACACACATCGAGA
TTGGTCCGTCAGAGGCGAGAGCGAGAAGGGGAGGGAGGAAGAAGAAAGCGAATGCAGATG
CGCGTAGGGATACCGTGGGGCGCGATGTGGATGGCGTCGAACTTGGCGGTGGAGAAGTAG
GCGCAGGTGACGAGGAGGAAGCCGGCGACGAGGCCGATGCCGAAGTTGCGCGGCTCGACG
GTGCGGCTGATGGCCTTGAGCAGCCTGGCCGTGTCGTGGTGGTGTGCCGCCTTGCCGCCG
CCCTCCATGGCCGCCCCACTCCCCTTCTCCTTCTTCTTCTCTGCCTCCGCCGCTCGTTCC
CCTCTCGCCCCTTGCAATGCTCTGCTCGCGAGTGAGGGGGTCGTGTTGAGGGTGAGCGGA
GCAGAGGCGCTGCGCGTATATAGCTGTGAGGTAGCGAGAGAGCCTGACCTCACGTGCTTA
CCGCGGCACTGCGGGTGTGCGGTGACTCGTGAGCTTGGAGCTAAATGGACAGCAGAGTAA
TGTCGAGCAAGCCGGTAAGTATGTGTGAAAGAGAAGAAATCAGGCGTGTGTGCGCTGCCG
GCTTTTGTTGTCTCCGTTGATCGCTGCGTAAGTGGTGGCAAAATTGTGGCTTTCTCCACT
CCCCGTTTCGAGCTGTATTATTTCCCGTGAAGAATGGAGAGGGGTCGCTGACCAAGTGAC
TGCCGGGGCTTGTGCGTCTGACTGGATCCATTGCATGATTGATTAGTACTTACATTCATT
GGCTGCTTTGCCTTTGGCCTCGTGGCGTCGAGATGTTGAGCACCGACAATGCGACGCCGG
GAATCTCTCCCCTGTGCTTCCCTTCCCTTCCCTTCCCTTCCCTTGCAGGCCTCGTGAGTC
GTGACGTCCCAGCTCAAGAGCGTCCATGGAGGACGGTGGCCTGGAAGGGAGATGCATTAT
GAGTAGTAGCGCCAAGCTCGTTTATTTAAGCCAAAATACTACAGTACCTGGGTACATCGA
GATTCTGCGCGCGCACGGTAACCCGAATCCGTCACGATCTGCTGCCGCCGTGCACCGGGA
TGAGTTGACAATATCCGGGCGCAGCGTCTATCGCGTCACCGACCCGACCCAACCCAACGT
GCTCGAGCGGCACGGCGCCCCCGTTGATGCACTGATGATCTACGGCAGGTCCGCGTAAGA
GCACCTACAGTCACCATGTATGTCCGCGTACATATCCGGATGTGTCCATGTAAAGTCTGA
ATGGATGCACAGTCTGATCATAGCAGCTCCAACGTGGGCGATCCATTTCGTCTGTTGTTG
CCCGTTTAATTCGGCGCGGACACAAAAGTCGGCTCGACGCGTCGTCCCGAACGGATTCGT
GTCCGGTTTTCGTTCACGCGCGACCCATTTCTGGTCCATTTTCAACCCGGATTTGCTCCG
TCGTCGTTCATTTTTTTCCAGTGACTCTACGAGCTGCACGCGCCGCAACATCCGCTCAGC
AACGCCGCCACGTCCCACGTCGCCCGCAACCCTGTCTTGCCACGGGAAACCAACTGCTTC
CCACCGCGACCAAAAAGCCGCTTCGCCGCCCCGGCCAAATCCTCAGCGTCACGCTCGTCG
GACGCCGACACGGCAGCTAGCTGGTCCGTGCGCCGCGACTCCCTTCGTCGGCCGCCTCTT
TCGTTGACGCCCGCAAGGTGTTCGACAGTTTGCCAATGAACAAAGTGGACTCCGTCGATG
AGTTTTTTTTCACAATTTCCTTTACGACTCCGACGGTTCGTCGTCCGGTGACGAGGAGGA
GATATTGGCTGTCGTGTTGGTCTATCACCATCACAACAGCCAGCGGCCGTTCTTCCGTGG
CTCCATTTCGGGCCACCTCCCGACGTTGAATCACAACCGAGAGAGTCGGCATCTCCTTCT
TTGAAAGGACTACTTCGATACAACAAATCCGTTATTCAAACATCAGAAATTCCGCTGGTG
TTTCCTATGAGTAGGCATCTTTTCAACCGTATTAGAGAGGGGATGGTCGGCTACGATGAC
