| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_43513
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_59359 |
1 |
1933 bp |
MLOC_59359.1 |
Available |
Available |
LOC_Os06g13540.1, FRAME:+2, EVALUE:2e-50, 13106.m01489 protein retrotransposon protein, putative, unclassified |
| MLOC_59362 |
1 |
279 bp |
MLOC_59362.1 |
Available |
Available |
LOC_Os04g54230.1, FRAME:+3, EVALUE:2e-13, 13104.m05605 protein wound induced protein, putative, expressed |
| MLOC_59360 |
1 |
503 bp |
MLOC_59360.1 |
Available |
Available |
LOC_Os04g54300.1, FRAME:+1, EVALUE:6e-36, 13104.m05612 protein wound induced protein, putative, expressed |
| MLOC_59361 |
1 |
1660 bp |
MLOC_59361.1 |
Available |
Available |
None |
CDS Structure of MLOC_59359
CDS Structure of MLOC_59362
CDS Structure of MLOC_59360
CDS Structure of MLOC_59361
Contig Sequence (10032 bp)
>contig_43513 10032 assembly3_WGSMorex_rbca.fasta
GAGGTGCTCGGGGGTGTGTGTGCGGCGGCGACATCAAGCGGAGTCCGGTCGGGCGGCGTT
GGGTGGGGGCGGCACAGGCGGTGTGGAAGATCTAGCGGGGGAATGGGTCGGCGTGGGGGA
TCGAGGTAAGGGTGAGACAGTTGAAACGGATAAGATTGTTCTTTGGTGGGTCGGTTACAA
CAAACTACTGTTAGCGTCGGACATTACCTATGACATTAGACAAAATTGCAACTTCAGCAT
TAAGTCAACAGCTATGACATGCGAAAATGGGCTACATGCCAGCGCTATTTGAAAAATATA
GTATTGATGTCGCTACAAAATGACGTGTCACCAACATAAGTTGTGGCTAACCATTTATCC
ACTAATGCAACTATAATAATGATTACTTAAAATATAAATTATAAGCATATTTTGTTTTAG
TTACCTTAAGTAATGACATTGTTGTTTTTTATCCATATGCATTTTATTCGTTTGCTAACA
AAATGTTTTTTTGGACTGGCTGAAGAGAGCACAATAACCAATTTAATTTCTCACAAGTTC
GTTTAATTAGCAGGTTTCTATGCTAAAAAATTAAAATACCATTTTTCCATTGAAGGATTT
TAAAAAAAAAACAACTTTGACATCTAAAGTTTAACTGGATTTTGAAAAGATATATATGTT
ATATAAAATTTAAAATTCAACATAGTATGTCAGAATTGTTCTGAATCATAAATATATTTA
TTGTATCTCATAAAAAATTACGCAGTTATTAAAATAGTTCACGTAGAACACTTATGTTAT
TTGCTTATATATTTCAACGGAATTCTTCTTCTAGTTCATGAAACATGTCAATGTTGCTCA
CAAGACTTGTTATGATGTTTATTGAGAAAATACGTGTGTTGATTGACCCAAAAATTGTTC
ATGGATCTTAAAATTTTGTTTGTTACTGCACAAGAAAAATCTTTTACCTCATAAATCTAA
