morexGenes - Barley RNA-seq Database

Contig contig_43747
Source Contig contig_43747
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_43747 (8211 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_43747

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_59595	1	823 bp	MLOC_59595.1	Available	Available	None
MLOC_59596	2	2397 bp	MLOC_59596.1	Available	Available	LOC_Os03g03034.1, FRAME:-1, EVALUE:0.0, 13103.m00278 protein flavonol synthase/flavanone 3-hydroxylase, putative, expressed
CDS Structure of MLOC_59595

CDS Structure of MLOC_59596

Contig Sequence (8211 bp)

>contig_43747 8211 assembly3_WGSMorex_rbca.fasta
AGAGAGAGAGAAAGAGAGAGAGATCAGACACATAGCTATTGGTACATACCCTCAGCCCTG
AGGGTGAACTACTCCCTCCTCCGAGATGATGAAAATGGCCACCGGTGATGATTTACCCCT
CCGGTAGTGTACTGGAAAGGCTCGGGGTGGTTTTTTATTTGATACACAGAGTTGCGACGG
CCGAGCGGAAGTTCTAGGTTAACTTTCGAGGGTTTGTGGATTTATAGGTTTCAACGTTTA
ATCGCGTCAGCCAGAGCCACGACGCATCCTATTAGCTTGTGACCCACAGGTGGCTCCCCT
CTGATGGTTCTTTGCTCCGGTATTTCTTATATTGTCTAGAAAAACCATCAAAAAGTTTCG
TGCGATTCCGATAACTTTTATTTTCTGCATAGAAACAACACCTTGATAATTCTGTTGAAA
AAACATCAGTCCGAGTTAGTTCTAAATAAATNNNNNNNNNNNNNNNNNNNNNATATAAAA
GTATTGTAAATATAGGTACACTCGAGACATATCAACATCCCCAAGCTTNNNNNNNNNNNN
NNCTCGAGTAGGTAAATGATAAAAAAACTTATGAAGTATGAATGTTAGCATGGTGAATAA
TTTTGATCAAGGAATTCCATTCACTTTTCTAGCATCATAACCAGTAACTTATTCTCATCA
AACTCATTATGATAGAGTAGCAATCAATTCACATGTCATGGTTTAAACAATGCATTCTCT
TGAAACTAACAACCTATGTTCTTAGTCAACAAACAATCTTATTTTCAACAAATTCAAAGT
AAGAGCTCCACATACTCAATTGTCATATAGTCTACTATGATTGATAATACTCAAAGCATA
TTTTAGAACAAACATCATCCATAGAGAAAGATAGGGGATTAGTGTTTCGCCTCCCAACGT
ACTTATCATGAANNNNNNNNNNNNCAATAATGAATCATGATCAAATATATTTGACCGGAT
ATATATGTTTGGATCTTTCCCNNNNACATGGTGCTTGCCAACTAATATATTAAGGTTGGA
ATAAGAAGTTGAATCAACATAAAAAAGTAAATAACATAAAAGTAAACAACTTGTCCCTTC
GCAGAGGGAAGTAGAGATTTACAAAGGTGCGAGAGCACATTGTTTAAAACAAAGATGAAT
ATATTGTTTAAAAAAGAGCACATTGAAATATTTTTGAATACATGGTGAACAACTTTTTTC
ACACACATTGACCAAATTCATAAGTGCCATAAATATTTTTTTTAAATCAAGTGAACATTG
TCACGATTTATTTTAAATGTCACCGTTCTTTTTTTGAATGCTTTGAAACGTGTGAAGAAA
TTAGTGAAGATTTTGTTTTGTCAGAAACATCTTTCTAAAATGCGTGAACATTTTTGAAAT
GACACTAACATTGTTTTTAAGGATGGGAAACTTTTTTTAATTACCCTAACATTTTTTAAT
GCTTTTTAGAAAGAAAATAGCATATTTTTGAAACACATTAACAATGTCAAAAATAATTGT
TTTTGAGTGACACGATTCATTTTTTTAAACTACACCAACATTTTGTATATTGTGTAATTT
