morexGenes - Barley RNA-seq Database

Contig contig_43862
Source Contig contig_43862
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_43862 (7335 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_43862

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_59726	1	1745 bp	MLOC_59726.1	Available	Available	LOC_Os02g40260.1, FRAME:+2, EVALUE:4e-168, 13102.m04482 protein uncharacterized protein At4g06744 precursor, putative, expressed
CDS Structure of MLOC_59726

Contig Sequence (7335 bp)

>contig_43862 7335 assembly3_WGSMorex_rbca.fasta
CGGAGCAGGGCGATGACAACCGGTGTAGATCGACGGGCGTGCCGTCGCGCGGACGTCGGC
GTTTGAGGGGCCACCGGTTTGCGCGGGGCCTCCAGGTCGAAGGAGAAGCCGGGTCGCACC
GATGTCGAAGTAGAGGCGCGGTGGTCGACGGCGGCGGCGGACGACGCAAATCGATCTAAG
ATCGGAAAACCAAAAAGAAAACGCCGATGAAGGTGACGAGCAGAAGAGAGAAAACCCCTG
GATTAAGAGATTGGGAAAAGACTTTCTAGGGCAGCCGGTCAACACGACCGGCGGACGAAC
CCTAGGTACGGGCGGCGCGGCCCCCGACGGCGGTCATGGAAGCCGATCACCCCAGGGACG
GCGCGCAGTGCGGAAGCGGTGGGCGACGGCTAGATCTAGAAACTTGCGACAGATACCATA
TTGAACGGAAGTATAGGGATTGACGGAATAGTTGTTTATGATGGATGTATTATTGAGCAT
CATGGATGAGTATATACTGGGTACCAGACTTGAAAGGCAAAAAGTCTTTCTTAAAGATAA
GGTAGGAGACGGATTATAAATTTCAAACTACCAGATACATGTACATCAAATATATCTCTA
ACACACAATACCACTGCCAGTGCCAGCACATCCTCTCCGGCAGCAAGAGCTGTGGATTGT
GGAATGAGGAGGTGTTGCACTATATATATATATATGTCTGTTATACGCCACAGGTCCGCC
TTCAAGGAAAGCTAGAACTCGAAACAGCAATGGCCAATCACCTCAAGCGTCCCTTAGTCC
AGCAATTCTTTCTGCTCACTTCCGTTGCTGCAATCGTAGCAGGCCCCGCTGAGCCACACC
TGTCCTATAAGATACACCAGCATTCTTCCTCGTACCCACAGCCACGTGACTTCCCAAGCG
AGCAGCTCTACCATGCATACTTCGCCATCCAGCGATTCAAGAACACCATCACCTCCGACC
CCAAAAACGTAACCAGCACCTGGACAGGCCACGACATTTGCGCCACGACGAGCTACCTCG
GCTTCAACTGCGGGGCACCGCATGGACAAGCGAGTAACCTCACGGTGACATCAGTCATTT
TCGATGGCTTTGGTCTGTGTTCACCGATGCAACAAGATCTTGTCGACGAGCTTCCCGATC
TTGCACTCTTCCAGGCTTCCTCCAACAACTTCGGCGGCGAAGTCCCTATCCTCACCGGAC
TTAGCTACATGTACATGCTAGACGTCCACAACAAGCAGGGTGATCAATTTGAAGAAGCTA
AAAGTGGAACAGCAACAACACATTTAACTCAACTATGTCTCGGGAAGAACTTTTGCCCGG
GTATACGCCTTCGCCCCATTTTGAAGCCGAAGCACCCCCGCCATGGTGCCACGAGTGCCA
AGGCACTCCTGCTCAACAACAACCAGTTATCGGAGTCGCTTCCTGCCAACCTTGGCTTAT