TAACACAATGAACACATTTTATGTTACATATATTTAACAAATAATGAATGTTCATAGGGA
TATATTTAAAGAAAAAACAATGGGTGTTTGTACTAAGCAATTGTTTTGTTGTACAAAAGA
ATTGCATACTACAAAGTGAAAACGTCGTTTCCTCTTTCCATAGGTATGGTGAAAAATAAG
GAAAATATATATGAAATGAAAAAAGGTAAGACAGACTAAAAAGAAGTGATAAATCATGGG
GAAAGAAGAATGGCAAAGAATAGAAAACCCAATAAAACGGAAATATCAACGTCAAGACAT
GTAGATGATATACCATGTAACATGTCGAGGATGCACCGATACCTCTTTTCTTCAATCACT
CCCTGGGCCTCGTGGACATCCACTACTCATCGCAACTATCTTGTACCCCACCTTCTACCC
ATGGTTGGCAACTAGCTAGTTACAAGGACATCGATCCCTTCAGTGCCAATGAGCTATGTG
TTAGTTTGTTCTTTTGTCGATTCAGCCTAGTTTATCTTTATGCTAACCTAAGTGATGAGG
TCATGTTGTTCCGAGAGTATATAGGTTCCAGCAATTGCTACTGCAGAATTTCAAAGAAGG
GCAATGAAAAAAGAGTGGCATGTGATATTTCAAATAACAGCAATCGACAAAGAATGGTGG
CATCAAATCTTGCTCAAAATGAGCACCAAATACCCCATAAATTACAACACAAAATGTACA
TTTACATATTTTAGTACTAGATAGTTGAAGCATATCTCTCGCTTGCTATAACTCTTCTTT
GCAACGCACCAAGATATACATAATACATGTATAATTCTTCTTTGAAAATTTCAAAACATA
GACTTGTTTCTCAGATGGGAGTAGGGATGGCAATGGGTACCCATTACCCATGTATCCTGC
GGGTAAAAACCCTATTAGGGTAAGGGTATGGGACAAAAAATTACCCATGGGGTATGTAAA
TAGGAAAATCTGAAACCCATCGGGTAGAGCGGGTACGGGTATGGATCATATAGCCCATAC
CCACATACCCATGTACCCATATGAAATCTTTGTAAAATCAATATTATATCTACAATCTAC
ACTATGTCAAGACTTTGTGAAATGAAAATGTATGACTATGTGTTGTTGTTTATGACTATA
TGATGTTGTTTATAAGTATATGTTGTTGTTACAATCCATTTGTGTAAACTATGATTATAT
GTTTTTGTTTATGATTATATATTGTTCAACTTGTTGATTTGCAAACATGGGTAATTTTAA
CCGCGGTTATCCGTCTACCCTATCGGGTAAAGGGTACGGAAAAAAATTGTATTCGTTGAC
GGATATGGGTAAGGGTGATGGGTAAGCTCAGGGGGGACGGGTAATGGTATCGGGTGGCTC
CACCCATACCCATACCCCGTGGGTGCCATCCGTAGATGGGAGAGCCTTGCACTCGTGTGC
ACTTCAGTTAAGAACAACCTTAAGAAACAATGTGAATGGAACAAAATACACTACAAGTGA
CCAATATATGCAATAACCAACTAAGCTATTCTTGCATCATACTTAACATCTGATGCATTA
GTTACACAACGTATAAGAGAAAAAGCAAGAATATAAAGAAAAATGACAATACAAATTAAT
TTTGACACGTTTAATGGATATTAACTTGAATACGCATGAATTACGACGGCCTGCCATGGT
TACGGTTGTATAGTGATTATGGGCTACATCCATCGACCGAGTTCTCTTGGTGCAGAGCTT
TAGCAAGATGACTCCATGTTGTACCTCCATCCCAAATTTGGTGACCACCGCGCACCGTAC
