Map Locations of contig_43709 (7585 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_43709

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_59555 2 1058 bp AK364405 Available Available None





CDS Structure of MLOC_59555






Contig Sequence (7585 bp)

>contig_43709 7585 assembly3_WGSMorex_rbca.fasta
CCGTCCGCGACGCTCCCGCTCCGACTATGGGGGGATGTCAGCCCGTCGGGTGTTATTCTC
TCCAGTCTGACCGTCCGCGACGTTCCTGTTGTTCGCAATGCTACCGCTACGACCACGGGG
GATGTTAGAGATATATTTGGTGTACATGTATTTGGTAGTCTAGAATTTGTAATCCATCTC
CTACCTTATCTCTAGGAGAGNNNNNTTGCCCTCCAAGTCTTGTACCTAATATATACTCGC
CCATGAGGCTCAATAAATCATCAATCATAAACATCTATTCCACCAATCCTCTCTCCTGTT
CAACACTCTCAATGGCTTTACGTCACTGATGACTACCTCATCACTCTAAATGACTTGTGA
GTAATGGCTAGTCATCACTGATCGGTGGGCCGGTCACTGATGAATGTCGAAGGGGCGGCA
AAGAAAGGTCACCATCGACCAATCGTGCCAATATGGTCCGTCAGTGATTAATATTCGCAC
AACACATACGCATGCAATGCTCATTGCATATACACATTTATGTTCACATAACACATAAAT
TCATTGCACATCCATAATTGCATAAATCAGAGTCGAAACATCTACATTTGCGTTGTTGTT
ACACCCAACAACGCCTTTTGCAACGTTAAGCCTTGACGCAAACCTTCCTTCGGAGCAAAG
TCATCATCCGCATACCTTCTCGTGACACTATATCTCGGCTTGGAAGAAGAGTTGTCGGGT
CAGCTCCGCCATCAGAACATACACACTTTGAACCCTATATGGCAAGTGGCTATGTGCATG
GTTAGGAATGTGTACATGCATTGTGCATACTTTTTATTCGCCATCAACCAATCATCTTAT
CATGTACATTACGGTGATCTTCGAGACTCTTGACTTCTCTTTGTGATGCCATGTCCATAT
GTAAGATGATTGTTGAGGTAAGAGATAATCGTAATTAATCTTCTCACACTTAAGATAAGA
CATGTTTCTCTATTAGTGAGATGCCAGCCCTTATTCGTGTACTTTTTTCGTACTTAATTT
TAACCATTACATAATACTAGAGACATGTCAGCATTTTTGTCGCCGTCGAGGCCACATGAG
ATAAGGTTATTGATGGTTAGTGGTTGTGAAAAAAATCGGTAGGGGTGCACATGACAACCT
CATACTTAGGCCCCTTTCACACGGCAAAGTTGGTGTTTTTTTGCCTTTTTATTGTTTTTT
ATTTTGTTTATACTTCAAATTATTATATAAAAATAGGAAATCCAATTTGGCTCCGAGCAT
TTGCTCATGCGCGTGATTTTTTTTCTGAAATGTCAAAAAATTCCAACAAATTTTTTATGT
ATTTATAGTCACATTCAAATGCTACCTGCAAATTTTTAGGCAAAGATGTTAAACATTTTG
GCCTATGAAAAAAATAACAAATTTGAACATCAAATATTACCTCATAATGTCACCACAAAT
TTGTTTTTCTCACCGACGACACACTACCGTTCCGTTTGACATGAAAATTGTCAGCATGCT
TGCGACACTAACACGGACATCCGCAAAAACACTCAGAATTTTTTGAAAATTGTGACCACT
TTTTTGGTGGTATTGTTCATTCGGGAGCAAATGCTCCCGGGAGCCAAAACTCCCTCCCCT
ATAAAAATATATTAAAAAAAGAACTTTACATAAAACATTAGAAACAATTGTTAACCAATC
