morexGenes - Barley RNA-seq Database

Contig contig_43830
Source Contig contig_43830
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_43830 (7556 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_43830

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_59692	4	5355 bp	MLOC_59692.2	Available	Available	LOC_Os03g13820.1, FRAME:+1, EVALUE:0.0, 13103.m01605 protein protein kinase family protein, putative, expressed
MLOC_59693	3	2388 bp	MLOC_59693.1	Available	Available	LOC_Os03g13810.1, FRAME:-3, EVALUE:6e-98, 13103.m01602 protein expressed protein
CDS Structure of MLOC_59692

CDS Structure of MLOC_59693

Contig Sequence (7556 bp)

>contig_43830 7556 assembly3_WGSMorex_rbca.fasta
GCTCCGGCGCGCGCCCGCCGCGTCCACGGCCACGGCGAGAGAGCACGAGGCGACGCGCAA
GCAGTCGGTGGTGCACTGGGTGATGAGCCTGCCGCGGCGGTCGTCGCCGTCGGCGTCCCC
GGAGCCGGCGCAGGAGGGGCTGGCGGCCGAGCTGAGGCGGACGCTGGGCGGCGTGCCGTC
CCGGTGCCGGTGGTTCCGGTACGAGGAGCTGTACGACGCCACCAACCACTTCTCGCCGGG
CAACCTGGTGGGCAAGGGCGCGCACAGCAGGGTGTACCGCGGCGGCCTGGCGAGCGGGCA
GCGGGTGGCGATCAAGCTGTGCCGGGCGTCGGCGGAGGCGTCCAAGGACTTCCTCCGGGA
GGTGGACATCATCACCAAGCTGCAGCACGGCCGCATCGTGCCGCTCGTCGGCGTCTGCGT
CGAAGGCCCCAACCTCATCTCCGTCTACCGCTACCTCCCACGAGGCAGCCTCGAGGACAA
CCTGCACGGTACGGCGCCACGCCTGGCCTGCATGCGACGCGCCAACTGTTATTCTGGACG
CACGACACGCTGCTGCGCCCATCAACACCTCTGCACATGTGACTGAATTCTGATCCATGT
GAACTCAGGGAAGAGGTCCAAGCCGGCGCTGCCGTGGGAGAAGAGGTACAGGGCGGCGGT
CGGGGTTGCCGAGGCTCTGAGCTACGTCCACTCCGGCGGCTCCCGGCCGGTGATCCACCG
CGACGTCAAGTCCTCCAACATCCTCCTCACGGACGGCTTCGAGCCTCAGGTACTACTAGT
ACTGCTAGTACTCTTGGATTCGTGGATACAATCGGTCTGTTTTCTGTACCGACAGACATG
GACTCTGAACTGAACTATGTACCGACGGTGGCAGTTGTCGGATTTCGGGCTCGCGATCTG
GGCGCCGTCCAGCCCGTCGTCCCTGACGCACAGCGACGTCGTCGGCACCTTCGGGTACGT
CTTCTTCTTGTGTGTGCAGAGTACAGTCTTCTTACCTGTACCGGGTCTCTTCCAGCCTGA
AGTGCCGCCTGTGTTAGAGAGTGACGAGACGTGCACCGGCCGAGTGCAGGTACCTTGCGC
CGGAGTACTTCATGTACGGGAAGGTGACGGACAAGGTGGACGTGTACGCGTTCGGGGTGG
TGCTGCTGGAGCTCCTCACCGGGCGGAGACCCATCACCGGCGACGGCTCACCAAAGGGCC
ACCACCAAAGTCTCGTCATGTGGGTAAGCCCTCCCAATCCTCCCAATTAAACCCACACAC
AAATAACCACCGCACCTTGTTACGTTGTTATCATGTCATCGTGCTCGTGTAGAGAGAGAG
AGAGAGAAAGATTGTGCTGCTGACGCGGTTGGTGTCTTTGACGTACGTGACAGGCGACTC