CTCGCAGAAGAACCTTGATCTTGATATCTTCAACCCATTTTCATAATCTACTTCTCCCGA
CGCACGACTCGACCTTGGAGAACTTCTTCTTGGGAAGAGAGAGTGGTAGAAAGAGAAGAT
GGTGGAATGAGTTAAAAACAACATGAGAGGTCAGTCTGCTTGTGCGACAAGTAAGCAGTG
TGGTAACATTGTACGTGCGTTCAAGGTGTCGATTATCATGTCAAAACAATTCAAATGGTT
GATTTGGGTGTGGTGTGAAAAAATAGGACATTACTTGTGGTTCATGGGAAGAATTTCAAA
ACATGTGGGCTATGGTTGTGTATGATATTAGCCACAATTAAATTAATAGTATTTTATTTC
TTATTTTTATATGTGAAAAATAGCTACTTTTTTCTTATAATACTAACGTTTTGCAAGGTC
ACCTTGAGTAGAACATACACCACACTCACCTTCTTTTTACGGTAACTGTCATTTCTAAGT
CACCCGAGAAACAATTATCACTAATTCGACCAAACCATATGTTACTTATGAGACATACAA
CTACTTGCTTTACATAGAATAAAAATTACTGGCACTTTTGTACTGTGAATGAAAAAAAAA
TGCACTTATAAATAAGATTTTCCAAGTCTGCTTTTAAACAGACACTCATAGTTTTTGCAG
TTTCTAAGAACTTTAGGATGCCTAGAAATCGACATGAGAGCAAGGTACAGATTTAGCCAT
CTACATAATGCACCAAAAAAGAAAAGAAAAATCAAACAGCCGAACTATGTTTGAAAAATC
ATTAAAATTTGCACGTACTCAAAGAACGAAAATTTTAGAGAAGTTGTTGATCTTATTTCC
TTGATCTGACAAAAATTATAGAGAGAAGAGATGGACTTGCACGCTGAAAAAGAAAATCTC
TACTATTCAAGGACTCTGTATCTGCCAGTGGACAAAACCAGCCGCTCTCCCGCAGAAAAA
ATAAGATGGGGCGAGGTGGGCAGCCACCTGCACCGGCTGGGCGTCAGACAGCGAGAGGTG
CGGGCCAAGCAAGCAAAAATGGATCCGAAAGCACCTGTGGTATCCTGGAAAACCAGCGCC
CACAGCCGCCTGTTTTGCTCCGGCTCTCCCGTATATAACTGCATCCCACTTCCAATCTTC
CCACCGTCAACACAAACCAGCATTAGTTCAGTGAGACACTTCAAGAAAATCAGCTCTGTT
CAACTTCGCAAGTCCACTACTACTTACTACACACAAGGAGCACGAGTCGGTTTCCACTCT
CCAGCACGCAGCAAGAATAAGAAGTACTATAGGAGAAGCGATGGCTGGTCCGGCGAAGGC
ATCGTGGATGGTGGCGATGAGCGTGGGCGCGGTGGAGGCGCTCAAGGACCAGGCCGGGCT
CTGCCGCTGGAACTACGCCCTCAGGTCCATTCACCGGGCAGCCAAGGCGAACGTCCGCGG
CGGCGTCGTGCATGGCCCGAAGCAGCTTCCAGCCTCCCCGGCTGAGAGGCGGCGAGCGGA
GACGGACGAGGAGGGGCTGAGGACGGTCATGTACCTTAGCTGCTGGGGACCTAATTAGGA
GTACTAGTAGTACCTAATAGGGATGTTGTGTTCGTTGCAGCAAGTAACTTAGCATTAGTA
AAGCATGCAACCATGGCGTTAGACTTGGTTGGTTGCCCCTGATCGGTTGTAAAGACACCA
CGACAACGATGATGATGAAAACTTCGGCTATCAGTTTATAATTTATATTACCCTGCTTGT
CCAGCCATTTGCTTCAGTGGCTTTTTTGAAAGGTCAAAGTCCGATCCGTATCAAGAGAGG
