Map Locations of contig_43734 (9342 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_43734

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_59580 3 1986 bp MLOC_59580.1 Available Available LOC_Os09g12560.2, FRAME:-1, EVALUE:0.0, 13109.m01137 protein ferrochelatase-2, chloroplast precursor, putative, expressed
MLOC_59579 1 409 bp None Available Available None





CDS Structure of MLOC_59580






CDS Structure of MLOC_59579






Contig Sequence (9342 bp)

>contig_43734 9342 assembly3_WGSMorex_rbca.fasta
GCCCGGGCCGGGCGCCGGTCGCCGCGCGCGCCGCCCCCCCCGCCGGGGGGGCGCCCGCGG
GCGGCGCCGGGGCCGCGATGGAGTCGGCCGCCGAGAAGGCGGTCAACCCCTCCACCTTCA
GCATGCCCGCCACCACCGAGAAGAAAGATTAATCCGTCGTCGTCCGTCCATCGCCGCGCG
TAAGCATGAGTTCTTGGGTTAACCCATCCATCGATGCATGGGGTATTAGTGCCTCGTCGT
CCGTTTCTACGTCTCTAAAACTTGTAATTAGTGTCAAAGTAGGTTCTCAGTTTGGTAGCA
GGTGTTTCGATCGCGAGCACTCACGGAGTGTTCCTACTTTTTTTTTCCATTTCCTCGTTC
TTAATTTTGTTGTCCCTGTAAAGAATACTCCACTAATCTCTACTTCTCTAATTTATTTTC
CTGAAAATATGTAAGGGTTCCTCTCCTGTCGAAACTGCATCCAGCTCGTCCCTTCGTCGT
ATCTCAAATATCTTTGGTATCCTATAATAAATAAGAAATAAAGTTACTCAGATAATAAGT
GTCACACGTCAGGTTAGACGTGACACTCCGGCCCTGACGTTTTTCGATGGCAATTCCGTT
CATGTAAGGAGGGTAAAATTCAGTGACACACGACATGTTTCTATCAAAAATAAACTAAAA
TATGAAAGTTAACAACTACTCCCTTCGTTTCTAAATATAAATCTTTAAAGAGGTTTTATT
AGTGGACTACATACGAATGTANNTAGACATACTTTAGAACGTAGATTTACTTATTTTCCT
CCGTATGTAGACTCCTGGTGAAATATCTTAAAAGATTTATATTTAGAAACGGAGGAAGTA
AAATTTACATCCTTGAGTCATTAAACTTGCCATACAAAAGTTTGAAGTTGTCATCTACTC
GTGTCACACGTCAAATGCTTACTAGGGTATAAGTTATGGTTTGTAAACAAATAAATATCA
ATCAATATCTTCTTTTTTGTAACCCAATAAATCATACTTTTTCCGTTTCTAAATAGTATA
AGACATTTTAAAGATTACACTATGAACTACATAAGAAACTAAGTAAGTGAATTTACGCTC
TAAAACATGTCTATATACATTCATATGTGGTTTATAGTGAAATCTCTAAAAAAATTTATT
TAGAAACGGAGGGAGTACCAATCACGGAACATGAATATTTTGTCGGTTTAAGAAATGGCA
GAATATATATTTTTTACAACCAAATCATAATTTTGTTTTCCTATTTGTTTTGCATCAAAA
TTTGTCTTGTATGCTCTTTTTATTGTGTTAAAAATTATTCGACATCATAGCAATACACAG
GCACATACTAGTTTAAGTAAAGATGGGTTTGCCCGGTTGGAAATACGCTTGGAGCATTAC
TCCTTCATTGATTTTTCTATGGTGTGGACTAAACTTGTCCTCGCGCACCTGGCATCGATT