ATTTGAAAAATGGTAAATGTGTATAGAGAAAATGTTTCTCAGTATACAAAAAATGTATAC
AAATAATATATAATGTGTATGAAAAAGTTGATCATGTATTTGGAAAATGTTAATAAAATA
TTTGAAAAAAATTAATAAAGAATTTGAAAAATATACAAAATGTTGACCAAGTATTACAAA
AAAACATGTATTGTATTCAAAAAATGTTGCACATGTATTTTCAAAATGTTAGCCCACATT
TATAAAATGTTAAGGTTGTGTAGAGGAAAAATGTTGACTATGTATGAACGAATGTTGAAC
TTGTATTTTTAAAAAGTTAAACATGTATTACAAAAAATTCTTGACATACACGAAAATTTT
AGAATGAAAACAAAAGGTAAAAAAAATCAATGAAAACCTAAAATGATACAAAAAAATAAC
TAAACATCACAAAAATAAAGTACAATAAAAATCAAGAAGGAAACAAAGAAAAAAGAGTAA
AAAACTAAATAGAAGGGAAGAAAACCAAAGAAAAAAGTAAAACCGAGAAAGAAAGAAATA
AAACAGTGAAAATACAAAGAAAAAGTAAAGAAAAATAAATGAGAACCGAGAAAAAAAGAA
TGAAACCGGTGAAAAACAAAGAAAATAGAAAAAAACAAGAAAACAAGTGACGAAACAGGA
GATAGCGAAAAAAACATAGCGAATGAAACCCGACGAACAAGAAAACTACAAGAAAAATTG
TGGCTACAAGTGGGGGATAAAACCTTCAATGAGGCTTATATTAGTCTCGTTATAAGCGAG
AGATAATACCCCGCAAAAAAAACCGCAAAAAAAATAAGCGAGAGATAACATATACACAAG
AATTTTGTTGTTCTTGGAAGAAACTGTGGAGTCGGGCTTGTGGAAGTAACTCTGCAAAAC
ACAAGTACCGGGCAAAGTGTGCATGTTCTTATGGAGGCTCTCTAAACACTCAATATCAAC
AAAAGACATGAGAGCTCATAGGCATATGTCCGAATCTAGTTATTGTGGTTTGTTCCCCTA
AAAAAAAGTTATTGTGGTTTGTATGGGTCACCAGACTCTTGGAGACACTCCTTGATCAAC
TGTACAACAACACGATGCATATGAGTTATTGTTGAAGAGGAGATGATCCATGTCTTGGTT
AGTACAATTGAAAGGTCGTGGATGTCGTCTAAAGGGAGGGTGAATAGGCACTTTAAAATA
ATTACGGTTTAGACTTGAACAAATGTGAAATAAAACTACTGTTTAAGTTATCAAGCACAA
AACCTAAAATAACTAGGCTCATCTATGTGCGCCAATAACCTATGCTAAACAAAATAAACA
ACTAAATGATAGCAAGATATATACCATGAAACAATACGGCTATCATAAAGTAGAATACAT
AAGTAAAGAGTTCGGATAAGAGAGAACCAAGGCACGCAGAGACGAGGATGTTTCCCAGAG
AAAACCGAGGCACCCAAAGACACTAAATGTAGTCCGGGAGTAGATCTTCACCTCCTTCCA
GACTAGAAGCAACCCACCTTTCCTTCCGTGCAATAAGTTTATAATCCATGCCCATTTAAC
CATTTTCCTCCTCAACTCTTCTGCCTTCACTTCATGCATATGCGTCTCAGATAGGAAGAA
CGCATCGGGGCTCCCAAGAGACCTCGACAGTTCCACCTTATGAGTTTCATTGTTCCTGAC
AAGTATGGTTTGCTGTGTTGGAACTAGCGTTCATTCTCATCGATGAGTTTCAGCAAAGTT
TTTCATTTTAGATGGTCCGGTTCAGTAAAGACCCAACAGCCCACATAGACTAGAAGATCT
CAGTTATTCCCTTCTGTGCTCGAAAAGAAGGTGCAAAATTTAACCGAGTCACTTGATCCG
GTTGAATTCAAGGTAACAAAACAAACTAACCCTAGCGCGTCTCTCTTCATATGCACCCCA
GTTGCAGCTGGTGCTTGTCAAAAGAAGCATGAAAGGCCGGCAACAGAAAAAGAACAAATG