CAAAGGTGAGCTACCTCGCCCTCGCCAACAACAAGCTCACCGGGCCAATCCCGCCGTCAA
TCGCGCAAGCGCAAGACTCCCTCCTCGAGGTAGTCCTTCTCAACAACCAGCTCTCCGGCT
GCCTCCCGAACGAGCTCGGCATGCTCACCAAGACAACCGTCATCGACGCCGGGATGAACC
AGATCACCGGCCCGATTCCTTCATCCTTCTCGTGCCTCGGCAGCGTCGAGCAGCTCAACC
TTGCCGGGAACCGCCTGTACGGGCAGGTCCCCGACGCACTCTGCAAGCTGTCCTGGCCGG
CCGGCCGCCTCGCCAACCTCACGCTGTCGGGCAACTACTTCACGTCGGTCGGGCCGGCGT
GCGCGGCACTCGTCAAGAACGGCGTGCTGGACGTGAAGCACAACTGCATTCCCGGCTTCG
CCAACCAGAGGGGCCCAGCGGAGTGCGCCTCGTTCCTGAGCCAGCCGAAGACGTGCCCCT
CGGCAAGCGCCCGCGTGGCGTGCCCCGCCGCGGACGCCCAGTCGAACGCGGCGGCGCCGG
GGGCGAGGGTGGCCAAGGACTACTCCAGCTACGTGGTGTACGCCACTCTGCATGAGTGAG
GTGACAGCGCATGCAGTAGGGACGCCGTGCCTACGTCGTCGGTATTTGCTCTTTGTATTC
TTGTATGCGTTTGGTGTGCACGTGATTGCTGTTTGTTTACCTTGTGCGTGTGGCTGTCGG
GCCTAGATCTCGGCTCTTGTACGTGTTGTGATGCTACTACAGTTTTGTGGTAGTAGTAAT
TTAATTTCGACTGTATCTTTTTCAAGGTTCAATTATATGATGTTGGAATTATGTGGAGTA
GTGTCATTGCTTACTTTTGCTCGGTTGGAAGAAAAGTGGAAAAGTTAGCGCTCTACAGCA
AAATAGCGTCACGCATCTCCAACAAACGCATTAAATCAGCAACGACCAAAAAAAGTCATA
TAGCGCGCGAAACTAGCGCTCCCGCAGCCGCACGCGGTAAACAGACATCACTCCGCTGAA
AAAACTACATCATGCGTGATTTATTTGATGTGTCCGCTCCAGCGCATAGGACAAGCGAAT
CTCGCACGCAAACCATCAACCGTCGGATCTGAAACCTTCTTGCATCGACGCCTCCACCCG
CTCCTGCCGTCGATGCTTCCCCCGCCTCTCCCCGGTGCGACCCCCTGCTGATCCCAGTGG
CTGCCGCTGCTTCATTTACCTACTCTCCTCGTCGCCGCCCCTCGAGTGCTCCGTTCCTCC
GGTGAACAACATCTGGCAGCCGTTTGCAGCTCGGCGCCCACAAGGTGTTTGATAAAATGC
AAGGTATATATTGCTTAACTTTATATTTGTAGATGAATTTGGTGCATGTTGTTTATAGTT
TTAAATTAGTTTTAATTCAAGTTTGTAGATGAGTTCGTCCTATGATTGTTTCGATGAAGA
ATTTGATCTTCAAGAAGATGAAATCTTAATGATCCTAGCTATCCACGTAAATGAAAAGGC
GAAGCATTGTGGTTCGATTTTCGGTCATCAGAAATTATGGAGAAAAGAATTGATGCCCAT
AACGGATTGATGAGGAACTACTTTTTAGAGAATCCGACATACCATGCATCCTACTTTTGA
CGCCGTTTTATGATGAGCATCAAGTTGTTCAAATACACTGCGGAGAAACTAGCGGGACAT
GGTCGGTTTGTCAGCAAAGGAGGAATGCCGCCGGAGAACTCGGGCATAGCACCTTCCAAA
AGGTGACCGTTGTTTTACTTATATTGGCATACAGTATTCTGATGGATCTAATTGATGACC
ACTTGGTCATGGATGAGAGTCAAGCTATCATGTGTGACAAGCGCTTCGCAGTTAGAATTG
TGCAAGTATTTGGTCCAGAACATTTGAGAGCTTCCAATGATGAAGACACCGCAAGGCTTT
TGGAGTTCAACAAAGCTTGCAGGTTCCTAGATATGCTTGACTCAATAGATTACATGCAAT
