Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
![](/morexGenes/blast_net_images/contig_43520_assembly3_WGSMorex_rbca.fasta-MorexXBarke_maploc.png) |
![](/morexGenes/blast_net_images/contig_43520_assembly3_WGSMorex_rbca.fasta-OregonWolfe_maploc.png) |
![](/morexGenes/blast_net_images/contig_43520_assembly3_WGSMorex_rbca.fasta-Morex_bigstats_maploc.png) |
Predicted Genes from contig_43520
Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
---|
MLOC_59370 |
6 |
3836 bp |
MLOC_59370.2 |
Available |
Available |
LOC_Os03g52840.1, FRAME:-3, EVALUE:0.0, 13103.m05763 protein serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed |
CDS Structure of MLOC_59370
Contig Sequence (8661 bp)
>contig_43520 8661 assembly3_WGSMorex_rbca.fasta
GAGCAGCGTGGTGTGCGCGCGGGCGCGCGGTGGCGCGCCGAGCCCGCACAAAAAACCCCC
CCCCCCCCCCCTGCGCGCACTGCTGAAACTAGGTGGAAAGAATATGACGCGGGCGGTGGA
GCTTTCACGCGGCGTTCGAGGCAGCAACAAGGGGAGGGAATGTGCGGCGGCAGCGGCAGG
AGTGGAGGTAGGAGCTAAAGGCAATGAAAGTGGATTCGCGCCAACAAAAGGGGCATGCGT
GCAAAAACATGCGAAATCTCGTAGACATGGAGGAATTGGGCAGCGGATATTGGATCCCAC
AAAAAAATAGGATGGGCGGATTTGAATGGTCGATTTGGGACAAGTTTACATGCAAATGTC
CAACCCCAAGTAATTTGTGGTCAGAGAAGGCCAAAGCTCAGCCCATGTTTCCTAATCCCC
CACAATCCCACTAACCTAATTATTCAACCTGATCTAAGTTAATGAATGTTGATGAGTTAA
TTTGATCTTTGGAAAGGCGTCATGCTGATTTTTCTATGTCCATGGAGCTTCATGGGTGTC
TGGGTATCCAATGGGTTAGGACATGGACACAATTTATGCCTGCAAATGCTTTAATAAATG
GGCAAATGATAGGAAGATGGATCGTGGGTTGGATTTGGACCAGCTCCATCCGCCCCAAAA
CCCGACCCATTGCGATCCTTAGCCACCGCTCGCCAAGGAGATACCGTTGGTTCCTGCGAT
GATGCCACCGCTCGTCAAGGAGATACCGTTGGTTCCTGCGATGATGACAGAGGCCGCCCG
GCCGCATCGAGCTCCAGCTCAACTTTGGTCACCCATTTAGCACTTGTTTTTAAGCTAGGT
TTAATTAAGTACTGTGTTTAGTTACTTCTAACGTTATGTGTAATTAAGTAATATTATGGA
GCTTTGATGAATGTGGTAGGTATAATTAACCTAGGATGCTTGGATTTGAATGAATTTTCG
TACTTTTGTTTGCTTGAGTATGGATGCAGGTTCAGACATTTGGTGCACCCCCTTGGGTAT
CACCAAAATTTGGGATAAGTTGGAAATCTCACCCTTACCCACCCAGGATTACACAGAATT
TTCATATCCTAGGTGCATTGTCAACGGCACATTGAACACCCCCTGCTCAACGGGGCTGGA
