Map Locations of contig_43495 (9945 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_43495

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_59339 2 2972 bp AK360828 Available Available None





CDS Structure of MLOC_59339






Contig Sequence (9945 bp)

>contig_43495 9945 assembly3_WGSMorex_rbca.fasta
TGTTTGAAAATACAATAGATTATAAAAATCAGATTATATAATCTGGGTGGTTCCAAACAG
GGCCTAAGTCCTATATCATTGATCTTACGTGAGGATTCATGTGGGTATTTTCTAATTTTT
TATGCTTGATTTAATTATTTAGATGTGCAATAACTATGTCAAAAGTAATTGCTTTTTTGC
ACGCCAAATATCATGTAACACAAGGATCCCGAGGTCATGACGAAACACAAGACCCCTGTG
TTGCCTACCTAGGGCGACATGGGGGGCTACCACCACCGCCATCACTTGCTCCGGCATCCC
GGCAACCTCCTCTCGTCGCCACGAGTGATGGCGCCGCTGGGCAGCCCTCACGGTGTTAGG
CGGCGACGACGCCCTTCTCCCGTTCCCCTTCTCCTCCCTGCGTCTCGTCACTTCCATCGC
TCCCGTACAGGGATACCCCGTGAGATCTCTGGCACCGTCCCGGGCCACCCCTTCACTCGC
CGTCGCCGGTGTGCTAGACGGTGCTGTTGTGTGGATCTCATCCTGGGGTGTGGTGGTCGG
CACCAGGTGGGCTCCGGCCTCGCTGCAATCGAGGTAGTTGGGCGCTCCTAGTCTCCAATG
GTGCCTTCTTCAAGCTGCAGTGCGGGCCGCGAGTCTTGGCTCCCACTCAGATCCGTTGAC
GGCACAACCCATGGTTGTACGACAGCGCGGTTGGAGGCCGGCACAGAGCTGGTCTACGTG
GCCCTAGTGGTCTTCGAGCAAAGTTACCGTTCTACCTGTGATCAATCCTCTTAGATCTGT
CCATCGACAAGTTCCGGGCATCTCCTTCGAAGGAAACCAAGGACTGGTGTTTATGACGCT
TTTTGGACACGTTGTTTGGATTGGGGCCCATCGTGTGCACCCGCAATATCAGCATAACCA
ACTTCACCAGGGTATCACGAAGCTCTGTTTTTGTTGACACGTTGAGACATGTCTGCACCA
AGATTTCCAAGAAATCAATGCAAGCAAAGAATGCCATGGCGTGATTGGAGGACGTGCAAG
CGACAATGGTGGGGTCTTGGAGATGATGAAGACTTTGCTTCACATGCAGTTGTTCGGACT
TGGCTTGCGAGATATGTTTCCATCCACACCGGGCACTAGTTCCTGCGAGCCTGGTGCTAC
GTGACTTGTAATAGTAGCCTCCGCAAGTGGGGGCGACAGCGTGGGAGGAGTTCGTTATTG
ATGGTGCTCCTTTGTGTAGTGAGTTGTGATTTTAGGGTGAAAATCCAAGGTATGACCCTT
GTTAGTTATGCCTGACACTGGCCTTGTTGACGGCATTATCGCTGGGAACACAGTCTTTCT
CCAGAGTAAAAAACATACGATCTTTGACCGGGCAATACTTGCATTGTTATCTTCTTCCTA
GAGATGTTGCTTTTGAAGAGCCTTCTTTGTAGTTCGGGTGATGTCTTGGTGGTGGATGTT
AGAGATATATTTGGTACTTAGAGATTGTCCGGGATTAAATTAGAATTATTTCCATCTTAA
CTCTAAGAGGTGTCTTGCCCTTCAAGTCTTGCATTCAATATATACCCGTCCTTGAGGCTC
AATAATACATCCATCACATTACGCCAATATAATAATCCCTCTCTATATCCTTCTAACGAT
GGTTAGAGTGCTAGTCATTGATCATCATGACAGGGTTTTTTTTTTTGCTGTGTGCATCTT
GGATGTTTTTAAGCATTTTGTTGGTGTGGAGGCTGGGTATAATTGACATCTACTTGATAT
TAATATATTTCATTTTTAAACAATTATGTAAAAGAAGTGTGAATATCATGAAAACTCACA
ATTCTTCTATGTAACCGTGTTTACTATTTTTTGGTATTTTCACCAATTTACATTTTTCAC
ATGGTGCCTGTTAATTAACTAGGTGCACATTTCAACCGTGGGAAGGAACAAGATGAGGAT
TTCATGGGTGACGGACGACCGGGACGCGCCGTCGGTGGTGGAGTACGGCGAATCCCAGGG
CAACTACACTGCGTCGGCGACGGGCGACCACGCGACGTACAAATACTTCCTCTACGAGTC
CGGCGCTATCCACCACGCCACGATCGGCCCGCTCGCGCCCAGCACAACCTACCACTACCG
GTGCGGCAAGGCCGGCGACGAGTTCACCCTCCGGACCCCTCCGGCGTCCCTCCCGGTGGA
GCTCGTCGTGATCGGCGACCTGGGCCAGACCGGCTGGACCGCGTCGACGCTGTCGCACAT