TATTTCGAGTGCAAAGAGGATGCCATTGGAAAATTTGGTTTCTCCTCTTTTCAGAAATGC
ATTGCCGCTGTCCAAATGCTTGCATACGGAGTGCCCGATGATCTCATTGACGAGTACGTC
CGTATGAGCGAGTCTACATGCATAGAGTCCCTGTATAAGTTCTGCAAGGTTGCTATTGCT
GTGTTTTCCCTCAGTACTTGAGAGAGCCGACTCCTGAAGATACAACCCATTTGTTGGCGA
TGAATGCCAGCAAGGTCTTCCCACGGATGCTTGGCAGCGCAGACTGCATGCATTGGGAGT
GGAAGAATTGCCCTTCTGCATGGCAAAGGCAGTATAAGGGCACCGTTCGGTATCTTGCTA
ATACCTGGAACACGCAAAAACTGTGAGAGGTGATGACTGCTTGTGTGATCAGGCACAATG
TGATCGTAGAAGATGAGCGTCCGAAACATCTCTACAATCAAGGGTTTCAGTTTCATGGTG
AGAATGTTGTTTCTGAGCAAAGAGGATCGGTAACGTTTGAACAGTTCATACAATTTCATC
ATGACATGCGTGACTCCAAAATGGTTTCGTTGAGCATATGTGGACTCATGTTGGCGACCA
ATAGATGTATCTTCATTATTCGGTTTGAAAAACTATGTGAGACATTTTTACTTTTATTCG
GCTTGTAAAATTATGCTATTTTATTCGGTTAAATCTATGTTATTTAACTATATGTTTGAA
TGCAAAAGCAATGCAAAAATAAGCTATTTTTTAAAATAGGACGGCCAGCCGGCCACGCCG
GCACATATGGATCGACGCATTGGGTACAATACCGACCCAAATTTATAACAGGGCCACGCA
AACGGCCGACCCAAAAGCACTAAAAGCGAACAAAAGCGTTGTCCATTTAAATCAGCCCGT
TGAAGTTGCTCTTAATCCCTAAATTGTCGTGTGCCTTACATCCGGTATCCAAAGTCATAC
TCCACGTGTAACGAAAAACAAGTACCTATATGATCAACGAAAAAAATAGCACCCATCTAG
AATAAAGGAACATAGAAATCACACAGGGATTCGGTGCTCTCGGTACGCGCGCATCCTATA
TGCGTAAAAAGGAATAGTAATTCAAAAAAAGTCTGAAAAATTATAAATCTTTTTTAAAAT
CAAACATGATCAAATAATGTACTCACATACAAAGTTTGGACAAGAAATGATTTTCAATGA
CTTCATGACAAAAAAGATAAAGTCATAACGACAATATAGCATGTATAGTACTTGTATATA
GCGATTTTTGCGGAATTTTCGACCACGATGCAACAGAAGTCATTCTCTGACGAATTTTTT
TATACGGCTACAATACTTGATCATGTTTGATATTAAAAAATATTTGAACTTTTTTGAATT
ACTAACTTTTTTTTGCATATAGGGTGCGCTCGCAGTGAGGTTCTCCTTTGTATTTTCCCA
TAGAAATCACCTCCGAGCTCGTCTTTCCCCATTGTTGATCTTTTTAGAGCTTGCTAACTC
TCAATCCCTCTAATGATTTTTGCTCCTTTTTATGGGAAAATAGAGAGGAGATCTAGATCC
ATATTTCCACCAATCACTTTCTCTTCTAAGTGAGGGAAATCCCTTGGGTCTAGTTCTTGG
AGTTCTTGGTGTTCTTCTTTGTTCTTCCTCTCATTTTCTACCATAGCATTACTTGTTGTG
GTAGGATTTAGGATTGAAGGACTTGGGCACTCCGTGTGCCCTTGTCGTTGCATTTGGTGC
ATAGGTTTGAGTTCTTCATGGTGATATGTGAAAGTGAAGGTTGAGAACCTTATTATTCTT
TGGTACTTGGTACCCTAGAGATTGTTCTTCGTAGATGCCCTGGCGTCCTAAAAACTTGGT
GGTGCCTTGGAGATCAATCATTGTGGTGTAAAGCTTCGGGCAAACGTCGGGGTCTTCAAT
TAAGTTGTGAAGATTGCCCCGAGCATTTGAGGTCACCTCAAAGCCATATGTCATTGTGG