AGAGTTGAAAGAATTGTCCTGCTGCATGGCATGGACAATTCCACGACCATAAAAAAGGGT
TTTGCTATAATCCTTAAAGCGGTGGCTGATCATGAGACTTGAATTTGGCATGCTTTTTTC
GGAACGCCCGGATCTTGCAATGACATCAATGTTATTCAACGGTCACCACTCATGACTAGG
ATTGCAAATGGTGAAACTCGACCGGTGGAGTTTGTAGCAAATGATCATACATACAACTAT
GCCTACTATCTTGCAGATGACATCTATCCAAGGTGAAAAATATTTATAAAGCCGTTGAAG
GCACCGCAACGCAAGAAAAAACTTGATTTTTACAATGCTCAGGCGGCGGCTAGAAAAGAT
GTGGAAAGAGCTTTTGGGATTTTGCAAGCCCAGTTCGCTATTATGAGAGGACCAGTTAGA
TTTAGGACTAAAAGATCATTTGGTACATCGTCAACGTTTGTGTGGTCATGCATAACATGA
TCATCGAGAATGAGCATGGACAAAATTTAGACTATTCTCAGCAGGAGTTGCAGGAATACT
CGTGCGAGTGCGGAGGAGCGTTGGAAGGATGGTCCGCTTTGTTGTGTCCTATCATGTCAT
TCGACGTGGCGAAATATACATGATGAGCTTCAAAAGGATCTAGTCGAAGATTGGTGGGCA
TGGAATGGGCAACGTACGAGTTAATGTTATATGAATTATTTGTTGCATTGAAAATAAACT
ATTTGTTTTATTACTCATGAACTATTTGTTGTAATATTCATGAACTAATTGACTAAGTTG
GAATAATAATTGAACTGTTGATTTATTTTGTGTATGTTTGATCTTTTTGGTTCTATGTTT
GAGTGGGAAATTTGTTTGTGCTGGATGCACGCTGTAATTTAGAGTCATTGTTGTAGTGCT
ACCTGTGATGCGCTAATTTTTGCAGCTCCTGCTAAAGCTATCACACGTCCATGAGCGCCA
AAACGCTATTTTGACGTCCAAAAAATATTTAGCGCGCCATGCTACCGCGCATCTGTTGAA
GATGCTCTAAAATACGTCATAAGTGCGCTATATCGCCCTATAGCATTCTATTAGTGAGAT
ATTGTATATTGTTTTATTTAGTAAAGAAATTGCTCAGAATGTTATAGTGTGCTTTTTTCT
GTGATAAGAATATGTTTTGCATTGGAGTTACTATGTTTTGCGGAACTCTCAAGACAGATT
TTCACATCTTTTTATTTATTAAATAAAGCCATAGATGATCGAACCGATACAAAGTACTCC
CTTCGTTTTAAAATAAATAATTCAAAAATGACTCAACTTTATCTTAAACTTAATGTAAAG
TTAAATTATTTTTGAATCGCTTATTTTAAAACGGAGTGAGTAGTAAAGAAATCTTCATAC
AAATAGAAAAAAGTATAAAAATATAAAGGCATCAAACTAGCGGCAGAAGTGCCACTAACG
ACTCAACACCGAGCATGAATCTAGGTGACGCCACCCTAGCAGGTGACATCCAAAACTACT
GAACAAGACTCAAACTGGAGTCATGCCGCCTCGATAAACCATTCTCCCTCCATTCTAAAA
TTCTTGTTTTTGATTTATTTAAATATAAATGTATCCAGTCATGTATTAGTATTTAGATAT
ATTCATTTTTTAATAAAACTAAGATAAAAAATTTGGGACGGAGGGAGTAGGAGATAAGAT
GTTGTATAGTACCGAACACAGCAAGCCATCTTCGGAAAGGACCTACTCGTCGTTGAAACA
GCCCCTCGCTCCTACCAAGAGATATTTATTTATTTTAACTCTACGAAGAGATAACAAGAA
CGAAGAGTGGAGGCCGAAACTACTCCAACTAGGTGGCCTACATGGTACATCACATTGCAT
AAGTGAGGTGCCAGCTTAGGCAGTGGGGACGACATACGTCGTCAGTATTTGCAAATGTAT