TAAAAAAAAGGTAACACAAACATATTTCTGAAATGCATGAACATCTTTTAAAGGTCATGT
ACTTTTTTGAATGTAATGAATATTTCTAAAAATCCGTATGAACATGAATTTTTTTGCAAT
GAATGCTTTTAATATTTTACGATTTTTTGGAGTAATGTATTATATATTTTAAAATATAAA
CAAAAGTAAAAAAAAGAACAAAGAAAACAAAACGTCTACCAAGTTACTGGGCCGGGTCAT
TAGGAAGCTGCTTGAGGCACATTGTTAGACAGACAGTGGTATCTCGAACCCATCAGGATT
CAAGTCCTGGAGTTTGCATTATTCCTAAACTTATTTCAGGATTTAGGGCGATAAGCTATC
AATGGAAGGAGACGTTCCCGTCGACGATGAGGCGTCTAGGGTGACTTCGTAAATCTCAAG
ATGATATGCTGGCTCAGTCTCTCGGATGTGCTCATATGGATAGGGCATACGTGTGTGTAT
TTATAGGGATGAATGTATGCGCATGTATATAAGCACTTACGCCTGTATTATGTTAAAAAA
AGATTAGACGGACCGCTACTCTGCCTTAAAAAAAGATGGACCAGCTACTGGCACAAACCA
TTTACAGGTACATTTAGAAAAAAAACTTATGATGTTTACAAATTATAAATTTAATATCAT
AAGTAACTGATAAGAAAGTGTGTGAACTGCATAAATAAAGTTTACATGCATTTTAACAAA
AATATTCACATGCTCAAAAAGAGATTATTTTTCTGTATTACAGAAAAAATGGTCCCGTAC
TTAAATGCCTAGTACCTGCCCTTGAGCATGTATCTTTCGCCACTACAACAAAAGTGATAA
TTTGTGACGCTCATTCCATGATGATTCAACCAAAAAACGTCAGTTTGTGAAATTAAGATG
ATTCTGTGGCATTTTTCCACTGAATCGTCACAGAATGTGCGTTACAGATTATCTCATTTG
TTGTAGTGCGCTAAAGGTGAAGAATAGGATTCACACACGTGCCTCATAGGTGAAGAATAG
GATTCATGAGTGTCTCAACATCAACCTTGTCCTACATATACCTTACACGAATCATATTCT
TGATTTTGATAAGAATTGTTTTGATTAGAGTACGGATAGGGTAGAAGTAAGGAATATTTG
TATTTAGTACAATTTTTGGCAAGATTTGATTTGATTTGGTTATGGGTAGGGAAAGGCAAA
TAATTTTTTGATTTAGTTGAGATTTTGGTATGACTAGATTTGATTTTATTGTATTAATGC
AGGACATGTTTTCGAGAAAGTACCAACTTGGTTTAGATTATTCCAAATTACTCTATTTAT
GTTGGTTTTTATTTTGTGCAGCATCAGTTAAGATTACCAAAAAAATTAACTGGAAACCAA
AGAGGCGAAGTGAACCTACCAACTCCCTTTTAATAGTAGATACAAGGAGTGGACAAAATG
AAACTGCATTAGTATATTTTCAAAAAATATGCAAAGATTAGTTTTTATAACATGTGAACA
TTTTTTTATATTATTTGTGAAAGGAGGCAAAAGATTTGCCTCACTCATTAATTAAGAGGG
AAATTTGTGTTACAACGCTCATCGTGTTACAACTCCAATACAAAAGGTCAACTCTCGTGG
CATCACGGATCCTAATTTCTTTGCACCCGCGATGACCTAGGAGGTTTGGGCATCAATCTT
GATGTTAGCAAGTAGAATCGTCGGTGGGGCACTCTTTAGATGGAAGATGCAAGCGTTCCA
AATTCAAATTTATAGCATAGAGTTCTTAGGAGACAATATTTAGCTGGTATAAATATGGTT
TTGCGTACCCTTTATGAATAACATTTTAAGTTAAGTTGGACACCTTTATGAAAAATATAC
ATTCTGTCAAATATACAACTGAAATAATATGTCATAGAATTTGTGGCAAAACTATTTCAA
ACTAAACCCTTAACCTGTTGCCCATTGTTCACCTATGTCCAAAAGAATGTTCATGCGACC
TAAAAATAATTCCATAAATGTCAAAGTTCAAAACCCAAAAATTGTGAAATATCTTCAACC
TTCCACGAAATAAGTCCATTGTTTTAAGTACAAGCTTCATGTAACTTCAATGTTCCTATT
AAAAAATATAATATTAAGTGGTATAGACAGGCAAAGAATAAAAACTATGTATTGAATAAA
GCAGAGAAACAACTCCACTTTTTAAAAAATGTTTTTGGGAAATAAAACCAGGTATTGAAC