AGTGCGTGTGTATGTACATAGACCAAATGCTTGTTTCGATCTGATCTGAACTAAATTGCA
TCAATCGACAAACACTATGTTTCTTTTCTTTGCAACCAGTCAGGCTGTGTTTGGTTCAAC
TTTTGTATCAACTTCTGCTTTAAAAAAACTAAAGGTAATCAAAGGGGTAAATGTTTAAAG
CAGCTTTTAAAAATCTGCAGTTTTTTTCTAGTGTAAATTTTAAAACTGGGAATACCTCAA
TTTTTCAACTTCCAACTTTTTTACAGCAGCCTTTTAAAGATCTGCAGCTCAACCAAACAC
AGCCTGATCCAGCTGCGGATTTTGTTTCCAGTGAACGTCAGATTGCTGGAACAGCTGGCC
CAGGCCACTTGCATCCCAACCAAAAATAGGGTACCTGAGACTGAGAATCACATCACAGGT
CCAGAGAATTTGGTGGTGCTTAATATTCACAAAGATCTGCTGACGCAGGAGCTTCAAAAT
GTGCTAGTGACTTGACATGTCTCTAAGACACTCTTCATGACCCAGCTTAGGTTCCACGCC
TGTTACCAGTATATCTCTACTATTTTCTGTTTTGAACGTCGAAAAAATGCTTGTCTTGCA
TAGCATTTTTGTTATTTTGTAAGCTGTCGTCTACTGCACATTTATAATGTGCAGGAATGA
TAGTTGTGGAATCACCAAAAAGAGGAGCAAAAATTCCCTGCAAAAATAAAACGTTTCCGA
AAAACAGAATAGAAGAAAGCTACTAAAAAAGCCCAATGGAGTGCTTCACATTCTCCAAGA
GAACAGGTACAAATACATATGCTACCCTAGCCAATGTCCTATACTCCCTCCGTTTCAAAA
TAAGTGTCATTGATTTAGTATAAAAGTTGTATTAAATCAGCTACACTTACATAAATGACA
CTTAAACAAGTGCCGCTGATCAATGCGGAATACGAACATTTAAGAACCTAAAGAGAGGCT
CGCATAAGATTAAACAAAACTTATATACGTTGCTAAAGACCATATACTCTCTTTAAGCAT
CAATATATAATTAAGCATCTATCATTATACATGCAGGTGGTACAATGACTCGTTCATACA
ACGGGTAAATGCTTACTCACCATGTACCCCTGTTTCTTATAGAAAAACGAAGTACTTATG
ACATTGTTGCTATGTTATGGGCAAGACATAAGTGAACAAACTCTTGCATTTTTTTCTCGG
CCATAAATTATATTGTTATTATCATGGCAGTCTACCACAAAAAAAAACAAGTTATAAATT
ATTCAACGGTAAATCTATATGGTTTCTAGTTACAATCACCAAAATGGTTAACCACGTCGC
ATCGATAAAAATAAGCAGCTCACTGAAGAGTGTTCCGGAAAGCAGAAACTAGCCTCGGCG
ATAACAGCAGGAAGAAGGCCAGGACCGAGCCCAAGAACATCTTGGTCAGATAATGCATCA
TGTCCATGTCAGAGTCAGTATCCTTGACCTTTCTGGTCGCCATCGCGGAGGCAGAGGGAA
GGGCTTCGACGACAGCGTCAGCGAGGTCCGAGATGAAGGATGAGGTGCATCCAAGAGCTG
GAACCCTCCCCCAGTTCTCAATGCCCGACTCTAGAGCCAACTCCCTGTACTCCATGTCGA
TTTCTTCCAGTGTCTCAATATGCTCGCTCACAAAGCTGGATTTGATTTTAGCAAATAATG
TAAGCGGTAGTCAAAAAGGTTGCATGGAGTAAAAAAATAAAAAACAAACATGGTAACTGA
AAGACAATGATGTACTTTTAACTGTGCATAACTTGAAGATGCAGCTTCGACTTAGATAGA
CATATATAAAACCAAAATTGTGGTGCGAGAATGGCCACTTTGACATATTAAGATTGATAG
GAGCAAACAGGTACATGATGGGAAGTTCAGGTACAATTCACATAAGCACATAAAATGCTA
AATTAAGATAAAATAGAGCTGGTCAAGTGATGATGATATTATAATAGTAGGAAATAGTGC