CGATCCTCAACGGCGGCGACATCTCCGACCTGCTGGACCCGAGCCTGGACGTGAAGCACG
ACGAGGTGGAGGTGAGGCGGATGGCCGTCGCGGCGTCGCTCTGCCTCGGCAGATCGGCGC
GCCTCAGGCCTCCCATATCGCAGGTCCGTCTCTCACCTCGTCAGAAGGAAGAAAAATATG
CCCTGTCGTTTCTGAACTGTTAACATTTGCTCGTGTGTTGGTGGCAGATACTGAGCATAC
TACGGGGAGAAGAGGACGCGACGAGCCTGGCGGCCTCGGAGCCGGACTGCGTGGTGGACG
ACGAGACCTACCCGGCGGCCAACGTGAGGTCGCACCTTGGGCTGGCGCTGCTTGACGTGG
AGGACGCCGAGTCCATCTCCAGCACCGAGCACACCAACCTCAGCCCGCTCGAGGAGTACC
TCAGACAACGCTGCAGCCGATCATCCAGCTTCGACTGAGCTTTGTTATTTTACTTTTTTC
TTTTCTTTTCTTTTTGATGAGTTTTGCTGTCTTTTATTTGAGTTACAAACTCGTGTACAT
ACATAAAACAAAGAAGGTGCCACATTTCCGGCACCGAGGGACATGATAGCTCATAGATAT
GTCACAGAAAAAACAAAGTAAAAAAGGAACCTTATGCTCTACTTCAGCAAGTTGTTGCAT
ATCATCACATGGCCTTGCTATATTTACAAAGTACCATCTGAATGAGGTGTTCATTTCAGG
GGCAACACGTTTGTCATACAACATTACAATAACCTTCAAATTCAAGGTTGTCCGCTTGGA
AACAAAAAATTAAGTCAAATAGATTAACAACACTACAGAAGGTTCCCACAGTCATCGTCC
TGATGAAACAAGAAAAATCCTGGAAACAAAGCTGGAAAACTGCCGGTGGGGGGTAGCACT
ATCTCCCACACCGGCACAGCTATTCTCCCAACATCTCCTACTTCCCCTCTACCTCGAGTC
TTCCTACACAAACCTAAAAAGGAACAACATATGGCAACTGATAGAGATGAAGGTCAGGCA
AATGAATGGCCCTTGGTTGCCATGAAAACTCCAGCTCCATGGGTGCCAAACCGTCACTTG
CCTTGCAGCTGCTGCTGATGCTGGCATCAGGTTTCTTTCCACCCCCAAGCAACCAATCCT
CCTGATCGCCGAGATCCACAGTATCTACAATCTCCAAGGAAGGTGGATTCCAGGTGACAA
ATAGATCTCGGAACTTCCTCTCTTTCTTCTCTTCCTTCTCAGCCTTGCGGCTCTTCTTAC
GATCAGACTTCGACTGCTTAACTTTTTCAGTGTTCCTGCCAGAGGAACAAGGCTCTTCTT
TGGGCAAGGTGCTTGCCTGCTGCTCTTTGATGAGGGGAGTGCCTACAGGCGCCTTTGGTT
TGTGCAAAACGGGCTGCTGCTGCCTGTCTGGCTGGTGGGAAGCAGCAACTTTTACTGTTT
CCTTCTGCAAAACCGGCAAACTAGGTGGAGGAGCATCTCTTCTGAGCACCTTGGATGGCA
CCAGAGGATCAACCTTTTGCAACGCCTTCACGGGAGGAGTGTCAATAACCTTGGCAGGAG
TGACTCTCTGTGCAGCCTTGACAGGTGGAGGAACAACTTGTCGTGTCAGCTGTGTAGGCA
AAGGATCAGCACTTCCCCTCACCTTAGCAGATGAAGGTGTGGCATTAACAGACAGCCGGG
GTTCCATCTTCTGCATGATCTTCGCTGAGGTTGGGGGATCTATCTTTTGCGTGATTTTCG
CAGAGATTGGGAGATCCACCTTTTGGGCAATATTTGTCATGGAAGAAACTCTTGGCAAGA
TCGTTGCAGGGGGTTTTACATCCATTTGTTTTGGAACAGCTTGAGAATCCCTCTTGATGC
TTTGCTGGAGACTTGCAGCCGACTTTGCCGTAACATCCCTGCGAGGTTGAACTGCATTCT
GCTTACTCAACAAGGATGAAGGTGTAGCAATTTGTTGGACAGGTGGTTGCTGAAGAACCC
TTGACCTATCCAACGTTGCTGACGGAGAATCCTGATCTCTTTTGATCTTAATGCGAAGGA
