| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_43517
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_59363 |
1 |
741 bp |
AK360138 |
Available |
Available |
None |
| MLOC_59365 |
1 |
354 bp |
MLOC_59365.1 |
Available |
Available |
LOC_Os02g44440.1, FRAME:-3, EVALUE:2e-19, 13102.m04961 protein retrotransposon protein, putative, unclassified |
| MLOC_59364 |
1 |
2299 bp |
MLOC_59364.1 |
Available |
Available |
LOC_Os10g37940.1, FRAME:-1, EVALUE:2e-38, 13110.m03459 protein retrotransposon protein, putative, unclassified |
CDS Structure of MLOC_59363
CDS Structure of MLOC_59365
CDS Structure of MLOC_59364
Contig Sequence (4755 bp)
>contig_43517 4755 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCCCCCCCATCCCCCCCGTGTTTTAAAACCGCAGCTGCTCCTCCTCCCCACCT
TCCCCTCCTGCATCCACCCACTCCCCACTCCGCCAAGAAACAGCAACAGCCACACGCCCA
CGCGCACACACCAGATCGTCGACAGCGATGGCAGCGGCAGCGGGAACGAGGGAGGAGATG
GTCTACATGGCGAAGCTGGCGGAGCAGGCCGAGCGGTACGAGGAGATGGTCGAGTTCATG
GAGAGGGTCGTGGCAGCGACGGGGACCGGCGAGCTCAGCGTCGAGGAGAGGAACCTGCTT
TCAGTAGCGTACAAGAACGTCATCGGGGCGCGTCGTGCTTCCTGGCGCATCGTGTCCTCC
ATCGAGCAGAAGGAGGAAGGGCGCGGAGCTGCGGGGCACGCCGCCGCGGCGCGCGGGTAC
CGCGCACGTGTCGAGGCCGAACTCTCCAACATCTGCGCGGGGATCCTCCGTCTCCTCGAC
GAACGCCTAGTCCCCGCCGCCGCCGCCGTCGATGCCAAGGTATTCTACCTGAAGATGAAG
GGAGACTACCACCGCTACCTCGCGGAGTTCAAGTCGGCCGCCGAGCGCAAGGATGCCGCC
GACTCCACCCTCGGTGCCTACCAGGCCGCTCAGGTATCCCCTATCTTTTAACTAGCTTTT
CTCCCTTCCTCTGATGAGCGGTTTGACTTTTTTTTTTTTTGGATCTTGGGTGGTTCCTTG
CTCTAGGACATAGCCATGAAGGAGCTGCCACCGACTCACCCCATCAGGCTGGGCCTCGCG
CTCAACTTCTCTGTGTTCTACTACGAGATCCTCAACTCGCCTGATCGCGCGTGCTCGCTC
GCCAAGCAGGTACTTCGCTGTTACTCTCTCACCTTCCGAGCAAGTTTACTAGTTCATGAA
CTTTGGGCAGTTCTATAACTTGGCACAGATCAGAGTCGCGGAAGATGCTAGAGCACCATT
TGTTTCTCCTTTTCTCCAATGCACTGCATATACAATGTTTTTCATTTCATATGAAGTAGA
TTCTTGTGCAGCTTAGGGAGTGGACATATTCTAATTGTTTGCATCCGCATATATATGATT
AATTTTCATGTGAAATAGTTGTAGATTCTTACGCTGCTTAGGTAGTAGAATGTTCTTCAG
TTACAATCACTTTCGGCAATATTGAGCTGCTTTGCATATTTGGTCATTTTTTTTGCGGGG
ATATACTTGTATTCATCAAACAGTAGGGTTACAATCAGATTCACAAACTTTTTATGCCTC
ATCAGGTCTTGAACCAACCAAACAGCCGTGCGGCTCTGAACCCTACCATAACTTGCCATA
GAATGGGTTATAACGGGAGAGAAAATAACACACGCTCTTAAGCCAATAACCATGACTCAA
GACCCAAATAGGTCCACGTCCTTTATTTTCACATGGCATCACATTTGTGTTGCTGACCGT
GGCCTCAGTGTTCACACAATGAAAACGTATTTGAAAGTGGTCAGTCCTAAGGCGTCTCTC
TCTCACGCACACTTGCTCGGAATAAGATGAGAAATATGTTATTTTCCCGTGAGGTTTTTC
AGAGGCGTGCATGCGTGGTTAACGATGTTTTCTTTCCTCTCAATCTATTTTTAATGGGTG
TTTTGTTTGATATTCGGATCACCGTCGGTACGAAAGAAAAAGGACTATGCACTATAGGTT
AAGTTTGCACCAAAACTAATATTTTAGAAATATTTAACACCTAAAAATAACATCATATTT
AGATTTTACATATATTTTTTAATCAAATTTCATATATAACATGTTAAAATCAAAGTTACG
GTTTAAAAGATATGGATAATTTTGTTTTAGATAAATTGCGAATTGATTAACTGAAAAGTC
AGATGGGTTTTTGTTAAAATGGAGAAAATGACTCGGCTGACTTAAATATGGACGGCGCGT
TGATTACCTAAAACGTCAGGTGATTTTTTGAGAAAATAAAAAAAAGGTTTGGTTGTGACT
TATACGTGTATTGTGGGTTAATTTATAGAAAACAGATGGGTTCTTTTGTAAAGTGGCAAT