TACAAAAAGAGTAATAAATGCACTTGGAATTGGTTCAGGCAATAAGTGTGAACAGAAGTC
CACAAAACCAAAAAAACAGATAAAGCTGCATCAAACACCCTTATTGTTGTCCTAAAAATA
CTGAACTGGTATAGTATAAATGGTAAAGTTGATGATTACCTTACTGGGACAGCCAGGAGA
CTCTTAACACCCTTTTGACCAAGTTCAACTAAAACTTCATCAGTATATGGCTTAAGCCAT
TGAACTGGTCCCACGCGACTCTGCCATTGCGCAGAAAGGTTAATGTGAGAGTATTCGGTA
AAGAAAAAGGAGAAATAAAAACTGTGCAATGTCTTCCACCATGTAGGTTTGCAGGGTATT
ATGGTCAAAATTTGGTTTCTAGCTTCTAAGTACAAAAGAATAACATTTATATCCTTGAAA
TTTCCTAAAAAATGTTTTCATAACCCTTAACAGTGGTCATAAGATAAGTATTTATTCATC
ATTTCCCGCTTACCTGGTAGGCCAGAGTATGGTCATTCAAGGTTCCTCTGGATTTCAACT
CCTCCATGATCAAAGCAATGCAGTCTTCCATCTGATCTCTGTATGGATCTCCAGCATCCT
TAACATAGGTAAGTGGTACTCCATGTGCACTGAAGAATATCATAACCTGCGAATTATGAA
ACATAACGTCAGAATGATATTACCTTCTATTCATTATTTATTCAACAAAATTGCACTTAC
AAAATACATTTAATTTCAGATTTTAACATACTCTTAAACTTATAAAATTATTCATACTCA
AAAGTCCATATAAGTTATAAATCATAAAATATTACAGGGATATCTTTTAAAAAATCCTGC
TGACATAGCTCTCCTGTGCTCAACCAGAAGAATAACTTTTGTGGGTATTACCGCTCAGAT
CTAACCAAATAACCAGAAATATTGTAGTGTACAACATCTGCTAAGAATATTACAGAATAC
TGCTCGAAATTAGCTGCATCTTTCTCTTTGCAGATCATTTTTCAGGTGCCTAGCAACAAA
AATAAGTGATTGCTAAGCTAGTGACTGAGTAAAAGTGTAAAAGTCATAGTTATATTCCTC
ACTTCTACCCAATTCAGTTAGAAGTAGTTGAAGTATCATTTCCACCCAATTCAGTTAGAA
CTAGTTGAAGTATCATTTCCACCCAATTCAGTTAGAAGTACTGGTAACTAGGGCCAGACA
CTCAAGTATATTGAGCGGGGGCAAATTACTCGAGTGGGGGCATTTTCTCTGCAAATTAAA
AAACTGATGCATCTTTCCTAAAAGTATAGATAAATTTTATTGGAATATCAAAATTTGAGT
GGCCCCCATTGACCTCAATGTGGCTCCGCCTCTGCTGGCAAGTAATGCAGTATGCTATTC
TCTCAAATGATGTGGTAATGGTTACACTGAGACTATAAATACAAATACATCTAATGATTT
AATTGCTACTTTCTGTCCAGACTCCAGAGGAAGGGGCATATAAAGTACAGGCCCAAGGAA
ATTTCTATATGAAAGATGTACAACATACTGAATGGCTATGCTGCAAGTGTGCAACTAACG
CTACAGATCCACAACGACCAACAATACGTGAATTTTTTAAGAAACCCAAAACAAAGGATG
CGCAAACCTCTTCAGGATTCGAAAAAACAGATAGTTCCTTCTCAATTAAGTCAGCCATTG
ATTTCACATAGCCCTCGCGCTGGTACCAAGATTCAATAATGGAAATTGGCAAGCCAGCAA
AGTATGGATCTTCCCTGCACGAATGTCGCCGTATAAGATTTTCAGGTTCTACATAGTCTG
AAAGATGAGGTTTCATTAGAGAAGATAATTGCCTACTTGACAATGTTTTGGAGAACGCGG
ATGCTAGATCCGCTTGTTGATATGGAGTATTGAGGGTATAGTGGAAGAACCACAAGCTTT
GTGATTTTATCCTTCTTAATCTATCATCAACCAAAATAGTAGAAAACGAGTAATCGTCAG
