morexGenes - Barley RNA-seq Database

Contig contig_43646
Source Contig contig_43646
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_43646 (7174 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_43646

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_59475	1	1091 bp	MLOC_59475.1	Available	Available	LOC_Os11g06890.1, FRAME:-1, EVALUE:3e-69, 13111.m00699 protein vacuolar ATP synthase, putative, expressed
CDS Structure of MLOC_59475

Contig Sequence (7174 bp)

>contig_43646 7174 assembly3_WGSMorex_rbca.fasta
AAAATTGCATAACTATTCGTTGTTCTGTCAATTGTCCAACGGTAATTTGTTTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTCACTT
ATATATTCAAAAAAAAATCCTTGTTTTTATTATTTGTCTTTTGTTTTATTTTGCAAGTTA
CAATTATCTACAAGTATCTACACACCTCACTTGCTTGCANNNNNNNNNNNNNNNNNNNTT
GACAACCCTCTTGTCCGCGTTGGATGCAAGCTGTTTGCTCTTTTGTGTGCAGCCGCTGAA
GACGGTTGAGGATTGATATTCATATTGGTTCGATAAACGTTGGTTTCTTAATCAAGGAAA
ATACTTACCCGCATTGTGTTGCAATTACTGGTTGCCTCGCTTTAGGCATTACAGCGAACA
GTGTATAGGCTCTCATATGCTCCCCGAGCGGCAATCACGCCCGCTACACTTGTGGCGAAG
AATACTCAGATAAGACAGGCGCCACATTGTTGTTGATGATGTAAGTCACCGTACCGGTTG
GGGTGTCGAGCTGCTGGGCGGCATAAAGTACGGAGGCTGGTAATACTTTGGCCACAACAT
CGTTTGTGTTGTGCGCCCGCCCGTCTTGCGCCGACCACCACAACCTCCACGCCCATCGCC
ACCAGTTGGTCAACCGCTTCTTGAGCTTCTCCTCCTTTGTCTCCTTTTGTTTGACGCGGA
GATCCTTTTGTGTCGCAAAGTTTATCTTCCATCTCAATCAGGTTCTCCGATGGCTCCATG
CGTCGGCGGCGGAATGAAGAATAGGGTGTTGGAAAAGAGCGGGAAGTGGGTTGGGAGCGA
CACGGAATGAAAGAAGAGAAGTGGGAGATTTTGGCGCAAGTTGTGCTTTGCTACAATAGT
GCGGGCTTCATCTTCCTTTTTTGTGGGCCAGATTGAGATAGCGACGTTCTCGTGACTGAA
CTTCTGCAATCCTCGCCCATGTTTATCTCCGTTTTGCGGGAGAAATTGCATTCGGACCGC
TTTGCGGACCGATACAGGACCGCGTTAAATGGCTTCCGGGATCGGGACCGTGCGGTCTGA
ACTATTGCGGGAGGTTTGCGGGTCTACATTGAAGATGCCCTTACTAGTCGAAGTTACTCC
CCACTATGGCTAGTCTAAATGAGAACATCTATATTATCACATCTATGACACTACCCACTA
TGGAGCTAGTAACTTAGACTAGTACTAGTTTAAGTTACTCTCCACAATGACCAGCCTATT
AGGTGTCTTCCTTGGCAGTAAATAAGGTCATATAAGAAACTAATTTATGATAATATTCAT
TACGGAGGTAGAATTATATGCATGATACTAACTTATGATACTACCCACTATGGATAGTTT
TAAGGTTGGTCATACTGGGGAGTAACTTAAACTAGTAAAATACTTTCTCTTTTTCGGTTT
