morexGenes - Barley RNA-seq Database

Contig contig_43682
Source Contig contig_43682
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_43682 (10274 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_43682

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_59519	1	1029 bp	MLOC_59519.1	Available	Available	None
MLOC_59520	2	2615 bp	MLOC_59520.2	Available	Available	LOC_Os04g41330.1, FRAME:+3, EVALUE:0.0, 13104.m04055 protein expressed protein
MLOC_59521	4	1509 bp	MLOC_59521.2	Available	Available	LOC_Os04g41340.1, FRAME:-3, EVALUE:0.0, 13104.m04056 protein 4-nitrophenylphosphatase, putative, expressed
CDS Structure of MLOC_59519

CDS Structure of MLOC_59520

CDS Structure of MLOC_59521

Contig Sequence (10274 bp)

>contig_43682 10274 assembly3_WGSMorex_rbca.fasta
CCTCGAGGGAGGCATTGAGAATTGGGACGACGTGGCCGGGCCTTTAGTCCTGGCCTAGAG
GCAGGCCGGACTAAAGGGTCCCGGCCNAAGGCCCGTTTTCCACTAGTGACCTAGGCAACG
GTAGCAAGTGGGGGTGGTCTGGTGACTGGTTTCGCCATGGTCGCGAGATCCATGAGGGCG
AGGGGATTCTCGCGACTAGGGTAGGGAAATTATCAGGAGGGGGTAGTCCATCGGGCCTCT
CATGCATCGGGGAAAGAGTGGGTGAGGGTTAAGAGGAGCCATGCATAATCAGTTTGGGTT
GTTTGTTGTTCACGTGTGGGTATGGATAGAGGTTTCTTTGTGCATCTCGCTTGAACCATC
TTGAATAGAGAACATACACCCTATCCAAAAACCTAAAAATAAATGGAAAAAGTTTAAAAT
CATACGGATGATTTCTGCGAGAAATCATGCGTCGCCTACACGCGTTTCGGTGGGGGACCA
CACACCGTTTTCTACAGACATCCAAAGCCGCTCGTTCCTTTTGCCCTATCTCTTACGTTT
GAGAGTCATGTCCTACCTCTCTCATTCTTCCGCCTCTCCGCCCAGATGTAACACCACGCG
AGATGCACCGGCTACCGGTGCTGGACCTTGTCGCGCTCCCCATGTCACATCATCACGCGA
GCGCGATCATCCTAGCAACAACATGCTGATCCATTGAAGCACCAGTCTGTGGCTCCTCGG
GATGGATTTATGGAGCTCCTCTGTCATCGGGGTTGTTTCGCTCCAACCATCACACCGCGA
GACTACGTCGGCACCGCGCCCACTCGTGCAATCCCGCCTTGCAGCACCCATGAGCACTGC
TGTTGCGTTCATCGCCATGGCCGCAGCCGCCGCGCTTCGAGCCGGTGGTGCGGAGGCGCC
CTTGCTGTAACAGGTGTTGATGAAGCGCCGTCATATTGCGAGGGGCACCATCGCCCGTGC
TGCGAGGTCGACGTGTTTCTTTCTCGTGGTTGCAGCAGCTGTGCTGCTGCAAATCGAAGG
GGGCAACGACGACCGGCAATGTAGCAAGGATGATCCTACACCGCCGGAGTTGCAATGGAG
