morexGenes - Barley RNA-seq Database

Contig contig_43573
Source Contig contig_43573
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_43573 (9762 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_43573

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_59425	1	810 bp	AK376942	Available	Available	None
MLOC_59424	4	1645 bp	MLOC_59424.2	Available	Available	LOC_Os03g53910.1, FRAME:+2, EVALUE:2e-170, 13103.m05904 protein tetratricopeptide repeat domain containing protein, expressed
MLOC_59423	5	3157 bp	MLOC_59423.4	Available	Available	LOC_Os03g06750.1, FRAME:+1, EVALUE:2e-58, 13103.m00743 protein expressed protein
CDS Structure of MLOC_59425

CDS Structure of MLOC_59424

CDS Structure of MLOC_59423

Contig Sequence (9762 bp)

>contig_43573 9762 assembly3_WGSMorex_rbca.fasta
TTGACAACCATGATATATATTTTTTGAAAATGTAAAGATTGCTTCAATTTTTGAATAAAT
TTAGAAAAAGAAACATTTTTTTGCATTTGTGCACAAAAATTCTAAATCAAGCGATGATAT
GTAAACATAATGTGGTCATCATTATTGAAGATTATGTTTTTTTTTTCTTCTGTGACAACG
TACGGGCCATTTTGCTAGTGTTACTTATTACTTAAATTCCCTTTCCATAATATTCCCGAA
CCAAACAGGCTGTGAGTACAGGATATTTCCCCCACCCCCCGTATATAGCCCTAAAGCTAT
AGAACGTCCGGCCTTCGCCGCCACGCTCAACGCTGTCATGTATTCCCCTTCTTCACTCGC
CACGCCAAGTCCACATCTCAAATCGATCTTCATATCCCCTTCTCCGGACGCGAAATCGAT
CTTCATATGCCCTTCTCCGGACGCGAAATCGATCTGCATATCCCCTTCTCCGCTCGGCAA
ACAAATCTGATTTGATTTTGCTTACTTTGTTGGACACGGACGCCAAATCGATCTGCGAAG
TCTTCCTTCTCCGCTCGGCAAACAAATCTGCTAGCAAGTCTGATTTGATGCCGCTTTCCT
TGCCGATCGAACTACTTCGTTGGAGGTGCGTACTCTGAATTATTTTTCCCGATTCAGTTC
GGTTTCAGATCGTACGATGGTAGGAGCAGATCAGAGTAGCACGGCGACGTTTTTTTTTTT
TTTTTGAGGGAGTGATGACTGATTTCTATTCGGATAGGAATTGCAGAGTCCGAGGTTCGG
CGGCTCTGTTAGGCACGAAGAGGAATCGCTGGTGTTTTTTTTTATATATATAGGAGAAGC
AAGGACTAACAGGATCAGATACATCAATCACAGGGCCTGTCAAAAATAAAGACGTAGAGG
AAAGATTATAAGGAAAAGCATGCCCAAGCGCCCAGCCCGTGGCGGCGTCGGCGAACGTGC
AGCCAAGCGTCCTCGTCAGCGGCGCCTCTACCTTGTCACTGAAGATTGGAAAGAGGGATA
CAGCATCTACGAGGTAGACTTGACGGACGACCATGGTGCCACCGACGCCGACTTCGATTC
AGATGAGCAGGAGCCGCGGCGCCTACCGTCGCCGGTCCTCCGCCTAGAGGCGCCACACAA
CGGGCCTTGGCACTTCGCGGCGGCCTTTGGCACCAAGATCATGGCCCTGCACCTGACGCC
CTGGCGCTACACCCCGGTCTTTGACGTCCAGACTCGGTGCCTGACCTTCGGCCCTCCGAC
AGAGATAACTACCATCCCGATCCATGTGCCCGTCGGCGACAGTCTCTTCAAGCTGGGTTT
