morexGenes - Barley RNA-seq Database

Contig contig_437719

Source Contig contig_437719

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_437719 (2376 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_437719

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_59623	1	722 bp	AK252253.1	Available	Available	None
MLOC_59624	1	475 bp	None	Available	Available	LOC_Os08g07870.1, FRAME:-2, EVALUE:1e-33, 13108.m00810 protein retrotransposon protein, putative, unclassified

CDS Structure of MLOC_59623

CDS Structure of MLOC_59624

Contig Sequence (2376 bp)

>contig_437719 2376 assembly3_WGSMorex_rbca.fasta
TATAAGTCACCCCAACTTATAAGTCATAAGTTGCTCCACCCCAACTTAAAACTTATAAGT
CACCCACTTTTGCGTGGGTCCCACCACCTTTTCAGCTTTTATAATATAAAACAGGATGAA
AATGTGTGGTCAAGTGACTTATAAGTCAGATGACAACCAAACAGGCGTGACTTATAAGTC
ACTGGTTTTAAGTCACCTGACTTGTCACCTGACTTATAAGTCAGGTGACTTATTGAAACC
AAATAGATCCTTATGAGTTGGGGTGACTTATAAGTTAGATCTGTTTAACAAAATAAATTA
CTTTTACACTTTTTAACTTATAAGTTGCTGATTTATTTAGAACCAAACATGCCCTTATGG
AGGACAGATTTTGGTGTTTGTGATTGCGCGTGCTCTTTTTAGGCTGTCAAAAATACCCAC
ACATTTTTTCCGGTTTCCCGTGCCTCTAATGCCTACAGAACTGAGTCCGCTCCAATGCCG
TTGCCTCCCTCCTACTCATAAATTCCCCCTCCCCCATCCCCCCTCCGGGAAACCAAACCC
TAGCGCTCCTCAATCGCACATAGCACCCCGGAAATCCGCCCAGCTCTAGCCAGATTTGGC
TTTGCGCGGACCAATTCGCCACCCAATAAATCCGGGGGTGTGTCCCCTTGGGCATGGTCG
CTTGATCGCGTCCGGCCCATGGGAATGTCGGGGGCCGCCAGTGGCGGTGCCGGATGCGGA
CGCGGCGAGTACATGAGTATCCCGGAGGATGTGGACGCGATCAAGGAGGCGGTAAAGGAG
GAGGGGGAGTGCCCAAGGCTGCTGCGATGCCGCGCGATCCGGTGGTGGGCGAAGGTCGCC
GTACTCGGGATCTTCCTCGCCGGCGCCACCGCGGCCGCCGTCGTTTTCTTGGGCCCACTC
GTCATCAAGAAGGTGCGCCCTCTCCGTGTCCTCTCCTTTGGAGGTTTCCGTGTCCTCTCC
TTTGGAGGTTTCCTTGCAAAGCGTTTTTCCCCTCCTAATTTCGTCACGGATGCTAGATTT
TTCTTTCTGTTTGTGTTTTGCTCATGCTGTTCCTGTTGAGTGTTTTCATTTAACACGGTC
TATGCTGCAATTGGAACCGAGGAAGTACCTTTTTATGCAATTGGAACCGAGGAAAGGCCG
CGCTGGTACCAGGCGCGAGGAGCCTACTTGAGCCCGTATAACGAGTGCGAGAGCAGGCAC
ACATGATCTGGAGACCTCAGATCAACAAACCCCGTAGGCTGAAGATGACCGTGGAGGAAG
GCGTTGGAGACGTCCATCTAATGTACATGCCAGGCACGAGAGACCTCAAGCTGGAGGACG
GTGCGGATCGTGACGGGCTTGACGACCGGAGCGAAGGTGTCAGTGAAGTCGACGCCACCA
TGCTGGTGGAAGCCATGAACAACCCAACACGCCTTGTAGCGATCGGGGCTGAGCTTGTGC
TTGAAGACCCACTTCGCGGTAATCACATTAGCGTGCCGGGGTTGGGGAACAAGCTGTCAA
ATCCGGTTCCGCTGCAAGGCATCAAACTCCTACATCGCAGCCACCCAGAGCAGATCATGA
AGAGCAGCTCGCACAGAGTACGGCACGGTGATGGCGCAGAGGTGGACGCTGTGCAGATGT
ACTCCTCCGAAGTGTACCGCGAGCTCGGACGAAGGACGCCCGTACGGGCACGAGTGACCG
GACCAGCCGCAGGTGGGGACGACGCAGCAGTCGACGGTGGTGCATCTGGCAACGTCTACG
TTGCAAGTGCGGGCGACGCCACAGGTGGTGTTGCAGGTGCAGCGGGCGGCGCCGGCGCGG
CAGGTGCGGGCGAGGCCGCAGGTGGCGCCTGGGAGCCCGAGGCGGCACAACGCCCGAGCC
CGAAAAGGCCGCAGCCAGCGAACCGGGGTGCAGCACGAAACCAGGGGCAGGCCAAGGGCT
GCGCGCGAGCGTCTGGGGGGGGGGTCGCGGACCCGACGCCATCAACGGCTGGTGGTGAAG
AAGAGGCCGGAGGCACCTGCTGAAACGAAAACACACATTTGTCAAAGTAAACGTGCCGGG
ATGTGAACACGCGATGGGAGACAAGATCATAGCACCGATATCCTTTGGAGTTGGGAGGAT
AACCAATGAAGATGCAGGCGCTCCGAGGTCGAGTTTGTGAGGAGAGATGTCAACCACGCT
AGGATAACAGAGTTACCCAAAAATGCGCAGACCCTTATAGGAAGGTGGCGTACCAAAGAG
TAAATGGTGGGGTGCATAGTTCCATCGCGGACGACAAGGCCGAAGGTTGAGGAGAAGAGA
CGCGGTAGCGAGAGCATCCGGCCAAAAGCGGGGTGGCATATGGGCATGAAAGAGGAGGGG
GCAGACACAGTCATTGAGAGTGTGAAGGACACGTTA