CGGCAAGGGACAGCGCTTACCGAGTTGTGGTTGGGACACAATTTGGCAGGAATTTCATCA
CAAAGATAATGTCCATACATGAGCTCACAAACCGCTCAAGATCTCAAAGCCGAATCATAC
GTGTTATCCACGGAGCACATGGAGAAATGTGTGTAAGTAAATGCTTGTCCAAGAAGGATG
GTGGTTCATATAGCATATCAGCGAAACATCTTACAGTATGTGCCTGCAATAAGAAACTAT
TGACAAAGTTCCCATATTCTGTAAAATGCTTGGATTCCTTTTACATAAGATGGCGCTTCA
TCATGGATCTATTGTTTACATGGACTTGTCCTCAGTTGTGCTTCCTGTTTGCTTCCTGCA
AGAAAAAGGAAAACAAAAGCAAAATATCTGTGATTGCGCGAAAAACAGCATTCATCGTCT
ATGTGCTTATGCGAAGAGGAAAGGGTGATGGGCCAAAACAAAAAACAAAAAAACTACTTC
AGGTGTAAGCTTGGCGCAAGATCTAAAACAGCAGACAACACAGGACTGGAGCAAACGAGA
GAGTCAAGGGGATTCCTTCTCCTGATAACAACTGAATTGATATATTGTATGTGTTTCTTA
AGGATTGGAGGAGAGATAATTTGTTTCTCGGGGCACACCTTGCTGTTGAAACACAGCAGT
GCTTAGTTCTTGTACTTCATGGTCTCTTTCTCGAATCCGATTGTTGGGAATTGTTTTGCA
TATTCCTCCACATCGTGGCGAAGCTTTGCAATTTCAGCTTGGATGTTGCTGTCGGATTGC
AAAGTGGCAACAAAGTCCTTCAGTTTGGTACCTAAATTGAAAGAGAAACAACAGAATATC
AATAATATGATCCCTGTGGTAGGTAAGGGCATACATATACAAGGAAATGCGATTCTGGAC
TCTGGAAAGCAACACAAAAAAGTTCGAAGAAGTTCTATGACTTCTAATACCTGCTGCTGC
AGCTTTAACCTTCAAAGCCAAGTTCACTGCCGAATCGAAGAATTCGGCAACCTTGGCGAA
GTCCTCCTCAACAAATCCTCTTGATGTAAGCGCAGGGGTTCCTGCAAGATCAGGGAACAT
GTAATCAGGTTTTGCTAACTTAGTTTAAAGAAAATTAGAATAACCATTATATGAGCATAT
GTGTTTACCCATCCTGATGCCTCCGGGTACCATAGCTGAAACATCACCAGGAACTGTGTT
CTTGTTTGCTGCAATATGCACATTTTCTAAAACCTTCTCCACTCTTGAACCATCTATTCC
CTAGAAATGGAATTTGAAAGGGATGATAAATGCCCTGACATGTCATAATATTCTAAAAAT
GAACTAAGTTTTGCTGTAGTTAGTACATCTAGCTATGGTGTATAAAGAAACAGTAAGTTT
CAGATCAGATGGATATCAAGCAACATACCGGTCAAAATAATCACAAAAATATAAAGTACT
GTCTTACCTTTTTCTTGAGGTTCACCAAAACTAAATGGTTATCAGTCCCACCAGAGACAA
TGTCGTAGCCTTTGGAAGTCAAGCTCTGGATATGAGAATATTGCCATCAAATAAGGACAT
TTTTTTAATTAAAGTACAATTAATCATGCTAGTTTAATATATATTTGCATCTCCAAACAT
CCTGTTTAGCATTAATTAATGTTGGTACTCAGTTAAGTACTCCTATTCCAACAAAGCAAT
TTGATGTAAGTTCTACAAGCTGGTATTTAATGCTGGCATGAGAAAAAATATATGGTAGAT
ATAACCTAATTAGATTTTCTACAAGCTACTACTAACATGACCATAAAGAGGTTACTCGTC
ATACTGACTGGCAGGTATCATAGGTCCAGTTTTCCTGGGCAAATATTTCTAGCAAATTCT