TCGTAAGTTCCACGTGCTCCGCCCTGCTCCGCCACGATCTGAAGTGCTCTGGTGCAAAGT
GCCCGAGGAGTGGTCCTGGCACTGCCTCACGCCGCCACCCTTCGGGGATCACCGTGTCAC
CTCCCACGCTGTGCACCCCGACGGACGGACTCTCTTTGTCACTGTCAAGGTCAAAGGGCG
TGACATCGGCCACACCTTCACCTGCGACACGGGGGTGGACACCGATGACCCCGAGTGGAC
GGCACACCGCGAGTGGGAGCTGCCGTTCAAAGGCCACGGTCACTACGATCATAGGCTGGA
TGCCTGGGTCGGGCTCACCGATGACCCGGCAACCGTCGGCCACATCTGTTGCTGCCGAGT
GCCGTCCCTCGACGACGCCCGCTGGCCGGCCCCGGCGTGGAAGCTCAGCAGGGAGAAGCT
CTTCTGCCGCGACCCTACCGAGATGCATACCGGCGCATCCCTCGTCTACTTAGGGACGGG
GCACAAGAGTCGCTTCTGCCTCGTGGAGTGCCTCTCGCGAGGCTCGCGCCATCAGCTTCG
ATTGACAACATTCTCCCCCAGGTACCACAAGAATGGTGACCTCGGGATCAGCAAGCGCCG
TTGGGTTCGATCCTTTAAATTGCCCAAGACGCGGGGTAAAGACAGTGGATTCTTGAAGAA
TCCAGTCGCATTCTGGTTGTAAGCGTCCTTCCTTGGTCATTGCATTTTGGTTGTAAGAAC
AAGTATAATAAGATGATGTAAGCAGCATTTTGGTTGGTCATTGCATTCAAATAATGTATT
TTTTTTCTGAGTTAGAAGACAATAGACAAGAGAAGGGGACTATGAGTTAAGATCATACGG
GCTTCAAGAAACTTTGCGAGATTGTGAGATGGGTCATAATATATTAATTGTTCGCTATTT
ACAATTTCATATTCTTGTTACTACATGTTCTACTAGTTACGCCGGGATGCGGCGTCACGC
CACACCCTTGTCACAACCTGTTGTTGATTGAGGTATAATTTGAATTGTGTAATAAATTTG
TTTGAATTACTTACCAAGTGTATGGTGGAGCTAGTGGCTGTACACATCTTTTTTTGAGGG
AAAGAAGCTGCACACTTGTTAATTGTAACAGGGGGAAAAGTCTGTGACGTACAATTATGG
TTTTTACGGGCTGGGCGCCCAGACCACCGGCTAAACTGTGGGGTGGGATGAGGGTTAATT
AGGAGAAGTTTACTTAGGCCAATTGAAATAGGACAGCTCAGCCCGTAAAGTCTGTGAGGC
GGCATTCCGTGTGTCTAGCATTTTTACAGATAATAAACAGTGATCATGGGCATCAGGTTG
TGAAAGGCTTCGACAGTGATTCGGTTGAATGCGAGTATACCATCTTCAGTGAAGAAGGCC
AGTTGATTTCTTTGCTGCACTTGGTTACTGCTCTTTCCTTCATCAATGCGAGTATACCAT
CTTCATGGGCATCTGTTTTTTTGCTTCTGTTGGTTAGATCATGTTTCCTTGTATGTATAA
GACAAATAAGTGTCGATTGATGTTGTTCTCCAATAAGACTGCAGTTTCTCTTAACTTTCT
CTTTAGTCTTGATTTGTTGTTTTGCGTTATTTTCTATTTATGGTTGTCAGACTTGAAACC
AGTGTTTAAATCGATGTAAGTAGAAATTTGCGTTGTCTAATGTCTGATTTGTGTGGTATG
GTGGCAGGTGATGTATCCTCCAGCAGTTGTTTTTAAACCCATCGTACCCTTACTATCTGG
GGCAAACACGGTTAATCCTTAACGCCTCCATGTTTCGCTTCGTCTGGGCTTGGAACCAAA
TTGTTTGATGGATCTACTCTCCTTTTTATCGATGACACTTTTGTGCATTTCATGAGAATG
CCATCTTGTGCATTTCGTGAGAACTCGCATAGTTGATATGTATGACCAGAACATTCAGCC
TGGTTTTTTTATTGGACCAGGTTTCTTACGGCCAGTTGTAGTTGATGTTTTTGTTTTTCT
GCATCGCTAGCGTCCTTTAGTTTCTTTTTATGGGCATGCATTTTGTAAGGATAGTTGTAA
TCTGCAGCAATCAATTTGCACAGTATGCTATTGTATCTTGGCCACTTGAATCTGAGTGCG