GTTCGCTGAAACACTAGCAAAGCTGGTAAAACTTACAAATTATATCAAGCAATGCATGCA
ATTACTTGGTCCCAAAAATTATACTGGACACCAACAGCCACAAATGAACGACCCTGGTGC
TATACTAGCAGATAGAAAAACCTCTCTGTACACATGACAACATATGCTCAAGTCTGGAAC
CACTCTATTCGCGACACATCGTCAAGGATGTGACAAGCACTTCAGTGACATCTCCGATTA
ATTGTTTGTTCGTCCGTTCAACCCGTCATCAACCATTGGACAATCTGCATGAGCAACGTG
GTATTTATTAGTTTTAGCCTCTTTTGCTTAGGTCAGTAATGGAATGGGGATGTAGCATGA
GGGAAGTCGAAAAATAGGAATGGTGCGAGCCTGACCTTGATATCTGGCATTGCAAGGTGG
TACAACTCAAGAGCTCTTGTCGACGGTTTTCGTTGAAGGCAGCGTTCCAAATACGTGGTC
CCACAGGGTCGATGTTATTCCAAAGCCCTTGTTTTGAATTCTGAAGTGATGGTTAAGATG
GTATTTCTGATATGCAGCACAAACAACACGTTAGTTGGCGCACAAAGAGATGGGAGTGCT
TTGATAAGCTTCAGGTTGACATGATAAGCACCTTGAGATATTTTGCTGGATCGAACGAGG
GGTGGGCGTGATGCAGGTAGTAGTGTGTGCAATCATAGATCACGTAGCCCAACAGGCCAC
CTCCAAACACGCCAGGAGTGGTAGTTGTAGTAGTGAAGAGCTTGACAAAATTCCAGAACT
GGATGGACGGAGCACAAGAATAGCATTAATTAAAAATAAATACAGCATGTTAGAACAAAA
TGACGAGTTCAATACATTCTTTCACGATCCTGCAGAGGGCATCCAACTCAGTTCGAATGG
CTAACACTCTTTCATGTACAGCCAGGCACTAAAAGGCTAAAGCAGTATAGAATAAATGTG
GAAAAGTGTTGCCATGCTTCAGTTGATGGGTGCCACTAACAGAGTCGTCCTGATATTTTA
ACAACAAGGAAGATCATATTTACCGGATAGCACAAGATGGCTGCGGCAGTTGGTGGAAAT
ACAAGTCGAAGCCCATCCATTGGGTGCTTGTGATGGCATCCATGCAGAAGATAATGAGCC
GTGTTTGTCCTGCCATGCCAAAACAGCTATGATCAGGAGATGGTCGTCTCATCTGCTAGA
CTTAAGCAGTAAACGGGAGCACAACTTACCAGTAACTTTTAGTATCTATGTGGAACAGGT
ACCGATGCAGCACGTATTCAACCAGTGTCCAGATAAATATTCCTGCCACAACCATCAAAG
CTACTTCTGGAACTGTGTGGCCCATTTGGATCGATGTATTCAGGCACCAGCAAACAACAG
GCAACCAAATGAGAGGAACTGCCCACCATTTCGTACGTGTTAAGAACTGAAATGAGCCAT
TCATCAGAACATAATGTCCGAAATTTCAAACAGATGAAGTGCAAAAGGAAACAGAGTATT
CACCTCCAATACATCATTGGCAAAAAAGCGCGGCCCCTCCTTGCTAACAATTGGCTGGTG
AACCCAGTCCTGATACTGTTCCTCCAGATGACCAACCTGAAAAATTACACCCAAATATTT
GAATGCATAATCAAAGAGCAGGCCTGTATTACAACTGCACCCAAACACCAATGCTTAAAC
AGGGGAAATAGGCAACAGTCATGATCAATGATTACTGATACATCTTGGGGATGAGCAAAG
GAATTCTACAGCTTCTCAATTTAACTATCATAAATTACATGTACTAGTACATGTACTCTA
CATCATCGGGGTGAGCAAATAATGTGATTTAAGAAGTAACAGCACCTGTAGCTACGATCT
CTATGGCTTATTCCTTTGGAAAATCCACGTATTCCACAATTCTTTTATTAAAGCCAAAAT
GCCAAATAGGCACTCAGAGTTGAAAAACAACGGAAATCTTATATTGCTGACTTTCGCTGG