TATAAATAAAGAAGAGAAATACATCCACTTATAAAATCCTTTATTTCCTTTCAATTCTTA
CAACTAGTAGATATAAATCATTCTCAAAAAGAAGAGTAACTACAATATCTTTTGGATAAT
TCAACAGCAAACTTCTCCTGGTCGACTCCATCATGATGCCCACGCCGAGATGCAAGCACC
TCGTGATCCTTTTTTTCAACCAAATGAACTAAATTATGAAAGATGATGATAATTTAGTTC
ATTTTGTTGAACTAAGGAGGATCATAGATATCCTGAGCATTGCAGATTTGCATCGTACGT
AACACACACAGCCAGAGGTACAATCGGCCAGTTAGAGCAAACTCCAAACGACCAACAAAA
CAGGGACGATAACATGCAGAGCTCCTACACGCAGTGGCCGATTGGGATGGTAACAGGAAC
TCCAAACGACCAACAAAACAGGTCAATTACGGAAAACGCAAATGGCAAAAACAAGTCATG
GTTTCTCCCCCTTGTCTAACTAGATTCTGAAGGGTTTTGGCACGGCCGTTGTGCCTAGGG
GCTGAAGGCTGAACCTGATAAGTTTTTGTTTTTTTGAGAGACTGAACCTGACGAGTGGCT
TATGTGTCTTTCGTTTTTGTGGCAAAGAAAATGGAGGTAGCACGCTCATTTTATCCAAGA
AAAAAAAAACCTAGGTTCTGAAGAGCTCCAGGCAGTGCTCCTGGTCCAAATTCCTACTCC
AGAACTTCTTGTAGTACTCATCGTAGGTGTAATTTCTGTAGACGGCCGGTGTCTCGGCCC
CGATGAGCTTCTCAGCGGGGCCGAGCATGACGCTATTGCAGGGGCAGAGGAACGAGGCAA
TGGACATCCTTGGCCTGTCTGAGTTCACAACAGCGCGGTGCCACACACTCCTATATCTCC
CGTTGCTCAGCGCCTGAAACACAATGGAAATCAGTTTCAGTTAACCACCACTACAGTCAA
AGTCCACAAGTTCTGAATAGGGTATACACCATGTGCATTGCATGATGGCGCATCGAGGCT
GGCGTAATCCGATGCGTCATTGGTTATGGGCAGTTCATGTTTGCTTACACTTGTTCTGTG
GTCGGTCAAGGGATTGTCTTGATTGTGCACGTGGATGCAGTTCTGGTCCAGCAGGTCCAA
CAATATTTTACTGAACTTGTGGAAACTTAGCAATGTGTTCTTCTACACCTAACTAGGCTG
CGAACATGGAGTACACATGGAGTAGCCTAGTTGGGCCACTGATGTTTGTTTACACTTCTT
GTGTGCTCCGTCAAGAGATTGTCTTAATCATGTGGATGCAGTTCAGTTCAAGCAGATCGA
ACAATATTATACCAAACCTCTAGACAGTTAGCAATGTGTTCTAAAACTAACTAGGCTGCT
AAACTACAACGATCGATATGTATATATAACACGAACACATTCGAATACTACAACAGATCG
ATCTGTGGTTCAGAAAAAGAAAACATATACTTGGTTCGTTACCTGCAGCTGGTCCCCAAG
ATTGATGACGAGAGCGTTGGGCCGCGGGTTGACGGCGATCCACCGGCCTTCCTTGAGCAC
CTGTAGCCCGGCGACCTGCTCGTCCATCATCAAGATGGTGAGGGCGTTGGGGTCCGTGTG
GGCCGGGAGCCCATATGTCAGCTCCGGCGAGGGGCACTTGGGGTAGAAGTTCACCGCCAT
GTGCTGCTCCTGCTCACCGAGGACCTTCTTGATATAGTCCTGCTCCAGCCCTAGGCTCTC
CGAGATCGCCGCGTAGAGCCGGAACCCAAGATCCCGGACCTCTTTGCAGTATGTGCTCAT
GACATCCCTGGTTCATGAAAAACGTGCCAGACTGTTGGTTAATCATCTGTAAACCTTGCA
AATTAGAACCAACTTTTTTTATTTCAAAAAAGGCGTTTTTATTAGCTAAAAATGTAGCAT
CGAGCGGATACAAGCATCATGAACACAAGTACTCTCTTTTTTCTGATAAAGATGAACAGA
AGCGTTTAGCAAGATATTTTCATTCTCGCATGATTTAGCAGCCGATTGTCGCTGTTAAAC
ACTATTTCGTGTGGACATGTCATGGTACTAGTGACTGTCTTGATCTCGGCCCTACCGTAC
CAAGTTCCTCTGTCATGTCCATCCTCCAATGACATCTAGTGAAACCAACCCTATCCCCAC
ACCAACAAGTTGCGAGGTGATGTCGGCGTCGTCTATCATCAACGAGATCTAATCCCGGAT