CAACGCAGGGCCGCCAGAAGCATAGCCGACGCTGAGTGGAGCTTCGTCGGAGTTGAAATG
AAGTTTCGTCGGAGCAGTCGGTGCTGCAATGAAGCTTGGTCAGAGTTGGATCGAGCTCCG
CGGGAGCCGTCGATGCTGCATTTGAGCTCCGACAGGGCTAGCTGGACGTCGCCGGTGCTG
CGTTGGAGCTCTGTCAGGCTGCAAGGGTGTTGCTTCGAAGCTGCTCGTTGCTGTCGTGTT
GTTGTTCTGATCCAATGGCTACCAGCGAGTTGATCGGATGGCTGGTTAGGCGATCATCGG
GCTGATTTGTAGTTCTTCCCAGAATAAATTGATACAAAACTTTGGAAAACTGATTTGTAG
TGTTTCCCAGAATAAATTGATATAGAACTTTGGAAAACGCTACGCGTCCGCCGGTTGATT
TCTAAAAATTATTTGTGGCCTCCACAGCCGTTGGATGCCTGAGTTGATAGTCGGTTGTTC
CATTCGATCTAGTGTCCGCGTCCCGCATGCTCAGTCGTTATTTCCCGCAATAAGCGGTGT
GTTGCAGAAACTAGACACTCTTCTCCGGCCCTGGCAGAGCTGCGCCCCGCGCGGTGTCGC
CGCCAACCCACAGCAAAATCAGCCCGTCGCTGACGTGCAGGAGCTAAACTGAAGTTTCTG
CAACACTTTGCCCCGACCTCGATAGACCCGTGTCCAGCGTCATCTTGCAACGGCCACGCT
GCAGAAACAACGGCCGCGTTACAGAAACTATTTCTGAAACAATGACTCCGTTGCAGAAAC
AATTCCTAAAACAACGGTCACGTTTCAGAAACAACGATCGCGTTGCAGAAACAACTACTT
TGTCTTGTCATGATTCTTTTTTAAGAAAGGACTTGTTGCAAATTTTTCTTGTAACAGATC
GTTTGTTTCGATCTGCATCTCGAAACATGTGTGAGTTAAAGAATAGGAGGAGGTCACGAA
AACACTCCCTAGAAGTCTGATCTGAAATAGATCCGACGATGATGGAGGCGGTCAACGCGA
CAAAAAAAATCGGTCGACTGGACGAGAGTATTTTCCCAAAACTTTTGCCAAAATAAATTG
AGTACTACTCCCTCCGTTCCTAAATATAAGTCTTTTAAGAATTTTCATTAGAAAACTATA
TACGGATGTATATAGACATACATTAGAGTATAGGTTCATTTATCCTGTTCCGTATGTACT
TAAATAATGAAATATCTAAAAAGACTTATATTTAGAAACGGAGGGAGTAGTACAAAACTT
TTGCCGTCATGTAACCTCCATACACCCACGTCCTTACCAAGTCCTTACCAAACACTCAAG
CCATGTCGACCGACCGAAACGACCGTGCAAGCGGCGCCTGGAAAGGACCCGGCGCGCCCG
GAGCAAAGATTGACAACTCGTAGGAGAAAACGGAAGAAAAAGAAAAGAAAAAGGAGTTCC
AGAAAGAAATCTAGGGCAAGCCGCACGCACGCCACCCAAATTCCCGTAGTCCTGCGCGGC
CATCCGCCGCCGCCGCCACCACCGGCGGCGAGTCTCAGCGGGGGGCAGAAGCGGCCTAGG
AGCACCCCTTCGCCCCCCGAATCAGGCTCCTAGGGTCAGAATAAGGGGGAGAAGGGGCAA
GTCAGCCCTCCCCGTTCGATCGGAAGCGACATCTCTCCCCGGAGGGTCGCCGGCGGAGCA
ACCGCTGATGCGGCGGCCATGGCGTCGGCGGTGCTCTCGTACATTCAAAACCTGTGGCCG
CTCTCGGCTCTCCTGAAGGAGGACGACCTGGGCGCGTCCGCGCGGCTGGTGCGGACCCTC
CCCGTGCCGGAGGAGACGAAGCAGTTCGTGTTCGCGATCCGGGAGCCCGAGACGCAGGGC