ATGTCCCTGCAAAATTATAATTCATGGTCAGTGACGCTCGCGCAGACTAAAACAAAGAAA
AAAAATAAAACAAAAAACTATTGATCCTAAAGCCTCACCATTCTTATTTTGACTAGGGCC
TGGGAGTACCACCTTTCTTCGCTTACTGCTGTCCTGAGAGCTCTCTGGTGATCCATGTAC
TGTCTGAATGAAAGAAGGAGCTCCATGCTCTTCGGAGAGTCCACTCTTCTCCAACTGCTC
AAATAGTTCTTTGGAGGCAGTTTTGGACTCTGAGCCAGCTAGGTTGGTATCTTCATGCTT
TCTCTTCTTATGACTACGTTTTGAATGTTTTGTCTCATCGCCACCCCGATGGGAAGCTTT
CTTGTCATTCCTTTTCTCTTTCTTCTTTTCGGCCCTTTCCCTTTCTTTCTGGAGCTTCAG
CCACCAGATTAATCGTCAGTTCTAAATTTAGAACAGACGATGGCAATGCAATGCAGCATA
TTGCAGTATGGTAATGAAGTTTCAAACTTACACAAGCACGCACATAAATGTAGCACACAC
AGAAGTGCTACAAGTTACAGTTAGCAGTTAATACATGAATCTTCCACAAATAATAATTCA
GTACCCTTGATATATATTTTCTTTACACAGTTAGTCATAATCATTAACACATAGTGCATA
GAATCAAGGAGCTAGAGCACATCAAAATTGCACAACTGCTAATGATGCTAGCAAGGGGGC
GTATTAGCAGTCAGAGAACAGAAAACATAGCAATTGTGCTGCAAGAAGAAGTCAATTTGA
AGACAGCAAATTCCAGAACAGAGACAGCAAATTATCAGACCAGGAAGGAAACTTTAAACA
AATCCATTGATAACTCAGATGGAATGTGTAAATATTGCAAGACTACATACACATGAAGAA
AAACAAACAAGACAGCAAAAGTAGCACAACTGGAACCACACATTAGTGACACCACAAAGT
GAGCACACTAATTGGTGCTGATAACCGAATTCAAGCAAGAGAAAGCCAATGTGCTAACAA
TTTTAGCAAGCCAGGGAAATGTAAACTTTCTCATTGCTAAATTTAGACGAAACTGCAATA
TTTGCGTTCTCAAGTGACATCTCTGCAAGGAGAATTTTTAACTGAGATTTAGTACCAAAA
CTAGCAATGCGGAATACAAATCAAGACAGTATTGCAATCAATCTGGGTACAGAATCAATC
AAACCCGGACAATACGCAACCCCTCCAACAGTTGTAGTAGGCCTGTAAAATTAAAATTGG
AATGCGCATCCGACAGACCATGTTATGTTTGCATTCAGGTTATTTCCAATTTAAGCACGC
AACCAAGGTTAGAAAGCTGGAGATCGGGCCACGAGGCTAGGTCAGCAGAAACAGGCAATC
GATATAGCCGACGCATCGGCCGCAAGGTTAGCTTCCCCCCGCATGCGATACCCAAATCGC
ACGCGCACACACCAACAGATCTGATCGGAACCAACAGGCAAGAACACATGATCCGGGGAC
GTGCGTGTTGTAAATCCGATGGTTCAACAAACCTTAGAGGTCGTCTCCACCACGGCAACG
GGGGGCACGGCCACTGGGTTTCGCACGTAGCCCGGCGGCGGGTAGGGGAAGCACCTCGAC
ATGTCGTCGGCCGGTGTGAATCCCGCGACGCGAGAGCGACGGCGAGAGGCCCCGCCCTAA
GATCGACCGCGAATCGACGGGGAAACTTCGATTCGCGGGAGGAAATCCGACGGAACGGAT
CTCGGCGGGCGGGATTTGGCTCTTGTGTGGCGGCTAGGGTTTCACGGGGAGGGGAGGGGA
ATTTTTTCAGCGGCGGCTACGCGAGATGGGAACGGAAGAAAAGGGTAGCCTCTTCGAGGG
TCCGGGGGGTGGGTAGTATATATAGCCGGAGCGGGCGGTGCCCGAGTCGTGCGGGGAACT
GGCGGGTCCGCCTCGCTTACCGACCGCGCCTCTACACTGACCCACTGACACGTGGGACCA
AAATCCCATGGGTCCCGACGGCAGCGAGAGGTAAAGGATGGAGGGCGCGAGCGGCGGTGC
GTGTGGGGCACGGCAAGCGGCGCGCTCCGATTGGCTGGGCCGCGCGGGGGCCCGCCTGCC