CCTTAGCAGGTGAAATGTTCCGGGACGCATCATGTGAGTGTGACCACAACCTTCCATCAT
GTCCTTCATTGTGATGTCATGTGTTTTTTCAGTTTGAATTTTTTTAATTGAAGTGGTTCT
TATTTCATTGTTACTTTGTGGAATTTGTTCTGTTTCCTTGGTGCCCATGCTGCAAATTGC
CCCCTTCTTTATAAGCAAAGAAGCGGAAGAGGCATATATTGACAGGTCACACGAACTGGT
CAGTGTTCCCTGTTGCCCTCCCGCGCTCCCCCACATTCACGTTTATGCCAGATTCTTGCA
CGACATTAAGGTACGTGGTGTCATTGTAACATGGACCACATTCCATTTATTCTTCCACAT
TTGCTACTGTCTTTCTTTGCCCTGAACTAATACTTTTATGAGTGCAAGAAACCCTGTTTG
TCTGTCTCTCTGTCCTAGAGATGCCTTCATAGAGTGCAGCACATGGACAAGCCGTTGGTT
GATCTTTATTCAGGTACATGGTATAGCTTGTTAATAGTTTGGTACTGCGTACAGTATCGT
TTGTTAGCAATAGTTTGGCACTGTGTACACCGTCCTTGGCCCATGTACAGAGCATAGTTT
GTTAGTTTGGTATATAATACATCATTGGTTGTTCCAGGTACAGAGAACAGTCTGTTAGTT
TGTTTGATAAGTTGCTCAGTCTCGTGACTCATGACAAAAGTGCTGGCTTCCTTGTCTGTT
TATGGTTAAATCTAGGAGCGAAACGCTAAAGAAATTAGTAGAGTGCCTTTGGCATCAGTA
CTCAAATTAGTAGTGGTGTGGTGGCTTTGGCATCAGTGAACAAAATATTTGAAAAAGGTG
CGTTCTTCTGCTAGCTGAAGGAAGCTTAGGTAATGCTGGAACATTGTCAACTATACCACG
AGTAGAAAGGTAGCCGCACCAGCGACAAAAATAAATTCAGAATGGATTGGCACAGCTAGT
GCTGGTGCTGGTGCAAGATAATTGAAAGTAATTAAGGAAAGTTACTTTTAAAGTGTTTTT
TAGAGTAATCAAATTTGAGTACTGATTTGGCACCGTAGGAATGAGAAACACAAATTTCGT
TAGGGTGCTCTGTTTTCTTTCGGTGCTGGAGCAAAGGATGAAGCTACACAAATTCTGAGT
ACTTCTTTCGGTGATGAAGAAAGTGTAATGGCGGGAATTGGTGGAAAGTACCTGAAGGGC
GGTGGATTGGCCGGCCACTCCGGCACGAACTGGTCGAACGGGTGGCAGTGCAGCCGCAGG
TAGTCGCGCCAGTTGTGGACGGTCTCCTTGCGCACGTTGAAGCTGGTGGATAGCCGCATC
TTCTTGGCCGGGTCGTCGGAGTAGAGCTTGGCCTTCTCCTCCGGCGAGAGGCGGAAGAAG
TCGTGCGCCACCGCCATCGCCGCCCGCATGGCCTCCACCGGCAGCCCGTGGTTGAGCACC
TGGCCATCAGAAACCACGCACACCACGCGAGCATGCACTGTGAGCGAAAGCAGAGCAAAG
CCATTTGTGGCGAGAACAGAGCACCGTGCAAGTGAGACGGAATGGGAATCGGAACCTGGA
AGAAGCCGTGGGAGCTGCAGGCAGAGCCGATCTGGGAGACGACGGCGGCGCGGTCGGGGT
TGGCGAGGTCGACGACGGGGATGTCGGCGTCGGGCACGACCTCGTGGAGGCGCGGCCGCT
CCGCCTCGGAGCGGACGTAGCTGTGGGGCAGCGTGTGGTGCACGGCCGTGGAGATGAGCT
GCTCCGCCATGCCGGCGGAAGGACGGGGGGATAGAGAGAGAGATGGAGAGGTGCCACGAT
GGTGGAGCAGAGGAACGGCCGTATGTAGAGGAAGGAGGAACGCCGCGGCAGGGTGGGTTT
GAGCAGGCGGGGGGAAGTCGGAGGATTTATGGACGAACTTCACGACTGATTGCTGAGGCG
ACGCGGTGATGGGTTGACCAGAGAGGAAGGGGCTCGGCGTCACTCACAGCCAAATCGCGG
GACGTCATCGGGCTGGCGACAGGTGACGTACCTCCACCTCCACCACCGGACCGGACGGAT
GGCGAGCCGCGACCTGTGGTGCGCCGTTTGGCGTGGCAGCGAGGCGCATACGAGCGGCGC
GTGTCGGACGTAGCCCATCCGGACCCCCCGCACCCAAAAATTATGGACACTTTTTTTTAA
TTGTTTAGATTGCTTATCATTGCTTATCACCTCCCACCGCCATGGACGACG