TTACTTGATTGCTTGAACTGATTTACCTGGTGTGGTATTTTATCATTGGTTGCTTGGGCT
GCAGAAGCGAAAACATTAAAAAATGGGAAAGAGTTTGCACAATATAACACTGACGTGTCG
ATTATAATTCAGTAGTCATTCTAATAAGGAGTAACAGTGACCATGTCTTTAGATACAGCG
CACAGAATCATGACATGGACTACATGATCTAAACTACATTGACCTTGACCCACAACGTCC
ACGGTCTAGACTAAGAAATACTGTCTGTCATTCTTAGCAGACTGCATCTTTATTCACCCA
TGCGAGAAGCCCTTGGTTGTTTTGCTTTCTTTCTTCTTCAAATCTTTTTGACCCTCTGCT
TGAATGCATGAAAATGGCAACAATGAAAACTAAAAGGTTCATAGCTAGTACTAGTACATT
TGGAATATTATTTATTTTGAGCTCGAGCTGGCAGGTGGGGCGATGCGTTAAGGCTACTCT
ATGGTATGCCAGCTGACAAAGTTCTTGAGAAAGAACACTGGGCATCTTCTTTAGCCACCG
AAGAAGTACTGAGCTCCAAAGACTGATGATGACATCTCCCGTAAAGGCTTAGCCTTTTTC
ATTTGGGAAATAATTGTGATCGCCGCCAAGCGATTTGCTGCTTGGAGTAACCATGACAGT
GTATTTTTTGCCTAAAAGAGCAGCAAGTTCAGATGGCATGATGCCGATCTGACTGCTCAT
GTAAGCCAATAGAAATTGCGGGTTCTTCCCCACAATAGCTTCACCCTGCTCTTGGGCATT
ATCGTGTTCCACATGTACGACATGGAGCATAATCGTGTACCTGTAACGGTGGTTTTACAA
TTTATGATTGGTATTATATGTTCAGTTTTGTGGCGTCATAGAAATTAACGTTTTGGAAAT
GGAACATACGAGGCATCTGCTAGTGCTATCATTCTATTATTTCCAGTTCCTATCATTCTA
TTGTGGGTTCTTCCCCACAATAGCTTCACCCTGCTCTTCGGCATTATCGTGTTCCACATA
TATGGCAGCGAGCATAATCGCGTACCTGTAACAGTAGTTTTACAATTTATGATTGGTATT
ATATGTTCAATTTTGTGGCGTCGTAGAAATCGACGGTTCGGAAATGGAACATACGAGGCA
TCTGTATATATCATTCTGTTTGTTTTTTTTCAGTTTGCTCCAGCGTTCCTTGGACCCGCC
TGCAGTATTTCAGTAACATGAATTCTCAATATGTAAAGCTCACCCTGTACATTATAGTAC
AGCCCAAGGAAACCATTGAAACAGTAAGAAAACATGTCTTGTGTTCAAACTGTCTGTTAA
ACACCCCTAGCAGCGCGCTTGTTATAACGGAAAAAAAGGACAAACCTATTAAATCTTGAG
CAATCATGGAGTACTGTATTTCGTTATGGAGACGAGCCCGATGCTGTATGGATGGATGTT
GAAAACAATTTTGACGGGGAAACACAGCACGGACGAAGAGTAAGAAATGTTCAAAGTAAT
TTTATACGAAAACCAGATGGCAATCCAATCAGTAGTTTCATTTCCCGTCATGTGCTAGTG
CTATCAATCTGAGGGCCAAAAATTAAAGCCTCCTAAGCAAAACAGATAACGCGCCAGGTA
GGGGTCGAACCTACGGCCTTCCGCTTAGGAAACGGACGCTCTATCCACTGAGCTACAGGC
GCTTTAGTGCTGAGAGGAGCCACGCAATCATTTTAACAACTGTTATTTCCCACATTCATT
TATGGAGCCCTGTTTGGACGGAGCAGAAACCCTTTCCGAAGCCCACTAGAAGCACCGGAA
GCGGCGGCGGGGACAGCAGAGGAAAGGAGTCCAGAGGCGGCGCCGCCGATCCACCCAGAT
CGAGAGCGCCTTCGCCGACGACATGGCGCTGCTGATGGAGCCCGGGTCGGAGCCCCTGAC
GGAGGGCGAGAAGGCCGACCTGGACGCCATCGCCGCCATCAAGGAGTCGGCGGCGCGCGA
GTACAGGGAGGAGGGCAACCAGTTCGTCAAGAAGGGCCGGAAGCACTACCCCGACGCCGT
CGACTGCTACACCAAGGCCATCGCCCAGATGGGCGCCCTCTCCCCGCCGAGCCCCGACGC