AACCACAAAATACCTCAGCAAATCTAGCAGAGTTGCTCATAACTTGCTCTTGATAAGCTC
GGTACTCCTGAGTAGTTGCCTGAAATTTAAACAGCACATTAGGGTGTTAATTACACAAAA
CGGCAAACTGTAAAATACAAAATAATATAAAATATTAAGGAACAGAAGTGCTGCAGACCT
GCTTAAGCGCAACGGCCAGGCCAGTAATAGTATGGTTATGTGGTCCACCTTGCAGACCAG
GGAAGACAGCAGCATTGATTTTGTCCTCAAAATCATACTTAACCTATATCAAAATAGATT
GTTAGGCCTTTGCATTCTTCAGGTAATATGAGTACTGCAGGTTAAGCTCAGTAGAGAACA
AACATCTTCAACACTCTATGCTACTATCATTTTATTGTATCTCTGGCAATACCTCCTTCC
CTTGTTTGTTTATTTCTTTCACCCCCTTCCGGAAAAAGATCATGGCTCCACGTGGACCAC
GGAGTGACTTGTGGGTAGTGGTAGTCACCACATCGGCATACTCAAAAGGAGAGGGAATGA
CACCAGCAGCAACTAGCCCACTGATATGTGCCATGTCTGCGAGAAGAACTGCCTTCTGCT
TGTCACAGATCTGCCAATTGCACAATAAAAATTGAAGTTATTGACTGCTTAGGAAGGGGG
AGGGGTATCATTGTTTATTACTGAAGAAAATGAACTTGCCTTCCGCATGCGGTTATAATC
ATAAAGGCGAGCATATGCACTAGCACCAGCAACAATCAACTTTGGCCTAAAAAGAACGGC
ACTTTTCTCCAACTGTTCAGAAGTAGCAAATGAAGCTTAGTAACACATGAAGTTGTTAAG
AAAATTCATCTTGAAATAATTTTGACTAGTGAAGGAGACATATAACAATGAAAATATCCT
AGACAATGCAGTAAGAAACCATTTCTTTTAGCTGAATGTTGCTAAACACAAAAAAGTACG
CACTTTTTCCACTTCACGAAACATGCACAAGTAATGTTAAAACTGATCAGGAGATCCCAA
AACTTCCATGAAATGAAATGAATAAATAAGGAGTTCACCTGGTCATAATCAATCAAGCCA
GTGCTTTCATCCAGTCTGTAAGGCATTGTCTCAAAGAATATTGAAACTGCTGAGATTTTC
TTTGTGTCAGTCTGCAAACAACAAGAAAAGAACCATTGAGCCATGGGAGTTTCTCAAACA
TCATATCTAAACATAATTGAGAATTATGCGCTTATTAGTATGTATTTCCTATTACAGTAT
GAAGTGCTTATCTAAACATAATTGAGAATTATGAGCTTATTAGTATGTATTTTACATTAC
AGTATGAAGTGCTTATCTAATACTACTAGACATAAAAAAACAAAAGAAACAGCAAACTAC
ACAGAAAGATGGCAACAAGCAAGCATTGGCTGATCATGCTTGCATCCCACCAGAGAAATA
AAAAAACAATAGCTTGATAATAAAGAAGCAGATAGATGTACCTGGTAACCATGGGAAAGA
TGTCCACCGTGAGGAAGATCCAGGGCCATAATTCTGTCATGTGGCTTCAGCAGAGCAGTG
TATACATGGAAGTTGGCAGGTGAACCCGACAGAGGTTGCACATTCACTGCAGAGGCAGTA
ATTGGTCATGCAGGTAACTGGCCACCAACTTGGTGGAAGGACAATTATCACACCAAGATC
ATAGCGGTTAGCAACGCAAAACATTAAAAATATAGCAGAAGTGTCTAATCCCAGGTGTGT
ACCATATGTAGGCTTTGGAATTGACTAATATATTTTGGCTTGTAAATGGTGTGATGCACA
TATTCAAAACAGAAATCTCTTAAGCAACTTGACTACTTTAGATTGCTCTATTTCCCATCA
AGTACCCTGGAAACTTTGTCAACTATGGAGCACACAAGATTGGCTCAAATCAGATCACCT