TTATGGAAAACAGATTTCTTTTTTGTAAAGTGGCATGACGGTGAGCGGGCAGAAGCACTC
CGTGCTTTATTATTAGGTATAGACTAGTATTCCGTTGAAGTAGTTTCCTTTGGATCTTCT
TGATCAAGAAAGGTAGAGGAAGTCTCAAAAAGCGAAGGCTCACTCGCCCCTTACTTTTCC
TTTGCCACTATTACGAACCCACAGGTGCAGAGCGGAATTTCGCAAGCTAGGAGGAATAGA
AAAACTAAGATCGCTCGGGGTTGGATAATCTATAACCCTGCCTCACGTTACCTCCTTTCG
AGCCTACGACATTCTAGCCAGCATATCTCGCGGTCGAGTTTCAGTTTCTTTAACATATCA
ATTTCCTTGCTTCTCAACAAGTTGATGGCATCAAGACAACCCGATTCTACATTGATAGGC
AGATTGCTCCATCGTAGAGCTGAAGATACACCTTGAGAGATTGCTGACAATTCTAACTCA
AGGGCATTCTAACTCAAGGGCATTATCACATTTGATTAGGTGACTACATGCTGTAAATAT
GATCGCTCCACTTGAGGATCCACTTGAGTCTCTTAGGGTGTGTTTGGTTCAGGTCATCAA
GTGGAATGTCATGGGTCCGTCCCATACCCAGGCATGATTCTCGCATTTGGTTCGGTTGAA
CCAAGTCATTCCCTGGAACGACATATTCGCCCCAGATGCGGAATGTGTTGGTCCCTCCAA
ATCGGAGGAACCACACGGAACGCCTCGCGTCTCCCCTTATCCGCTGACTCGCTCTCTCCC
TCAACCAAGCAATGCTCCCCTCCCCCTCACCTCATATCTCGGCACACTCCTGTTGCTCGT
CTCCCCCCTCGACCAAGGGTCTGACGAGAGGAGGCGGAAGGAGGCGAGCGCTCGCGGGAT
CCTCGGGTCGGACCGGGAAGAGTGCAGTGGCAGCGTCCGACCTGGAGGTAGAGCAGTGGC
GACGACTATCGAGCTGGGGCAGAGCAGTGTCGGTGACGAGCAGCAAATAGGCGTCCTCAT
CCTTGCCGGCTGAGTTTCATGGTTTCTGTCAAGTGACACAACAGGTGGAGAATCCATTCA
GGTCCTGTTTTCAACAAGCGTGATACATCCGGGAAAGACCAGGAGGCCAACATCTCCTTC
CCGAGGGCTCTAGCCAAAGTATAGAGGCACATGGCATGAAAGGAGTCCTCATGATCAACT
GAACATAACGGACCATCATTGACTTCCAATTTTCTCGAGCGCTTAATGTCGCAATTTGGC
AAAGATTTGAAGCAAGTTTCTAGGAAAAAACTTTGACCTTCGGTGGTGCTAATCCTGCCC
AAACAAACTTCCACAGACACGTTGCCGTTGTGCGAGGAGCTCGAAGAACTCTAAGCAACA
TGTCTTTGCTCTTCCAACGCCATCCGATGTGTACTCCAGAACTTAAAGTTGCCAGATTTC
CCCCTGCCCAAGCAATGGAATCTTTAGAGTGTCAGGAGAGTTCTTATTTTTAGAATCTCC
TCAGCGTCAAGCGGGAAGTACCGCGAACAATATTTGTGTCCCACCAATTGATGTCCATTA
GCTCGGAAACCCAACGAAGTTTGCATCTTCCTTTTGGTGAAATCACTTTATATGAATGCT
TTCGTGGAATCCATTTGTCTCGCCAAATTCTGATTTGTGTGCCATTTTCAATGTGCGAAA
CCAAGCCCTCTTCAATAATTCAAGTCCATGTGCTATGCCTTGCCATGAAGATGAAGTATT
CCTTGAGAATACCATGTCCTCCAATCTGCCATGGGAGTAATATTTTACTCTTAGCACCCT
TGTACATACGCTGTTCGGGAATGCAATGAAGACAATTTAGTTAGATTTTTGTGGATGCTA
GAGTGAGTTGTTGAGAAAGAGCCTGATTAAATAGACGGAAATCTCGGAAACCAAGACGTC
CCATGCTCTTTGATTTGAGAAGATCACCCCACGACTTTCGATGCGCCTTTCTTTTCCCCT
TCTCAGATCCCCACCAATAGTTCCTAGCCATCGGGTTTAGATCATCACATAGGCCTAGCG
GGAGCTTAAAGGCGCTCATGATGAATGTTTATATGGACTGTGGTATATATTTTATAAAAC
TCTCCTTACCACCTTGTGGCGGGCAGCCCCATGAGTTGGCCGCGAGATCTTATGGGTTTC
ACCTCTAGCCTACCCCAACTTGCTTGAAACTAAAGGCTTTCTTGTTGTTGTTGTTGTTGT
TTTGAAACTTGCCTCTCACCATACGTCTATCAGTTGTGGGTAAGCCAAGATACCGTTCTT
CAAAACCAAATGTCTCTATCCCTAGGGTATCATGGATATCAATCTGTTGAAACAATGGGC
AGGCGGAGCCAAACATAATTGTGCACTTAATGTTATTCATTAGCTGACCTTGGGCCAAAG
CATACTTGTTGAAAATATTTATAACTTGGACTGCTTGCTCATGTTTAGCCTTAATGAATA
GTAAGGTGTTGTCTTGTAATTAATTTGTGGGATATACCTGATGCTCGTCGACACACCTTA
ACCGGTGTTACATTTCATTGGGCTATTCCTTCCTCAAGCAGAGCAGAAAGGTCATCAAGA
GAAACAATAGGGGGCGTGTTCTTCAGATACAATGTACTCCCTCCGTCCCAAAATNNNNNN
NNNNAGCTTAGTACAACTTTGTATTAGACCTAGTGTAAAGTTGAGACAGTTATTTTGGGA
CGGAGGGAGGACTAT