CTCCGTCCTCTTCGCCAACCGCGCGCACGTCAACCTCCTCCTCGGCAACCACCGCCGCGC
CCTCGACGACGCCGAGCAGGCCGTCCGGCTCTCCCCCGCCAACCTCAAGGTCTAGATTAC
GCCTCCCTTGCTCCAATTCGTCCGATTTGGTGTGGAGGCCGCCGTGTGATGCGTGACATC
TTCGTGTAGCCAGGCGCACTACCGGGCGGCGAAGGCCGCGCTTGCTCTCGACCTGCTGCC
TGAGGCGGCGTCCTTCTGCCGGCGGGGGCTCGAGCATGACCCCGCCAGCGAGGAGCTCAA
GAAATTCCTCGCGCAGGTGGAGGCGCAGCAGCGCGAGCGAGATCTTAAAAGGGCCAAGGT
TGAACAGGCCATATCCGCAGCAAAGGTCTCTTCTGTGTTCCAAATTGGGAGTTGAGTATT
ATTGCCTTATTGTTTTCCGATGTGTGTGATTGACGGTATTAGACGCATATAGGAGCTTGC
TGCTGCTATAGAGAAGAGAGGGCTGAGGCTGGGGAAGGCAGCGTATCAGGAGCTCACCAG
GGTAAAGAAGCCGAAGCTGGATGACCAGGGGTTGCTCCACTGGCCAGTTCTTCTGCTCTA
CCCGGAGGTCATGTCGAGCGACTTTATCGAGGATTTTCCGGAGACTGATCTGTTCTCGGA
CCACCTTGATCTCATATCCTTGGAAAGTCACATGATACTTTTTCTGATAGTATGTACAAG
AATATGCATAGATACTTTCATCACAAAAAAAGAAGAAGGGATGCATAGAACATAGATACT
TTACTTGGTTTCCTGAATTCTTGTTATCTTAACTATCAAACATGTTCTCAGAAAGTTCCC
CGCCTTTGCCATGGGATGAGAACCATGCTTACACAAGGGAGGCTATTGAGATGTATTGTC
AGGTTTGCTTACACACTTTGAATTTTAATTGAGACTTAACCTGTAAGGCTGTACCTTCTG
CAAAGTGCTAGCACCTAAAGATGATCAAAATTTCTGTATCAAAATGTCATGAGGCATGAG
CCATGGCCTTGTCATACACCATAAAAGCAAAGCATTGATGCCACTGTGCTGTGTTTATAC
TACACACATTGTCCTTCTGATCTATTTTTCCACTAGATGATTCTGGGCCAAGTTTTTTCG
ATCCATACCTTTTTGTGATACTCAATTTTGGGGAATGCAACATAAGTTATGCTATTGCTA
TAGAGTGTTATTAGTAATTTTATTTGTCCGGTGATAGAATGTCAAGATGATAGCTCTAGC
CTCTGTGGCCACATTCTAAAAATGGTAGGTTTATCCTCTACCAATTTTAGAAGTGGCAGA
CTCATGTCAGAAAAGTAGGAGCTATTGAAAATTCAGATTTCAGTGCCATCATTAGCAGCA
GCATCCAGGCCACTTTTTGAAGTTATCTTGAAATTTCACCAATCTGTAGGATTTTTTATC
CTTCATTTACAACTATTATTACAGTCAACATAACTGTCACTACTTGAGACTTGAGAGTTA
ACATCTACCTTCTGCAAAGTGCTAGCATCTACAGATATAAGATTTTCTTCTTCTAAATGT
CATGAGGCACGACCTCTTCATAAAACCTAAAAAAAAAACTGATGACCCTTGTGATGTGTA
GCTGATTTATTTTTCACTAGAGGTCATTGTCCTTCTGATCCATACCCTTTTGTGATACTA
GGTTTTGGGGGATGCAAGTATGCAACATCAGTTTTGTTATTGCTGCACTGAAGTAGTTAA
GTGTTGTTGTTGGTAAATGGTTTATCTGACAATAGAATGTCGACATGATAGCTCCAGCCT
CTGTGGCAATATTCTGAAAATTGTAGCATTATCCTTTACCAATTTTAACAGTGTCAGAAC
TCAGACTCATGTGAGAAAACTTGGAGTTGTTGACAATTCAGATTTCAGTACTATCATGTT
GATCGTCATTAGCATTATCCAGTCCAATTTTTGACTTTTTCATTCAAAATTAGGATTACA
GTCAACATACCATTGTCAGTACTTTGACACAGGTTTAGGATAGAAAAACTTTCTAGTTTC
ATATTTCGTTGCCTTGCTGGTTAACTGATTTTACCATTTGACACACTAGGCCGGTGATGG
CACACCATTCTCCAAAAGTGAATTGTTAAAATATCTTCTGGAAGGCACTGTCGACTCAGG