TTTTCCCATTCTGCTGTCTCATTTGCGCCATCCAAAGCACTAGAATTAAAAAGGCTATTG
GCTCCAGGTCCACATAAAGAATAGAATTTATAGAATACTTGGACTTAACCCATTAACTTT
AGGATATTACTACTTTAGAAGATTACCCTATTTCCCATCAAGTAAAATTTTGCCAACGAT
GGAACATAATAATATTGGCTCAAATCAGATCATCTTATTTATTTTCATTCTGCTCTCTCA
TTTGCATCACCAAAAGCAGTAGAGAAAAAAAAAGACTAATGACTCTATGTCCACATAAAG
GATATAATTTATAGGAAAACATCCTGCAGCGTCATTAGTTCTACCGGACACAAGAGAAGC
TAAAAACGAAATTAATAACAAACCATCATCAAGATCTTACCTCCCCACTTCTCCGGGTCC
AAATTGAAGGCCTCCAAAGCACGTTTCTGGCACAGCGTCTCGGCCATATCAATGTATCTG
CGGGCAAGCAAAGCCAAAACAGGCACCGGTTCACATCACTGACCCCCCACATCCATTTAA
TTCCTGCTCCAAGCATATATTTTTTTTCAAATGTAAATAAATACAGAGAAGAGAAGGAAC
AGGGCCGTACTCGTTTCCACCGTAGTATCTGGCGCCGGGGTACCCCTCGCTGTACTTGTT
CGTCATGACGGATCCCACGGCCTGCATCACCGACAGGGAGGTGAAGTTCTCCGACGGGAT
GAGCTCCAGCCCCTGCAAACCACCAGACAGGCCGACGCGATTCAGCACCGAGCACGATAG
CAACCAATCATTTGGTAGCGGCGGTTGCTGGTTGGTGAAGGCGGCGGCAGAGACCTTCCA
TTGGCGGGCCTTCTCGAGCTCGATGATGTCGGCGATCTCCGGGTCGACCTCCTCCAGCGG
CGCGTTGAGCTGCTTCGGCCACTGCGCTCGACGCGGGGAGGGGAGGGGAAGAAGGTAAGC
ACGGGGCAACAGACAAACAGACAAACAAACGGACAGGGAGCAATGGGCGGGCGCATCGGA
CATACGGTGACTGCGGATCTCTCCTCCGTCGCCGGCAGGGACGCCTGCGAAGACAAATCA
AACAAGGGAAATGGATGAACACACGCCGGGCCATGATTGTTTCGGAACCGCCAAAGACGA
TTTATGAGAAGAAGAAGGAAAGGAGAAGAGGGGAGGGCGGCGTGGCGTGGCGTACCATGG
AGTAGAGCGGCGTGAGGCGGGAGAGGGGCTGGCCGCGGGCGGAGAGCTTGCGGAGCGCCG
TCGCCATGGCCATGGTGGGTGGTGGTGGTGGGCGGCCTCCTCCTCTGGGTAGGGGTTGGA
GTGTCGGGTTTGGGAGGTAGTGGATCGCATGGCGTCCTTTATTTTAACTGGAGGCAGCAG
ATGTGGGCTGAGTGATCAGCATCCACCAGACGCATCGCCCTCACCAACCCCTCATTTTTT
TCCTTTTCAGAAATTGGAATGGATATGGGAGATTTTTTTTCTTTTAGGGATTTCAATTCA
ACATGAATTTATCTGGATACCATTGGGAATTGCATTTACTAGCTGGATGCTCTTAATTTT
TCCTTTTCCCTTTTAGCAAGAGGATAATTTATCTAGTTACCGTTGGAACTTAGCCTTTAC
TAGCAAAAACGACAATGAAAAACTCATGGTTCCAAGCAGGCTAGATTCGAATATGGGGTA
TTCAGATGCTGGTACAGGGTTAAGGATGCAGGTCCCACATGTCAGGCGTCCCTACATTTC
ACTCTAACTAGTTTATGGGAGGGTTAGCTCAAAGTATCCCCATCACCACCAACCGGAGCA
GACAAGATTCTTCACAGAGAAAAATAAGCCGAAACAAACAACGATCCTGATCCTAGAGGC