ATAAGGCTCATCTCAAAAAAATAGATTTTCAATATATTAGCCTCATTTTGAATCTAAACG
AGTTAAAGTGCTTTGAGTCTCACACTATATTTAATTCACAGAGATAAGAAAAAGGAAATT
AATGGCTATGTATGCACCTTTTTGTACATACATCATGCAAGTTCAATGAGTGGGGGTGCT
ATATTTATTGCTTCGGAAATCGAATATGTGAGAAATATTTTATTGGAAACCTTGGTTGAT
GAGGTTTCAGATTTAAGCCCTATAGACTGGAAAGGAGAAATTATTTTTACTAGTCTATAT
CACTACCTTCATAGTGGATAGTGTCATAGATAATACTTCCTCCGTCACAGTTTAGAAGGC
ACAGTTTCATTTACATGTATTTACAGAATAGAAAAGAATTAAGACACATGACATCTACTG
CTTGGCTAGTTCGGATTACTAGTAAACTGCATGCATAGTGGGAAAGGTGGATGTATCCAT
GCATGAGGACTCCTTGTTCAGTGCTTGCATGAGTTACTCTGCATTATCTTTCCAAATAAT
TAGGCGTCGAGTGGTTATTGTGGGAGCACTTGCAAAAAAAATTAGAGTCAATCAAGATTC
ATCTAGATCCCAGAAAATCGTTCATGCGTGTACTCTGCATTATCTTTCCAAATAATTAGG
CGTCGAGTGGTTATTGTGTGAGCACTTGCAAAAAAAATTAGAGTCAATCAAGATTCATCT
AGATCCCAGAAAATCGTTCATGCGTGACTTTTAAACTGTAACGGTGAGAGTAACATAGAT
ATCCTCATTTATTAGTTGACAGTTTGTCAAGTCATTTTGCATTGAAAAGCGCTTTCATGA
TAACATATTATCTTACTCTATTTACCTCTCTCTTTATTAATTACTTATCACATCATTTTT
TTACTTATGTAAATCTATACTACTAGCTATGTTACTAGTCTAAGACATGATCTGGGATGT
GTTTTGCTCATTTTACCGTGGAAGAGCTGCCCATTACGCGTGCATTCATCATGTCCATTC
CAACATGATCAATCGGAGCACTGTATCACCTAAGATGCTGCACACCAAATATATTGTTGC
AGTGAACAATTTAGCATATACTCCCTCCGTTTTCAAATATAAGTTATTTAGAGATTTCAC
TAAAGGACTACGTGCGGAAGTAAAGTGTGCCTATATATCCATATATAATTTTGCAGTGAA
CCTCTAAAAAGACTTATATTTAGTAACGGAAGAAGTAACATAGAAGGGTCGGACATGAAG
ATATGCATGTTTGTTTGGAGGGGAACGTAACTTTCATTAATCTGAGCCTCTAAAATTGGT
TTTATTCAGTAATTACACCATGCTAGGGAGCAATTTCATTAATCTGAGCCTCTAAAATTG
GTTTTATTCAGTAATTACCCCATGCCTAGGGAGCAATGCCCTAGCGTAGAATATAGAAGG
GTCGAACATGAAGATATGCAAGTTTGAAGGGCTAAAGAACATAACTTTCATTAATTTGAG
GCTCTAATTTGGTTTTTCCAATAATTACGCCGCGTTAAGTTGCATGTAGCTCCATCAGAC
TATAGTCATATAATGACAGTAATGTAGCCAGTGACATGCATATCACATAAGGCCGCGCTT
GGCATTTACAGATGTAAGTTACCGAGCTGTGAAGGATTCCGTCCGAAAACTAAATGGTCG
ATTGAGGTCCGTATTTTCTACACAAGTGTATTTGATGGGAAAACGTGAACCCAAACATGA
CCTAAGTATTTTTTTTATGTAAGAAGTAATTAAAAAAAGAAACAAGATAATATAATATAT
TACCATCACATAGCGCCCTGCAATGAAAAATGACTATGAAATAATAAATAAAGATATTTA
TGTTATCACACATAAAACATTATCCATTGTGAAAGAGTAGTACAATATACAATAGATTAA