TTGCTCTACATCCTCGCGGCGCAGAACCTCTCCGAGCAGTCCGCTTTGGACGCCGGCCAT
CTGATCAGGGCGGTGCGGCCCCGGGCCGTGATCACCCAGGTCGCGCACACAGAGGTCGAG
GACGTTTTGATCGAGGAGCAGTGCCTGGCTGAAGGCGGAGCGGGCGGCGTGCCGGCGTCG
CCGTTCCAGGTGATCAAGCGTTGCATCACGGAGAAGAAGAGCAAAGATCACTATGTGAAA
TCCGCTGCTTGCCAGGTCTTGCGGGAGATCTTTGGTGTCGGGTTCTACGGCCACCTATTG
GCTGCCAAGAGAGCTGCGGAGGAGACAGAGTCACATTTTCTCTTGCTCGGCTCTCCGTAT
GAGAAGAATTGCAATGCCGGTGGATCGAGCAACGGAAATAGTACGGGCGATAACTCAGCT
CAGCAATCGCAGACTAGCTGCTCTCTCCCTCAGAGTGCCATGGATGATAAATCTGGTCTC
CAGTTACAGAGTAACTGCTTGCTCCCTAAGAGTGCCACTTCAGCAGTAAGCTCCCATGTC
AGGAAGACATGCCTTGTGGATGATTATGGAGGACAGCTCATGAAGTCGCTAGCTCCAACT
GCTAACTTGTTGTTGTCCCAAGCTATCTCTTCCTATGCTGTTGCGGAGTGCGGACTGTCA
GAATGTAAGCCAGCCGACAGATACGAGCCTCCACTTTTTGCGCAGACTGTCTACCCTTTG
CTCTCTGACCTTTATGGGATATTTGTTGAAATTCCCTCAATTGGGAAGGCTATGGCTTCT
GCGCAGATGTTGCTCACTGAAGTTCACAAGGGGAAGCCAGTTTGCAGTGAAATGTTATCT
GATGTCTATGTATTTGGAATTGCGATAGAGGCTCTCAGAATATGTTTAAACAATGCAGGA
AGACGCCGCATTAATACTAGGGATAATCATAGTTTGGAGAAGTTGGATTTTGCAGAGCTC
CCTTCTGAGGAAAAGTGCCACATTCTTCTTGTTCAAGCTCTCAGAAGTCAACTAAGGGAG
TTTGGTTCTGTGGTAGCTATAGTTGATGCCAGCTGCTTAGCTGGAATAAGGCGTCACTGG
AACACTCCTGTTCCTTCGGAGATCACACAATTAGCCGGCAGTTGCTTCAATCATTATGGC
AACAAAAATGAGAGCGAAAATGAGAGTGATAACAACGAGGTGCCATTGGACAACACTGAT
AAAAAGAGCTGGATAGCTGAGAAGCCTGTGGTCGCAGTTGGTGCGGGAGGAACAGCTATT
CTTGGTTTTTCATCTTTGTCAAAAACTATCCAGGTATCTGCCATTCTTAAGTTGGCTCCT
TATAAAACTCCAGTGATATTAAAGTATGGCTTAATGCAGCTGCAAAGGCATGCCGGCATT
GTATTAAGCAAGCTCCTCTCTCATGGCGTGGTTAGTGCTGGTTCGAAGTCATCTGCTTTA
CAATTCACAGCTTCAGCAGAGAAGATTCGGGCCGTGACACACACTGTAATATCATCTGTA
GAGAGAACTAGCTTGTTGGCGATGCGGACGTCGTTCTATGAAATAATGCAAAAGAGGCAG
AAGCACAACCGACCTTTCCGAACAGCTCCTTGGGCAACATTTGGTTTTAGCTTGGTTGCA
TGTGCTGGCCTCCTGAAGCATGGAGATGGGATCGAGTGTGCTGCCGAGGCCGCACCTTCT
GTTCCCATGATTGCCTCCCTGGGCCGTGGTCTTGAGAGCTTGCGTGTCACATCAGAGGAA
ACGAGGCAAACAAGGAGCCAAAATGTGAAGGAAGCTTTGCTAACATTGTTGCGCAGCTTA