GAGAAAGTTCAGAATTACACAGGGAGATCAACTCAGCAAAGCGAGCCGTTCTGCTGAAAA
CAGAGCAGCTTCAGCTGCCTGTACAAAACAGCCAAACTCTGAACCAAGGAAACAACAGTG
AAAAACAGAAAAGGAGTTCGATCTCAGGTCTTGTCTGATCAATTTGAACACCTCAAGGTC
CCTGCAATGGAGCCCGTTAGAGATTGTGACGTTGTGTTCCTTCCAACAATTTTTCTTCTG
ATTATTTTGAGGTTGTATGCTCTGCATCGGTTTCTGTTGCTCCGAGTTGACTGCCGATCC
ATGTCATACTGAAGGCGTAAGTGAGACGGCGAGGGTGAACCCAGGAGGTCATCAAGCCTT
AACCCAACGATCTCTGATTTCTTACATGGTATCGGAGCCTTCTCTTCTACATCGCATCTA
GATGTCTCTCGTCCCCTTCAACAGTTCCTCGGGAGCTTCTTCCTCGATCAGCCAGCCCAT
GGCGACGCTCGGTGACACCTCCCGCGAAAAGCTCAGCCGTGACAACTTTCTTCTGTGGAA
GACGACGGTCCTACCCCCAATCCGAGGGGCACAGCTCGATGGATATCTCGATGGCTCAAT
TGAAGCTCCGGCCAAGACACTTGATGTACAGAAGGCCGACAAATCCGGCACCGAGACGGT
GCCAAACCCCGAGTACGCTCGCTGGATAGCCCAAGACCAACAAGTTCTTGGATCGCTGCT
GCTGACCTCTCTCTCGTGCGAAGTTCTAACTCAAGTCGTCTCCATGAAGACGTCTGCGCA
GGTCTGGAGTCTGGACACCTCTTGAGGAGATGTATTCCTCCATCTCTCGGTCACGAGTTA
TTCAACTTCGGACCAGTTCGCCGGCACTCGGAAGAACGATATGACCGCCACCGCATACTT
CACGAAGATGCGAGGTATTGCGGACGAACTCACAGCAGCAGGGAAGAAGATAGAAGACGA
CGATCTCATCTCTCAAATCCTTGCTGGATTGGATGCAGAATATAATCCCTTTATCTCATC
CATTGGTGCCAGAACCGATGCCTACTCCTTGAGCGAAATTTATGCTGAGTTTGTTACCTT
TGAAGCGCGCCTGGAGTCACAAAATTCTGGGTCACAGCAGTATAACTCGTCAGTGAATCT
TGCTGCACGAGGAGGACATGGCAAAGGAAATCGTGGAGGAAGAAGCAGTGGTGGAGGGAA
CCGTGGTGGCTTCGGCAACAACAATCGCGGAGGGTACAACAAATATGGGAACAACTACAA
CCACGAGAATAACAATTACCACAATAATAATCGCGGCGGAGGACGCTCAGGTCCAGGAGG
TGGAGCGAATCTTTCCCGCAGTGACAAGCCTACTTGTCAGATTTGTGGTAAGGTTGGGCA
TCCAGCTCACAAGTGGTGGTATCGGTTTGACCCCAATTATGTCACGGAAGAGAGATATGG
TGGAGCAGCCACTACTTCATCTGGAGTTGACTCCAATTAGTACTTTGATACTGGAGCAAT
TAATCATATTAAGAGCATCTCTAGTAGAGCCCTCAAACCGTTTTTTTACAGTTTTCGTCG
AAAAAACGGCGTAGACTAGAACNNNNNAACCCGTAAAAAAAATTAGAGGTCCAACCCAGT
TGAACACAAACGAGCATCAGTTCAGTGAGACACTTCAAGAAAATCAGCTCTGTTCAACTT
CGCAAGTCCACTACTACTTACTACACACAAGGAGCACGAGTCGGTTTCCACTCTCCAGCA
GCGCAGCAAGAATAAGAAGTATAGGAGAAGCAATGGCTGGTCCGGCGAAGGCGTCCTGGA
TGGTGGCGATGAGCTCCGGCGCAGTGGTGGCGCTCAAGGACCAGGCCGGGCTCTGCCGTT