TACTCCCTCCGTCCAGGATTACTCATCGCATAAATTGATAAAAGTAGATGTATCTAAAAC
TAAAATACACCTAGATACATCCATTTCAATTAAAGTATTTTCGGATACTCACTCCATCCC
AAAATTCTTGTTTTAGATACATGTTACTACCCTAAATTACTCTCTCTGTTATGATCATCT
CACAAATCAAAGCGCCAAGTAGCAAAAATAGGATTACATAAATGCACACGGTTGTTAAGG
CTAACAAAAAAAACCACTTACATGTTACCCCATGGGTCTCGGCCTGTCGGATCCAAGTGG
ACCTCAAATGCAACTAATAAATTGGAAATTTCAAAAAGAGCCAAAATGTTCCCGAAGCTT
TTCTTTTCTGAATCAAACATGATCAGGTATTACATTCGTGTGAAAAGCTTTGACCCACTC
CAGGGCTTGAAAAACAAATTGTGAGTATAAAAGCATGAATAGTAACTTTTATATAGTGTC
AATTTTGTTTTTTCATCCAAGATTAATTCTCAAAACTTTTCACACAAGTACAACACCTGA
TCAAGTTTGATAAAAAAAATCAGGAATTACACCATACCATTCCGTCTAGTCGTGGGGATG
GGCAACTTTGGCGGGGTATCAATAGGAAAACAAAGGATTTTTTTTCCCCAAGAGGTTTGA
GTGGTTCCTAGGTAGCATAGTGTAAAAACAAGTCTATCAAAAATTCCTACAAAATTTAGT
CCTATATAAATCAAACTGATCCTTTTTGAACCAAAGGGTCTCATTCTAGTTTCAAACCTG
TATGCTTTCCCTTTGCGAAAAGCATAATTCGCAAGAAAGGACATTGGGGGATGAATGGAC
AAAACTCAATTGCATTGCAATTTCTCGCTTATTCACCAGATTACACCGTCCAGCCAGACC
CAACAGGCAAATAACTCTGCATAAATAAGCATCAACCCCCACCCAGCATCCTGACGGAAA
AAGAATGGTACATCAAGGGCAAACCTCCCTTGGCTACAGATGTTTTTTTCTCCACCAAAC
AGAAGAACGAAAACTAGACATGATAACCTCTAGAGCTCAGTTTGCTGTCTGAATAATATA
AAACAAGAGGGCACACAGGGCCGCGTGTGTAGAACATGCCTAATCGGCACGAGACTGGCC
AGCTCGGGATGACAGGATGATACCGACAATGAGACCGTAGAGAGCGAGCGCCTCTGCAAA
GATGAGGATGAGGATCATGCCAACAAACAGCTTGGGCTGCTGAGCATTCGCCCTGCAGAC
AATGATGTTTGATCAGCACAGGGTACAATTTAGGCAAGATTCAATTGATCCTCCGATGTA
AGGCAGTCATGCCAAATGAACAGTAGAAGGAAAAAAGAATTAAATTACATAATCTTGTGC
GCAGCAATTATCAGGTCTTACCCAGGAAGCAACAAACCAATAGAAAGCAAAGAGCCAGCT
AATAACATAGACAAATACTAAAGCCTTAACAAGGAATTAGCATCTGCTTAGCTAGTTCCA
AGTTTGGGAGTTTCATCTAAGATAGCAGTACGCATACATATTGCCAAAACTTAACAGAGA
GAATCATACTAACTAAACATATAGGACATCACACTAACTAGTAAACTACAAAGACCAGAA
CAAATGCAAAGTATACAGTTCAAAGAGCAGTATATATCAAAGCAGATCTACCACAAATAG
ACCAACTTACACAAAATTCATGGTGAAAGAAGTAATTTGACATAACAAAGGCTCATCATC
TATAGTACGTATGTGTGGGAAGAAATAGTCAGTGATTTTTCTATAACTCAAGATTGTTTC
CAAAGATAATCGGTACAACAAGCATATCATGCATATGTTCATCCTCAGGTTTCTTATAAA
TGAATCGTTAGTCTGGGTCATAAACAACATAAGTGGATTTATGTAGAGAAAGATCCGTGC