GTCGCTCCCAGAAAGCCTTGATGGGGAAGATGGAGAACGTAGTACTGTCAAGGGCAGCAC
AGCTATATCATCAAGTATGTAAAACATATTCTTTAGGTCTTTTTTCTACATTTACATACT
GTACAGTTTTAAAAAAAAGACAGCACGGTGCGAGGCATTCTAGGGCTTTTGACATTGGAG
TTTGTAATGATGCTACCATTTTGTCAATTTCAGTATGTAGTCTGTCCATCTGGCATTAGC
AGAACTACATGATATAATGGTGTTATGTGTGCTGATAAGAAGTTGTGTTCCATTTCAATG
TGTGCAGCAGGCCAGGGCTCCTCTGGTAAGTGGATCAAAGTAAGAGAAGGGAAAACTCTT
CAGGAAGCGCTGCAGCATAAAGACTACATCATCCCCGCTGTACCTGGTCCGTTCCTCGAA
CCTGCGTATACTTTCACATTCTTACGCATGCCATTATTCAGTGCAAATAAGAACTTGCAC
TAATTCCTGCATGCAGTGTTCTTTGTCGTTTCGAGGAAGTCGGCCTTCTATTCGAAGTTC
AAGGATGGGAAGTGGTCTTTACCGTAGAGCTGCAGTGTGGTAGTTCAGTTCACCATATCA
GTGTGGTGCTATGGATATGATGAGGAAAGAGAAGCTGGGAATTGTTAATCGTCGTATGGT
CCTAGAAGGTTATACTGCTTCAGAGAAGATGAGTTGTGCTTAGTTAGCACTTGTGTGTCT
TCCAAGTTCCAACCATTGTTTGGTTGATGGCTCAGGAGGTGTGTTTCTAGAGGGAGAAAC
AACCGAATATGCAATTTTTCATGTGAATTTTAGCTGTGGGCATGATTGAACTTTTTGGGA
TTTCCTCTGGTCTTATTTTCTGTTCCATATCATATTATGTTGTTCAATCAGGCAATTACT
ACCTTTCTGTGATGTTCACCCAGAAAAGATTCATCTTCTCTCGGCATCACATTCACATAC
TAGTACGTATCCAACCCACAAAAAAGAGACGAGATGTTGGTGAGTTGGGGGACGCGCTGG
CGCACCGGAACCATAGGAGCGGCAGGTGTCGCCAGCTCGCCTGGATGCCGCTGGCGTGGA
CATGGCTGGCACGCGCAACGAAGACAAGTCGAAACCCGACGTGTCTATCTCTTCTGGTGC
CGCCGCCCAACACAGCCACACGCCGCTTTTATAGGAGCCAGTGGTCGACGTGCTCGCTCG
AGGCTGTGTCACAGTGTCAGTGCCGGTCTTACCGCGAGTGAAGTCTTCGTCATGGAGGAG
ATGAGCGCCGAGGCCGCGGCCATGGCGAGCGGCATGCTGCCTGGCGCCGGAGCTGGAGGC
GCGGAGGGCACGACGATGAAGGTGGTGGTGGCGGTGGACGCGAGCGAGGAGAGCCTGCAC
GGGCTGTCGTGGGCGCTCGACAACGTCGTCCGGCACCACCCCGGCGCGTCCGTCGTCGTC
GTCCACGCCCAGCACCGCGCCGACCACTTCGCCTACCCCGTCGCCGGGCACGGTACCGCC
TGTCCTGTCACACACACAGGCACATATACCCATGTGGGATATGGCACGCTCACGCTAACT
GACCGAGCTCGTTTGCGTGGGCATGCGGAACGGAAGCAGGCCTACAGTACGTCCCGCCCA
CGGCGGTGGACTCCGTGAGGAGGACGCACGAGGACAACTCCCGGCGAGTCGTGTCCGTCG
CGCTGGACGTCTGCAGGCAGAAGCAGGCGAGCGCCACTGCGGTGGTGGTGGAGGGCGACG
CCAAGGAGGCCATCTGCCGCGCCGTGGAGGACATGCACGCCGACCTCCTCGTCCTCGGCA
GCCGCGGTCTGGGCAAGATCAAAAGGTACGTACGCTCCAATCAGATCACCGCACATAAGC
AGCTTCTATAACATATACTGTCATTCTGAGGGCAGTTTAACAACTTAAGTGCCGAACCAA
AAGATCTGACAGTTTCAAACCATGTCAGATTTCAAAATTTCACTGATTGATTTGGTTGGG
GTGCGACAGGCCCAGGCAACAGTGCAACGCCTGGGCGACACGCGAGAGCCCCGGCAGCAA
GCTACCGTGATGGGCACTCCCCCACAAAAAATAAATTTAATA