AAGAAATGAGAAAAGCAAAGCCACAATAATGTACAACTGAAACTGTATAGATTTTATCAT
GCAATTTTGTCATTAGAGCGAAGCTTTCATACCACCTGTACAGTACATGTTTCTTGTTCT
TACTGATATAATGAAATTCTCATGGTATGCTACCGTGTACACTTCTTGCTTGAGCTTAGA
GAGCATGGGAACCAGATTGGATCATTTGTGTTTGATCTTCTGTACATAAAAGTACAGAGC
ATACACATAATTTGATGTTCTATGTTTTAGTAATTTATTGGTTCCCAGTAAGATTACCTG
GTACAAGATCTGAGTGAAACACTTTGTTGCTAGTATTGTTAGAGGTAATACACAAACAGT
AATGCTTCTCTTCTGGAATATTTTCTCATGAGCAACATAAGGGTTGGTGATGCAATTTAT
TTTTTTCTTCTGGGATCATATTTACCTTCTACTCCCTCCGTTCCTAAATATAAGTCTTTT
TAGAGTTTTTACTAAGGGACTACATACGGATGTATATAGACATTTTAGAGTATAGATTAA
CTCATTTTGCTCCGTATGTAGTCACTTAGTGAAATTTCTTGAAAGACATATATTTAGGAA
CGGAGGGAGTATATGTCTTGTGCTTAGCCAACATTTCTGATCTCCCCTTTTTATTCTCTG
GGCTTGCATTTCGAGATTAACCAGGCATATTTTGATTGCCATAGATGTTTTGTTTATTCA
TTGTTAATCTTGAGCCAAGGAAAAGTAGGTAGCAGCATCAAGTTGATATGCATTTAATGA
TGTACATACTTGCATTTAAACATCTGTCTCGCGATTACAAATCAATGTGAAAGAAAACCA
TCCCGGGTGATCTCTTAGTTGCTATACAAAAGTAACGGCCCTCCCCCAGCTAAAGCAGTA
CATTCACATTTCTGTTCATACTGCTGCTGTTTTAAGGGTGAGAAAATCAGAAATTTGGTT
TGTGTAGAAATCTGGCTGGATCGTGTTGTCGGGGCTCTGAAGCATCTGCACGGAAGTCAC
ACCTGCAGAAGGCAGCCGACCAAGGTTAATGCCGATGAGAATTCAGCACACCATGCACTG
GAGTTCAGGGTGAATAGTATGATCAAGATACCTGAAAGAACCAGGAGAGTTTTGCAGCCT
CCATTTTGCCCAAATAGAACGTCAGTATCCAAACGGTCACCTACCATGCATATCTGAGAT
GTTGTGATTCCAAACCTGCCACCAAAATGAAGAAAGGTGAAACATCTCAAAACTATTCTT
AGGCATCAGCTTTTGCTTCACACATTCTTCCTTGCAGAGTTCTGGAAACGGATTCATGGA
GCTGGATTGCTGCTGAGACAGTTAGCCTCTTACTTCTTTGCCAGGTAGTCCATCATGAAT
GTCGACGGCTTCCCGACGACGAGCGGTTCTTGTTTGGTTGAACCAAGAACAGCACCGACC
ATCGACCCGCCACCTGGGCCAAGGCAAATGTTCATGATTTGAGCAAGGGACGGTGGTATG
TATCCTTCGAAGTATCAGTATGTATAAAGAGTTCTTTTTAGCTGGCATATATAAAGAGTT
CTTTTTAGCTGGCATATATAAAGAGTTGGAATGGCCGACTAACCTGCCCACTCCTGGGCA
TCAGTGAGATGGGTGACAGCGTCCCTGTTTGTTGCAATGAAAAGGCACCCAGGATTCTCA
CGTATGCAGAGTGTCCCGTACCTTACGAAGTAGATTAGCGATAAGTTTACATATGTGGAA
CTGGTAACACCAAACTTTTGTAGATTACGAAGAGCTAGCATGTGATCTTGCTTCTACACG
TGTTTAATCAAATGAGTGTGTTTTCAGTGTGTCTTAATTGAATCATTTATATCCAACCTT