TTAAAAACATGGAATCATTTAGATAAAACCAAAGTACAAAATTCTTGTCCCTGAAAATGT
AATACATGTTGCAAGATAGTCAAGATCATACAAAAAAAAGTTAAATTCAACAAAATTAAA
ACACAATCATATAAAAGTGAAAATAAGATGGACGATGACAATGAGATATCAATCTAGAAC
AATTCTATGAGTTAACTACCATGGAAGAATAATTAAACAAAAAAACCAAGAAACTATTGT
TGACACTTAAAGGGAGAACAAAAGGATTAAAGGCCTTTAAATTTGGTTACAGAGGAGGTT
TTACCTGATCAATGGCTTCTTCGGTGAATGGGTACCAATACCGCATTCCAACATAAATAT
CTGCTTCCAAGTTCTTACTTTTTAGTGCAACCTTCAAAGCATTTGCCTGAAGACAAAGTA
GTTCCGCTAAGAATGTGATAAATCTATTTTATGAAAATAAGTAATACTGAATATGATATG
CAACTATGGTGAAAGGTACAGAGTTTAACGAGTTCGTGAGAAGGTTGCTAAATCACAGCT
ATATAGCTGTTAAACACACACACAAAAAACAGAGCGTGTTTAGACTCATGAACTTTTACC
TGCTCGTCGGTAATTTTCCGCAGAGGTGATCCACCACCAATTGAGGCATACCCCTCTTTA
CTCTTAGGAGCTCTAAAAGTAGATATAAGTTTGGCCAGTGGTCTTTGAAGAAACCTGAAC
AGCCTAGGGAGTCGAATGATATCCTGGGTAACAATTATCAAGTCAAAACTGAATTACTCG
GTTAAAAGTACTGAAATTAAACAATAACACAAGATAATTAAGAAACAGATAGGGCTATGT
GGTTCGCATTGGAATAACTACCATTCAAAGAACAGCCAGAGACAACATGACTTGTGATAA
ACAAGAGACCATAGACTAAGATGATGAACTTTATACTCTAGAGACTTAATTCTCTACTAT
CTCATCCAAAATAATGCATGGCTCTCCTTTTTAGGGCTTCTTCAGATATACCATGGTCTA
CTCAATCTCTTCAGATGGACAGAGAATTTGAACTTAAACATGTTTCAATTCAAAGCGAAC
AGTTCCAGTCCATCCTTATCCAAATAATGAAATAATCCTGTATAGGGAGAACATGATCCC
TCCTAAGAAAAAAATCCCATGTATCTAAAGAAGTTAATCTCTATTAGTGAAACAAATCCT
CTGAGGGGGTAAACTTAACTAAGAAGAGGAATAATCATTGGTTACACATAATTAGCAAGA
ACATGGGAAGTTGCATTGGAATTAAAATTATAAGCATGTGGTATGATCATGACTTACTGG
ATCAGCGAAGAGGTTGAACAAAAATGGTTGAACATCATTGAGGGTCTCTGGACCACCAAG
ATTTAATAAGAGCACTCCAACCTTTTCTTCGACGGCATGTGAAGATACACCTTTGACATC
TTCATCGAAAGTAGTACATACATCGGTAGAGGTGGATCTCACAGAAAGATGGTGCTGATG
TTTAAGTACTGGACTTCTGTGAACCAAACCAGAGGTTCCCCTTGCTTTTCCACTTGCTGA
CAACAGCAAGGGTTTAGCCTTCCCATGCAAGTTCTGCTCACATTTGGTAGAACCAGCAAG
GTTTGTAGAACATCTGACTTTACCACATGACCTGTCAACGGGTAGCACATTTAACACAAT
AAGATAAAAAAAAAACAAAGGTTACACTGTATTTCTCCAGGAGAAATGTCATGTGAGTAT
AAACTTCAGCACATCTCAAAATGCAATCAGAACCTAGATCGATCTTTCAACATTATGCCA
AATTTATTGTGAATTCAATTTAAACTATCTACTGACGGCAGATTTCCTTAAGCAATATTA
ATCACTAATTGATCAAATATATCTCAGAAATCATGTCTTATAAACTCATGAATCTCTGTG
TTGTACACCGATCAACAGGGCAGTGCATATTTTCAGGATTAATCAACTTTCTTACAGACC