GGAACTACGCCCTGAGGTCCATCCACCGGGAAGCCAAGGACAACGTCCGCAGCAGCGTCT
TGCATGGCACCAAGCAGCTTCCGGCCTCCCCGGCTGGGAGGCGGCGAGCGGAGATGGCCG
AGGAGGGGCTGAGGATGGTCATGTACCTTAGCTGCTGGGGACCTAATTAGGAGTACTAGT
AGTATCTAATAGGGCTGATGTGTTCGTTGCAGCAAGTAACTTAGTATTAGTAAAGCTTGC
AGCAATGGCGTTAGACTTGATCGGTTGTAAAGACACCACGACAACAATGATGATGAAAAC
TTCGGCTATCAGTTTATAATTTATATTACCCTACTTGTCCAGCCATTTGCTTCAGTGGCT
TTTTTCGAAAGGTCAAATGGCGATCTGTATCAAGAGAGGGAGAAAGTTCAGAGTTATACA
GGGACATCAACTCAGCAAAGCGAGCCGTTCTGCTGAAAACAGAGCAGTTTCAGGTGGAAC
CAAACTCTGAACCAAGGGTAGAACAGTGGAAACAGAAAAGGAGTTCGATCTCAGGTCTTG
TCTGATCATCAATTCGAACACCTCAAGGTCGCCACAATGGAGCCCGTTGGAGATTGTGAC
TCTGTGTTCCTTCCAACAATTTTTCTTCTGGATATTTTGACGTTGTATGCAGTATGCTCT
GCATCGGTTTCTGTTGCTCCGAAGGCGGATGGGAGGGTGAGACTTGGAACAGAGAAAGGA
CACGGGAATTCTGATTTCACTCATCGCGTGCCTCAGCCTTTACGCACTCTGTATGTCTGT
ATGGTGATCAGTTGTGACACGGACGTCCTGCCCCAAGAGATAGTTGGTGGCGAAGGTGCT
CTCAATTCCTTTGCTATGCACTCTGCTCACCCGACACGACGATATGTAAAACTACATGTG
ATCAGAGTGCTGACATTTCTTTTCCACAAACCAGTAGAAGCTCTGCCTTTGCATTAAGAA
GAACCTTATAAGAAAAACTGACCGAAAACCAATAAAACCAATACAACGAAACACATACCA
ATCCCGAGACTGAGGACCCAAACGAGCCGATGATCCTATCGCCCAAATGATCAGGGCTGG
CACCCTACCCCTCATGTCTTACAGCGGCCACGCCGACCCTGAGTCCACACTATGTCGACG
ACTCTGGTGTCCACACGACGAGAAATGTCACCCCACAATACGTAGGTGCTCTCCGGAGCC
GCCGCTTCAACGATCATGTCGCTCACACGATCAGATCCGACACTTCTCAACATTGAAGTG
CTCTCCAAAGCCACCACTCTGACTTCCCCATCGGTCTCGAGGCCACGCACCTGCCTACCC
GACAGACGAAACCGAGGGACCACACGAGGCACCAAGGTCTGACAGAAAACTGGAAACCCA
AGACGACGCCCCAAGGAGGATGCGTCGGAGGTGTTGATGTTAATGAGTTAGTTTTTCCGT
TAAAAAAACATACGTAAGTTAACTAAACGGGTCTAAAATGAAAGCGAGACCCCTTGGCAC
CCGCGTCGTCCTCTGCGGGCGACACGTGAGGCGTTCCCATCCTCGCCGCCTCACACTCTC
TTTTCGCCCTCTCTCTCCTCGCCGCTGGCGGCTAGCAATGTAGGGCAAAGCCATGCGGAA
GGCGGTGGCCGGGGGGCTTCTCTCCCTTCGTTGCATCCTTTTTTTCATCCAAGGCGGTCG
TACATCTCCTTCCGATGGTGGTGTTCATCGCTGCTGGTTGGGATCTATTCTTCGCTTGCT
GTTGAGGTTTGGGGGGTGTGGCGAGGGGCTGCAGCCGCTCATCCTAAGCCCTATGTCGTT