ATTTTCATTGTCTGTTTTGTTGTCTAAGTTTATTATTTCTAAGGCGAGAGAGGAGAGAAC
GAGGATTTACTTACTGAACTTTGTAGTAGTTAAAATAGCGATCAAATCCCACTACAACTG
CTCCAACCTGTGTAAATCCATTTTATTACTGCAGTGGTGCCACTTCGTAACTCAAGATCA
GAAGAGGAAGTTTGATTATACTTACATCTTTGTCATGCTCCATGTAGAAGCCAGGCTTCA
GCTCTATCTTCTTGTCACCGTCTGTCTGCAAGAGCACGGGGATACAATCTAAGTCGTGTA
AGTTTGTCCAAACTCTCGTCCACTCAGCTGATGCTGATTAGCATGCAACATTGGCTAAAC
CACCTACTACTATAATAACATGCTAAAACGAAAACATGATCTTGGTCTGTTAAATAATCA
TGAATATCACAGAGAAAGGAGTCACTCTTTGTTACATACAGGTCCGCCGAGGTACTGAAA
GCCAGCCAGCTCGAGCTCCTTGAGGATCCCTTCCTCTCCAATCACGTAAACCTGGACCAT
AGAAATACTTAACCCTGCTCTTGATTTTTTGGTGCTAAATCATGTGTGCCAATGCAATAC
AATGCAATGCAGCCAGATTTTCTAATGATGTTGACTGATGTACTACCTTCTTGTCTTTGG
GGAAATCGATGGACTCCAGGTATGCGGCAGCTGCGAAGGACGAAGCAAATATCTCTTCCT
GCACATTGACCGGCCATGCCTCGTCAAGTCAATTAGCAGGAGCATAAATTGTCAAGGGAG
ACAGCAGTTGATGACAGGCATACCTCGTTGACACTGAGCCCGAGCGTCTCGAATTTCTTC
CCGTACTGCTTCCTCGACTTGGTGGAATTGTTGGTCACGAACACCAGCCTCTTGCCCTGC
AGCACAGCAACAGCTTGATGAAACCAGCAAGAACCCATATGAAGTGTGAGAAGATGATCC
ATTCTGCGAATCTACCAGAGCCATTACAGTTCATAGCAGACCTTTGATCTGAGCAGGTCG
AGCGTCTCCGGCACGCCGTCGATCAGCTTGTCGCCCTTCCAGATCACCCCTACGCGCCAC
AACGACAAGAAGAAGAGAGCAGCCAATTCATTCAGGAAAAGCTCCAGCAAACTGGTAACT
AGACCTTGAGCGATTGATCAGTCTCTCACCATCGCAGTCGAATATGAACGTCTCGACGGA
GTCGATGAGCGCCTCGGCGTCCTCCAGCTTTGCCGCCGGGACTGCCGCCGCAGCCGCCAT
CACGGGCCGTCTGGGGGCGCTGTTCGGCGATGCCGTGGCTAGGACGCCGCCCGTGCGCTG
GCTCCTCCCGAAGGACGCGGACGGCGGCAGCGTCTGTGACGACGGGGTAGGGGTGGAGGA
GGTGGAGGCGAGGAAGCTGGGGGAGGCGCGAGCCAGGAGCATCGCTGCTTCGATGCTAGT
ACGTTTTTCTTTGAAGAGGATCGGGTGGCGTTTGGTTGGTGTGGTCTCGGTTTGGGCGAT
GTAACGGTATATGCCTATGTGGCTGTGCCATGGATGAACATTTCTCGTGTCCCGTCTGGT
TGGTGTGGCGCGTCCATGGCTTGCGGATTTGTGGCTGGCAAGGCAAAGGGGAGGGATTGG
GGCTAGTGTTGCTGTGGTTGTGGTTCGAGATAGTGTTTGCACTCGTGCAAAGGTCGGGAG
AAAACGAAACCGCCGAATTAACAAGGGAAATGATTCTTCAACCGACCAACTTTAAGCGAG
AGTCCACCGTATCCGTGCCTGTTGGATGGGTTCCGTTAAATGGTCATGAACCAACCCCTC
CGTATCCACGTTCTACAACTGCTTCATTGTTTTTGCAACCAACCCTGCAACGTGTAAAAA