ATTAGCACTCTGAGCATTCTTACCAACCATTTGATCCATAAACCTGTCTCTACGTTCCGT
CACCTCTAATAAGACAGTTTGATTTTGGTATGTACAAACAAACATTAATATTACTCCATC
ATGTGTTGGAACTGTGCTACTCCACGGATGTTCAGAAATGAAAAAACTGCTCCCTCACAG
GTTTCAGGAGCCCCAAACAATTAATTGATTCCAGGATTCGCTATAAGATCCCCACTCAAG
AAAAAGAAGAACATTGTAGCAAGTGCACATTTTTTTTATATATTGAGTTTAGTTTTGACT
CAACGGTCGCACACCAGAGGCAATCGGATTTTGGTGCCAGATCACAACTGAACCATCACA
AAATTCCAGTGACTGCGACAGCACCATAACAAAAACCGAAACCCCCAACGGAAATCTAGT
TCGTACCAGCGGCGGCACACCGTCCATCCAGATCAGCGATCACAGATTACGAAAACGAAG
CGAAACAAACCCACAAACAAACACATGAACGGCGAAAAGCGAAGGGCACTCACGTCGTGG
AGCCGCTCTTCCCCAAGAAATTCCTGGAGCGCCCCAGATCAAGAGCCCCCGAGCGGACGC
ACTCCATGGAGGACAAAGCGGGGCTGGTCGCGGAGGACGGAGGAGATCTGCGGCGGGTTG
TGACTCTGGCGTCTTCTTCCCCTCTCTCCTCTCCCTTTCTGGAATCAATGTTTCTTCGCT
TCTCTGTCTGGGTCAAATACGGCAGCGAATCGGCAACTACCCATTCCTTCGCTCACGTTC
TTCCACGGAGGTCGTAGGGCCCACACGGAACTGAGCGCACCGGATCCCACCGCGCGCTAA
TCTTGGAGCAGGTTTCACTTACTCTTTTGTGAAACATTTTTTAACAAGAAAAAATCATGG
AAATAAAAAAGAAGACACACATGAGGTCTGATGTTCCTGACTAAGATGGTAAGAGCAACT
CCAACGGACGCGTTAGACTTGGCGCGCGTGAAAGAAAATGTGTTTTTCGCACGAGCACGG
CCGGTGGGTGCGCTTCAGCACGCACGGGAAAGTTCGGCGCAATAAAAAAACTACGCGCGC
GCGTCAAGCAAAGAATATCATTTGTAGCCATCTGAGCAAAGGTCGGTATGGCAGAGTGGG
TGCTTTGAGAACTACAAAGCTCATCTAGGACAGGCTGTTCAAAGTCAACGAAAGAGTATC
TACTCAAAGTGACTCACGGGTTGATGTTCTTCGCAATCTCTTNNNNNNNNNNNNNAGACT
CGATAATGAAAATTGTCAACAAACCTTCGATCGCCTCACTGATATCTCCAATGACCTACA
GGCTCTTGGGGCCAATGACATCACCGACCATGAGGTGGTGAAGAAATTGGTGAGATCTCT
TGGTCCTTCATTCGATACACTAGTTTTGATGATTCAAGAGTGTAGAGACTACAAGTTACT
AGATCCTGCTGGTATTCTGGAGACTCAATACTCATGAATTCCAACTAGCTGAGAAAAGAG
ATCTCTATGGACCAAGCTATGAAAGATCTCGTGTGCTGAAGGCAAAGGTTGTTTCCTCAT
CTGAAGAAGAATCTGATTGCAGTCTTGGTGATCGTGAAGAACTTGGTCAGGACTTGCTAT
GCTTGAGAGGAAATTCCAGAAGTTCTCCAGACGAGGTTAGTTCGAAAAATCTTCAAGAAG
AGATGTGGGAAAATCAGAATCTTCATCTGAGGACNNNNNNNNAAGAACCTGCCATAAATG
CAAGAAGTTTGGTCACTACATTGTTGATTGTCCTCGCTAGGTAAATGAATCGAAGAAGAA
GAAGTACAAGGATGACAATTTTGATGACTTGAAGAAAAAGAAGAAATCTTCAAAGTCCTC
ATCATCAAAGTCCTCACCGCACAAGAAGAACGGTTTCATAAAGGCTCGGGCTCTTATTGG
CAAGGAAATGGATTCTGGGAAAGAATCTGAGGAATGTGATGA