TGCCCTTCCCTGATCCGGTCATGGCTCTTTCCTAGATCCAAGTGTGATCATGCGGCAGGA
GACATACCCTTCCCCTGTACGGTTGAGCGCTAGTTGGGTCATTATGGGCCAGGCAATGCT
CAGATCCGGCAAGGGGTCCAAGCCAGGAGCGATGCGATCGTCCCGCTTCCGTCGGTGATA
AGTCTTGTTGTGACCATGCGGGTATGCGGTGGCAGCTTTGAGGCACATTGCATGGCCATC
GTAAGATCTTTGTGAGGGTTTCTCCCTTTCTGATCCGATGGTGAGATGCAAACTATAGAT
GACGGCTTGATGTAGAGGAATGGTTGTGTGGTGGCTTCAACGCATGTAGCTACTGAGATC
GCAGAAAAGTGATGGTGACAACACAATTGAAATCGATGGTGGTGTCACCCGAGCACCCGA
TATCGAGCTCCGCGGTGAAAGCCAAGGTCTAACGCAGACGGTTATACGTGACAATAACTA
TATCCCTATGTTATTGCCTTGTTGAAGACATTGCTCAGATATTTTTGGACAGGTTCTTCA
AGGTGAAAACCTAGATTCTGCCTTGGGTGGTTGGATCCGGCAATATCCCTATGTTACTGA
AAAACACCGTCGTTCATGTGGTGTCATGAGATGCTTGATGCGAATATGGTCATGATTGTA
GTTTGTTGACCATAGTTTTGATTGTTTTGGTGTTTTTTTAGCATAAATATAGTTTTGGTC
TTATATGATTTTGCTATTTGTTGGCTTATTTTTATGTGTATGTGTTATTATTGTTTGTGT
GCATTCTACTTATGCAAAGATCAGGTGTGTATTCATTACGTTTGTATTCTTTCGATGCTT
TATTCTAAGTCAATAAAATTCATCTTTTATCGAAAAAAGTAAACGTGCTTTCTGACCGCG
GTGCTGACAGAACGAGAGTGAGAAACAGAACATCCCGCTTGGCCGGCAGCCTCAGGTATG
GTGGAAACCATGGCCTCGGGCCACTGGTATTCGCTGCCCGTCCGCGTCTCCCGTACCTCC
GCTCTCACCATCACCCCAAAAGCATGTGGCCAAAAGGTGTAGTTTTAGTTTAATCATACG
TGTGAGACTGTGACTACGAGTAAACCGCGTTGCAGATAGGAGGATTGTCAGACTAATCAA
TAATCACTTGCTGATCACATCCCAAGATGGGGAGAAGATTCCGGGACGGTGCGTGCCTTG
AGTGGAATGAATGAGTTTTTTTTATCATCCTTCCCGTGTGCTAAAAGCAAGGCATTTCAT
TCATGGGCCACCACCAAGCCTGATCGGATCTCATCTGATGTAAGTAGCACAGAGTACCGT
GGATAGATCCCACAGTGCCAGCAGCACACAACTTGTGGCACAAGCGGCACGGCGCATTTC
TTACCCTCGGCGTGCGTCCGACAACAACCTGAGGCACCCGGTTTCCGCCCACGAGTCCAC
AAACCGTGCGCGCGCCGGCCGGCACGGCTACATGCCGACATCGGCATCTCCTATAAAACT
GCCATGCGGATCGCCGCCATTTGGCAGGCAGCCGAGCACACTCTCTCTCTCTCACACACA
CACCATCGAACGAAGCACTCACTCGAGCACGGTGGGTGACATCCACAGGACTACAATCGT
ACAGTTAGTCAGATGGCGAGCGGCGGCGGCAAGGCGACCGGCTCGTCGTGGGCGGCGGCG
ATGAGCGTGGGCGTCGGCACGGTGGAGGCGCTCAAGGAGCGGCATGCCGGGCTGTGCCGA
TGGAACCACCACGTGCTCCCGGGCGCCTTCCAGCAGCGCGCCGGCACGTCAGCCGCCGGG
AACGGCGCCTGC