TGTAACTGAAATTTACTTCAGTTATTAAGGCTATATTGGAGTATATTGAGACAACCAAAT
AAATGAAACTTGAACAGGGAGTCTACGGAGATGCAAATCTCAAACAGAATCAGGTCTATG
GAATTGGGTCAGAACCATCCACCTAAATGCATCCCTTCAAATGCAACACATGCGCCTGCT
AGATACAACTATGTAGACACAGGCGTGAGGCATGTGCATTAACAATGCAAATTAACTACG
TAGTATCAACTAACCAACATACCAGCAAAATCAGTGCGCACAACACAATAAGAGATGATA
AATTGTGCTTTACCTGACTCCAGCATCACCAACAATGCCAATGGCCATGCCAGCAGCAAG
GCCAGCAAGGCCACAGGCGAGCCCGGACGAGAGGTGGGCATAGCCATCGAAGAGATAGTA
GGGCTTGGCCTTGGGGTTGATCCCGGTACTGATGATGACGGCGATGATAAGCCCGTAGAT
ACCGAGCACTCCAGCCATGACAACGGGCACGATGGACTTCATGACGAGCTCCGGGCGCAT
GACTCCCATGGACGCCACGCCGACGCCGCTCTTGGCCGTCCCGTAGGCCGCCCCCATGCC
TGCAAGCCAGGGACACAGAGAGATCTCTCGTCAACGATCGCAGGGACTAAACTAACCCAG
AACCAAAGCGCGCGATACGTCTCGTCTGCTAAACAAATCGAATCTACGGAATCGAACGAC
CGGCGCGCTAGAAGGGACAACGCTGGGCCGATCCGGGCGGATCAGAGCTCCAACCTTGTT
CCCCCAACTACTATGTAAGCTACACAAAGGCTGGCAAGTTTACGAGCGATGGGAGAGGGC
GTACATGAGAAGACGAGCGCCGCGGCGGCGCCGAGAAAGCCGAAGAAGGGGGCGGTCTCA
TCGCCGCTGAACACCGACGACATCTTCCTCCTGCTGCTGCTGCTGCGATCGGCGGTCTGC
TCGCTCGTCCACCCAAGGGAGAGCTCGAGCTTTCCTTTTGTCGCTTTGGGATTTGGTCTG
GGCTTCCACGATCTGATCTGAGGAGGGCGTTGGAGTTGGAGATTAGGGGGAAGAAGAAGA
CGGGGGTGGGGGTGGGGCGGAATGCTTTTTGCTGGACGGTTTTGCCCCTCTGGATGTAGG
AGCCGTGGACCCGTGGTTGCCCGGTCAGGAGGGGCACCGATGCCCTTGTCTGCCTCTGGG
TGCAGATTGTAGAATTGGTGTCTCACTGCTCGTGGGCCACGTGGAACGAGCCTTGCGTGG
TTGATGTCGTCCCAGCCTTTCGCGTACCGATGGGTCGTGCTCTACTCATCTACTACTGGT
CGTCTCTCGAAGATGACAGGCAGGGTGAAGTTTGTGAATCGTGGGTCATTCATCGGCGTC
AAGATTCGTAAATTAGTTTGTGAATATACATTGTGTTGTTACGTTTGTTATCTTCTATAC
CTACTAATAAAGCAAATAGTGTTTCTGTCCTCCGTCATAATATTTACCCCCGAAATTGAT
AATAATTACCGCCCATGCCACGGTAAGTAAGGAAAAATTGTTCGTTTCTGTACAAAAATC
GTGATGATGATCTATGAAACCTTAGAAGCGATATTCTGAAGTAAGCCCTTGGTGCCGCAG
TGGCTGGAGCCTGAACATTCTATCACATAGACGCGGGTTTGAGCCCAAGTTCTTCCTTTT
TTCATTTTTAATCTTTTTCCTTTCCTATCCTTATCTCTCCCTAATAACAAAGCAAATACG
GTTTCTGGTCGTCCGTAGTGGCATTTTTGCAAAACGGTCCCTTCGTTTTCAGTTAATCAA
CCCGCAGTCCTTTCTTAAGTGAGGAAAACTTTCATTTTTATGAATAAGACCCTACGTTTT
CCGAGGCGTGGCGGCAGCAGACGGCGCGCTCGCC