TCTTGTATGTGTTTAGTGTGCATGTGATTGTTGTTTGTTTTCATTGTACGTGTGGTTGTC
GGGTCTAGATCTCGGCTCTTGTATGCGTTTCACTGCTACGACAGTTCGTGGTGGTAGTAA
TTAAATTTGGACTATATCTTGCTTGTTTCATTTATAAGAAGTTGGAATTATGCGGAGTAT
TGCAATGTGACATTGGTACTATTGCTCGGTCGCTGAAATACATGGTAAATTTCTCATATG
CTTCGGCGTTACTCTATTTAGCAAATTTTATTTATGTGGCTAGATATGATTAAATACATA
TTTTAAGAAAAAAGATTGGGGACTGCTAGGCATTCATCGGTGGATTTATAGTAATCATCC
ATCACCCTTTTAGCAGTCGATGTATACGCGTGTATCGTCCGATCACCAGCTCGGTCGCCT
TTAACCATCACATAAAATTCTGAAACAACGCTCCAGTTGCAGAAACAAGCACGCTGCTAC
GCGTCCGGCTGACGGGTTTAAAAAGTGACTGGCGGGTCTTTTGCAACATAGATTATGTTG
CAAAAAAAATTACAATAAAGAGCATGTTGCGAAAACATCCGTATATTTATTTTGTAATAG
AATTTGTTATAGAATATTTTCTGCAANNNNNNNNNTGTTGCAGAAACTTTTGCAACAAAG
GTCATGTTGCAAAAAACTTTTGCAACGTAGGTCAGGTTGTAAAAAACTTTTTGCAACAAA
AGATATTTGTTCCAATTTCTTGAAACAGAGACAAAGTTGCGAAAACTCGTCATTGCGCCT
ACTTGCAGTAGCTTCGTTGTGTCAATTGCAACAACGCCGTTGTTGCAGAAACTCTACAGA
TTTTCTCGAGGGATGGGGCTCGAGCTCGGGGCCAAACCAAGGAGAAGACGTTGGACGCCG
GAGTTTAGGACGTCCGCATCAGCACCGAAGTTGGTTTTATCCAACACAGGACACGCGTCT
GGTGGGAGAGGCGGGGGACGCGGTCGTAGAAATCCACCGGCTGATGGGAAGAGTTTTCCA
AAAAGATTCCACTCAACCAGTTGATTTTCTAGCTCCCGTCTGCCGCCTTGTTCGCTAACA
CATGTCCCACATGGCGTGTTGTTGGCTTTTGATGACTGTTTTTCCAACCTTTGCAATATC
ATCTGTGTTGTAGTAGTATCTTTCATAACATCAACTATGTTGCGCAAAAGGAGGGGATGA
AAAAATTATATGCAACAAAGCCTCTATTCTCTATTATAAAAAAAACTGCAACAAAACCTC
GGTTGTAAAAAAATAACAAAATTTGAGTTCCAATAAATTATGCAACAAGTTTTTCGTTGC
AGAAAATTTATGCAACAAGATCTATGTTGTAGAAAATTTCCGCAACAAGACCTATGTTGC
AATGATGGAGGACGCTGGTACGCAAGATCTGACACCCCGTGAGCCGACCAATCTTTTAAA
AAAGAACAGCCCACGAACGCATAACACGCCCATATTTTAACTTAGATTTGATTAAAAGAC
CATAATAATTGTCTAACATTTCAATTTTAGGAACAAAGCCGAATTATCTCTTCATTCCTT
TTCACATGCATATGATTGTTGATATCATCATAAATTCTCTTTTGTTTCAAAACTTTAAGA
TATTATGTAGCTCAAATTGTGAGTCCAATTAAAATCTGTTTTTTATTATTAAATTTGTCG
GGATAAGACCTTCAAAACTAAATCGTCAAAAGTTATCACACCTGAGTTAACTTACCACAC
TTGTGGTACATAAGTTATAATATTAGGGCATAAAAAATGTTTTTCCCAACCTTCTCCTCA
CATAAACATGCATGAGGACAAAAAACTGATATTGTTCATGATTCTCATCAATTTGAAAGT
TTAAATGTTTTGCAGCTCAAACCACGTCGATCTGATGTCGTCCAAGATTCTTACCACTTT
GACAAAAAGTGGGTAATAATTACCATAGTTTTGTCCATAAGTTGTAACGTATGTGTGAAA
GGATCGATATGGTTG