GACAGGGTGGCATTTCGAATGTTTTTGCTGGCAGTTTTAGACTTTTAGTTGTGTCGGGGC
TGGCAGTTTCTTCAAAGTAACATTGCTTTTCTGGGAGGATGGCAGTTTTGAGCTTTCATC
ACAGAAAATGCCATGCTGTTCTGAAGAAACTGCCACCCCACACACAACTAAAACTGCCAT
CAAAACGTTTGCAAATGCACCCCTCCTGGCGAACGTTCGCCAACTAAGGGGGGTCCAAAA
ACAGTGCAAAATGAAATATGGGCACATTTACCTGAAATACAAGAGGCTTGTCCAAATCGA
CGGTAAAGGCTTGTGCAACCATTGTCTTGGACTTTGATTACTGTTACTGTACATAAGAAA
AAGTAAGAATTAAGATAATTCGTATAAATAAAAGGTCAATAAATGTAGAACAAATAAATG
ACAGAAAATACATTCAAATCCATGCAGGACAAGACGAACTAACGGGATCACTACCGGTCT
GTGACTGCTACTGTGCAACATTCACAGTTTGCACTACCTACCTTCTGCATTTTTACTTCC
AAGTAGGGTAATTATTAATTGACACTCAAGTGACACCACAGCACCATGCTCCCACATTTC
TGTCATGATATGGACCCAGCAGCCAGCTCTTAGTGCCCAATCTTCAACAATTTGAGCAAC
TGTTGTCAGCCAACCGATTGAACATTTAAACAAACAAAGAGAGCAAGTGGCGATGCCGCC
CTGGCGTGCGTCACTATTCTATGAGGACCTTGGGCCCAAGGGCCGAATCAGGCCTTGATC
TCAGGGAGTGGCACAGCACCACAGACTGAGAATATCCTCAGATCGTCCAGATCACATGAT
CTGGTTTTGGAGCCCATTTATTATTATTACCAAAGAAAAAGAAAACTGAAAATTCCAGTT
CAGAGACAGGTGCACATGGGGGCAAGGCAGGGCCCTTTTAGCCATGTTACAGAAATTCAT
GGCATTTTGACTCCGCGGCATATTCTAATAAAGCAAGCTGTGCAAGAATACAAGGGAGGC
ACAGCTCAGAACCCGGCTGTATGGCATCTCAGCATCCCACTGGAATCCAAGGGGAAAAGC
TGTGTGCCGGCTGGGGGATTGCTCAATCACAACCCCCCCATAATTAGAAAACTCTTGATG
TTTTAGCCCGAACTGGGACATAACATCGCTCGTTCCAACAGTTGGCCAGCTAAATAAAGA
GCGTAATGAACCAGGCATCCTACTACACCGCCGGGATCAATTGCCGCCGCGTCGATTCCG
TGGCTTGTACAAAAACCTGATCGTTCTCACGCACCGTCAGGCAGGCGTAATTCAAGCAGC
TCTTTGCCTGGCTGCGGCTGGTCCTCGCTCCCCTATCGTAAATTTCCCAAGAGTGGACCG
CGGGATAGCACTGATTTCCCAAGAGTGGACCGCGGGATAGCACTGGTCGTGGCAACGACT
CGCCGGCCGGGCGCCGGCCATTGTGAATTTCCCGAGAATCCGAATGCTGACGAACTCTTT
GACTGTTATAAAGCTTAGGGCCGAAGCAAGGAACCAGGGGTCGCCATCCGGCCACGCACG
CAAAGGAGAAATATGCTATGCTCGAGAGCTCCCAGTGCTAAATCACCGTCCACAGCCAAG
GCATGATTCTTCCCCGAGCCGAGGCGCCGTCGGCCAAAAAAAGATAGTTTTTTTTCCCAG
ATGCGTGAGCAGTTGAGCACTGCGCGCGCGGCTTGGGCTCGGAGATGCCGACGACGAGGC
TGGCCCCCCGGCGGAGGGCGGCCCGCCGGGTAATGCGGCGGATCTAGCCCCCGTCTCCGG
CCGGATCTAGCGCCTGGCCGAACGAGCTCCAAAGAAGAGAGAGAGGGAGGGACAGGGGGA
CGGGACGGCGGACGAACCTGCGCGACGCAATGCCTGCCGCCGACGGCGCCGGAGGAGGAG
GAGGAGGGGCGGCGGGGTTCGGGCC