GGGGAGCGGGGCGGGGGTGGCGTGTTCGCGTTGAACACGAAACGTGTTTGCTGGGTGGGG
CCCCCGCGGCGCGGAACCGACCTAGAAGGCGGTGATGGCGGGCCGGCACGTGGTGCGCGG
CGTTCGCGTGGCTGCCAGGCTGCCAGCCCGGCGCGAGGCTGTGCGGTGGGAGGCCAGGCT
CGTTGCCTTCCATTTCATCTTCCAGCGCGGCTCCGGCTCCGTGTCCGTGTCCCCGGGGCG
CGCGGCGGCGGGGAGGCCGCTCGCGTGGATCTGATGAAGATTTCAGATTTCGGATTTTGT
ATTTTGGACGACGAGGGAGGGCTGCTGCCGACTTGGTTTTTTTTTTTTTTTGCGAGGCGG
CAGCCCCGATTTGCGTGTTTATTAACCTCGCGCCTGAACGAAGGTTGTGGTGGCATGATG
CGTGCGGGGGGAATCACGGGGTTGGATCCGCCGTGTTACTAAACTGTCGCGATTCAAACT
CGGGTTCTACCGTGACGTGTTTTACTTGACTGAATCGACAAATCTTCTCTTCTGCCGCTC
TCCGGAGATTTCGCACAATGCAACAAATGATTTTGTTAAAATTCGCACGAACTGTGGACA
AAACAGTACCTTTTGGTGAGTTTTGTGGACAAAAAATAGTTTATGTAAATTTCGTCCGAT
CTATCCGGTACTTTTTTTCCCTCTCTTCGTATTTACTAGAGGGCACCGATGAGGCAACTC
TAGTACAATCATCGTATTTTAGCCTCCATAATTTTTTCACTCGAGCAACTTTGGAAAAAC
ATTTTTTTAAAGCACATTTGACATCGAGGCATCGATTTCATTCGTAGTCGCACTTCGACT
TTGCAATCATAAGAATTCTATATCTATACCTATTAATAAAAAAAATAGGTATTCTTAATC
CGTAATATATTTTTATAAAAGAGTCCTACGTATTTTTACTACTCAATCCGCAATCCAATA
AAACTGGTTAGTTTCGGATTTTTTGGTCTGTCCTCGGATGGGCCGCGCATTGTTTCTGCG
TTTGTTTACACCAACCTCCTTAATTATCATTTTAAGCATAAAAACAACTGTGGAACAAAG
TAACGAGCCAGCGGCTTGGGCTTGGTCTACATGAGACCACGACTGTCAACGCACACGCAG
CTCGGTCGACGGCGCCGCTGACCTACAGACCACCGGCACGCGGCCCTCACGGTCCTGGGC
GAGCCGCTCCTGCACGCTGACGGGGAGCTTCTCGAGTCGTGGTGTGTCACTCTGGTGCAT
CACGAACACCTTGCGCACGTTGAAGGCACGGGCTAATCCATCTCTCGCTCTCGCTTGGCA
GGGTGGGCTAATGACGGCGGTGGAGAACGGCTGCGACGAGGAAGAGCAGGCTGCGAAGGA
GGACTCGAACGAGCTGAGCATGGAGCCCAGCAGCCAGAGTACCGCGCCCGCCAGCAGCGT
GTCAACCGCGCGCCTCTCCAGCTTGTCGCCCTGTTCCGACCATCAAACGAAAACACAACG
AGCAGTATTTACTTACCGGCGGCGATCGACGGCCCATGCACCCTTGCATTTGCTGATGAT
CGACACTCACGAACCTCGGAGAAAAACTGCAGTGTGAGGCCGACGACGGCGACGACACAG
CCGGTGGCGTCGAGCGCGTGCGCGAGGAGCTCGACAAGGCCGAGCTGGGGATCGAACCGT
GCAAGCCCCACAAGGCAGTCCACGCGTGCGAGGTGCGTCCCGAGGCCGTGCACGTTCACG
ACCGCCACCGCCACCAGCGCCACGCCGGAGACGGAAAGCGTCGTGCATGGCGTGTCTGGC
GAACAGGTGGTCCCACCCTCACATCTTTTGTGAGGAACCTCAGGTGAACGTTGACGAAGG
GAAACAAAGACACAACACCTGGATGGCATGCAACATGGGCAAGCCTTGCTCGTTTTTGTG
TCACATGCTCATCTGCTTTGTGTTGGGGAACGTAATAATTTCAAAAAAAATTCATACGTC
ATGCAAGGATCTATCTATGGAGAAACTAGGAACGAGCAAAGGAGTAGAGCATCTTC