AAATTCTTGTAGCACGACCCATGTTACAAAAACAAATCCGACAACACAACTCATATTACA
TAAAAAAATCCCGCAACATGATTCATGTTGTAAAAGAAATCCATAACATATGATCCATCT
TGCAAAAAGAAATCCGGCAACACGACCCATATTGTAAAAGAACCCGCAATATAATCACCA
TTGCAAACGTCTCTGCACAAGAGATCTGTTACGAAGTACAATTGTTAGATCCAACGGCTC
ACTAGGCGGTGAATCTTTCTAAAAGATTCGCCGGCTGAGACGTAGCACCCCAATTAATAA
CTACTCCTCGGTTTTTAAATATGAGTCTTTTTAAAGATTCCACTATAAACTACATACAGA
TGCATATAGACATAATTTAGAATGTGGATTCACTCATTTTGTTCCGTTTGTAGTCCGCAA
TGAAATTGCTAGAGAGACTTATATTTAGGAACGGGGAAGTAGGAAAAAAGTGAAATTTGA
CTACAACATGATGTTTGGATCGAGTATTTGCTATCTATTCATGCCAACTAGCTGTTACAT
GGACCGTAATACTTCTTTTTCCATAATGCGACTACGGCTAGAAAGAAGAGGAATAATATT
AAGAAACTTCTGGATGACACCGGGGTTTGGAAGCAAGGTACGGAGTTGGAAGATCACATT
GTCAGTTTCGTAACCGAGTGAGGAAATCTTATCCCTCTTTTGGAGAAGAGTGTCCATTGA
AATGAATAATGCCTTCCTTGTTCCTTACACTGCTGAAGATGTGTGTAAGGCTTTATTCGC
CATTGGCAATTTGAAAGCTCCGGGGCCTGATGGTCTTCACGTTATTTTTTATAAGACATT
TTGGCCTATGTTTGGGAACGATTTAATTGAAGAGGTTGTTAGGCCATATTTATTTCTTAG
TGGTTTTGATGATTGATGAAAATGCATTTACGGACTAATCGTATGCATTAAGCCTTTCAG
ATAATTTACATATGGCACAAGACGATTCTTGCCCCTCGGTGGATAATAGCGAAGACGGTT
ATTTTTCTGCATTTCGTTTTCGGTGAAATTGAATCGTAGGGGAACCGTACTATTAAGAGG
GGGTACACATCGGAAAGGTTTGGGTGGAATCAACACTACCCTTTCGTTTGCATCCTTGTT
CCTTCCTCACATCAATGGAGTTGTTCCAACTATGCCTCTGTTCTTGTCCTCAAGGAACCA
AGCAGTAGTACCGCCTACTCTGTAAGCGGTAGTACCGCCCCCGGGCAGTAGTAGCGCTGC
CCAGTGCCGTGCACGGTACCGATGGCTCTCGAGTCTTGACTTTTTGTGCCAGACTGAGCG
TTTGTTGGGACGTTAGTACGACGCAGTAGTACCGCCTTCAAGTGGTACCGCCTATTACTA
TGCTCCACTACCGCCCTTCCTTCTGGTCTTGGGACTCTGAACGGACTCTGGGCAGAAATA
GGGCGAGGCACTACCGCCTATAAGCGGTAGTACCTTTGCTTCTGCCACTGCCCTGCGTTC
GAGGGCCTGTACATTGCAACCCCAACGTTAGTACTACTGGGGCGAGCGGTAGTACCGCTC
CGGCGACACTACTAGCTCGTGGCTGTGTGCCATTGCCTGTGTAGCTGGCGCAACCACCCA
AGTGGTAGTACCGCTCCCATGAGTGGTAGTACCGCTTATGTGCCGGCTAAGAGGGCCTAA
GGTTGGATTTGTTCTCCCACTATATAAAGGGGTTTCTTCCCCAAGAAGACCACCTCTTCC
TTCCCTAAGCTTCATTGTTGCTCCAAGCTTCATTTTCGCCCGATCTCTCTCCCTAGCCCG
TAATAACTTCGTAT