GCAGAGGATTTACTTGTATAAAAACTAGCCCATGTGGTTACTTAACTACCACTAATCAGA
AAGCAGGACACCAAATAGCAAAGGAAGCAGCAGCTCGGGCCACTCAAGCTGCCATGTTAT
ATATCCCACAACTTTGGCATCCATCACCTAACACCAGGAAAGCGACACCGCATTTCTTTC
AAAAACTAAAAGACATGAAGGAAACAACGGAAATGTGTTTATCGGTCACAGCAACTGATT
ATGTTTTCACGTGAAAAGAAAACATATTAGAAATTAAAAATATATACCAGACACAACTAA
ATAGATATTTACTAGGTGCATGCCTGGGCATCAGAAAAAATAACTGCATGAATTAACAGC
AATGCCAGAAGAAGAAAAATATATATGGAGAGGACATGGCCAGAGTGTTGCTGCATTGCC
TACGTGCATACAGGCCACCCGAGCCCTATCTTTCCATGACCACAAGCCAAGCGTTCGTAC
TCGGATGTAGATAAAGCGATCAATCTCCGACTCAAATAATAACAATGAAATAAGAGAACG
GGAATTGATTGATGATGATAAGCAGACAATTTCCTTTTTTTCCTCCTGTCACGAACTAAC
CAGTAACGTGTCACTTTGCAAGGCTATCCTTTGGATTTCCAATCAATCTGCACCTGCACA
AAAAAGAAAAAAGAAAAAAAACAGAAACCAACAAGAGTGGACATAAGTTACTGCAAGGAT
CTCATTGGGGGATGATGGATACGTTCACATTACTAGCATGTCGAATAATCTAGCATTTAA
CTCTGATCATAGATCGACATTGAACATTTCTATTTACACCTGATCCACAAGGAATTGCAG
AATTTGAACGGCATTTCCACAATTGCATATCCAACGCCTACGCTTTCCAGTATGCTACTT
GGATCATGGAAAGGAGCTTCCAAAATATCGATATGTACAGGGAATGACTATTTACATTTT
ACAGCTTTACCAATTTTGAATCCCCGTGGGTGAGCGCACCGCGTGTCCATGCAAATCGTG
CATGCTTGAGGTATTTTCGATCATACCATGCCAAGCTTCAGCATTCCACAATGTATGTGA
ATGGCAATGTAACATTGTAGATACAGAGGCCAACAGTACCAACGTGGTGCACCTCCTCTG
CTCGGAGAGCCATCCGTAGCCGTCCATGCCACACGCTGCGGAGAAGTCGAGCCGCACTGT
CTTATAAATGAAACCTGTAGATCTGGATCAAATGGAAGCAGCCATATTTAAAAAATGCTT
AAACAGATGGCCATAGCCTTGGTTCAGAAACAGTGAAATAGTAGGTGCGGGGCCAAACCT
TTAACTTGGCTCGACGTCATTCATAGCAACCATACAATTGCTTGACATGCTATCCTGCTT
TTGCCATGGAATGTCTTTTGCCTGAAACTCTGAAAAAGGGTAACATAATTTGGGTAAATC
ACCTGTATTTTAGAGCTAGTTCTAAAAAACAAGTGTCAAGATTGAAAATGAGCATGAAAG
GGAATTTCAAGAGGTGAAAGCATAATAAGGAGAATGTTTCAGTTGCAAGTCAAGCATTAT
CATGTACTCCCTCCGTTCCATAATTCTTGTCGTGGTTGTCATGGTTAAACCACGACAAGA
ATTATGGAACAGAGGGAGTAACAAATTTTAAAATGTAACTACGTAAAACACATATGTCCC
TTGCAAAAGAAAGTAGTAAAACTGATTGGTACAACCAAAACTATAGCCAGGCAAAACTAT
ACAGTATCTTAAAAAGGAAAAATACATTATCTAAAAAGACAAAATATGTATCATTAATAG
ATAGTACTCCCTCCGTAAACTAATNNNNNNNCGTTTAGATCACTACTTTAGTTATCTCTA
AACACTCTTATATTAGTTTAC