CGGCGGCGCGGACTACGACATGCTGCTGCTCCCGGGCGACCTGTCGTACGCGGACGCGCG
GCAGCCGCTGTGGGACTCGTTCGGCCGCCTCGTGCAGCCGCTGGCGAGCGCGCGGCCGTG
GATGGTGACGGAGGGCAACCACGAGGCGGAGGCGCTCCCCGGCGCCGTGGGCTTCGCGCC
CTTCCTCGCCTACAACGCGCGGTGGCGCATGCCGCGCGAGGAGAGCGGCTCCCCCTCCAA
CCTCTACTACTCCTTCGACGTGGCCGGCGGCGCGGCGCACGTCGTCATGCTCGGCTCCTA
CGCCGAGTTCGAGCAAGGGTCGGAGCAGTACGCGTGGCTGGAGCGGGACCTCGCCGGCGT
GGACCGGCGGGCGACGCCGTGGCTGCTGGTGCTGCTGCACGCGCCGTGGTACAACACCAA
CCAGGCCCACCAGGGGGAGGGCGAGGCGATGCGCGCCGCCATGGAGAGGCTCCTCTACGA
GGCCCGCGTCGATGTCGTCTTCTCCGGCCACGTCCACGCCTACGAGCGATTCGTAAGCAA
GCCTTCTTCGTATATTTTTGCTCCATCCATGAACAAAACTAATTTTCTGGCTGATGAACT
CATGAATGAAACAGACGAGGGTTTATGACAACGAGGCCGACGGCCGGGGCCCGACGTACA
TAACCATCGGCGACGGCGGCAACAGAGAAGGGCTTGCTCTCAAGTACGTACGCGATCGAT
CGATCTCAGTTTCACGGTTGCGGATTTCCTTGGGCTTCTCTTAGATGTTCACTGAAGTGA
TTTCTTGATTCTTGTTGAAGGTTTCTCAAGGACCACGAGTCGGCGCACCTGTCGGTGTTC
CGGGAGGCGAGCTTTGGGCACGGCCGGCTGAGGATCGTGGACGAGACGAGCGCCGTCTGG
ACATGGCACCGCAACGACGACGAGTACGCCACCGTCCGCGACGAGGTCTGGTTGGAGAGC
TTGGCTAGTCCAAACCTATCCATGCCTACCGCCCGTCGTCACGACCAGGAGTTTTAGCTT
AGAATGTTGCAGATCAATAAACACCCTAGTTTTGGTACCGCTGGGAAACCAGCTCTTTAA
TTGGGTCATTCGATTCGACGGCACTTCGTAGAATCCTCGACAAAACACTTTATAAAACTT
GGTTCAATCCTTGGCTCAATTTATTTACCCAGGAGCAGAGTTAACCACTCGGTCTTTTTT
TCGATCCAAACGAAACCAAAACACGAACACACATCTGGTGTGCACGTCAGGTTCTAAGGA
CATCTCCAATGCCAACCCACAAATTCCTTTGATATATGCCCGTTTCTGTGTCCAAAAGTG
GTCCGCACACATGATATCGGGGAGAGTCACCCAACACTAATTACAAAGTATACAGCCGAG
AGAAAACAAAATAGGTGAAGATCATGCATGTGGTGGAGATATTTGTGGTTTAGTGTTCGG
CTGGAAGGAAAAGAAGAAAAAAAATCATGGATGTGTGGATGGAAAAATAGAGAGAAGAAA
GAGACATGCATGTAATTGATCAAATGCATGTTTGGATTTCCGCAAAGCTCCCCACGTTTG
TCTCCCATTTACTGAAAAACGGTCGTCTGAACTACTTCATAAACCGATGCAGGACCACAG
GACCATGTTGGACTATAAAAATAGTTAAAAATGTTTGATCAAACATATATCGAAGTTTTA
TGGGTCTTCCTTGAAGATGCTTTAAGTATCACACATGACATAGTAGAGAAAACTTAAAAC
AACAATCACACAAACTATGGTTCTTCATAGTACACAAGTCCCAAACGAAAACCAAGAACA
AAGGAGCCCAATGCTCGAACATCATCGGGTCACGGGTGCAAAGACCACATGGATCTCATC
CGCCATCTACGGATTGTTCTTCAGCTCTTCCAGCGTGGCTTGTCCCCCATGTGCAGTACC
TTGAATGAATTTTGCCCAGGATAAATGACGCCGGGTTTCCCAACAAATCAGTCTGGTTCC
AGTTCCACAGGTGATCGTAGCTTCAGGAGTATGTGATTTCTGAATTGCGCGACTTGGCCA
CCCTACAGTTCCTTGTGAGGTTTTGCCCATTACCCCAGATATTGGACTATCTTCTCAGGG
CCGGTCCTGTGATTTCGGGGGCCCGGGACGAAACTATAACCTAAGGCCCTTAATATGACT
GACAAAATAATTAACAATGTATACATGTACTCTCTTCGTCCGGAATTACTTGTCACACAA
ATGAATAAAGATGTATGTATGTAGAACTAAAATACATATAGATACATCCATTCCTATGAC
AAGTATATTCGAACGGAGGAAGTATACATTAAATCTTTTTTTAGTGTAAATCGGTAGGAA
AGGCTCCTACTGCATGTATATATGAAACACACATCTTACATGTGCACAAGTGGGGTGGGG
GTGGTGTGCGTGGGGAGGTTACAACTTAGGAGGGGTCAACTAGAGGTGCAACAATGGTAT
CTATGAGTACCTTGCTAGCAGGCATCCTAAACCTAAGATCAGAAGATGGCACACCCCCCG
TAAGATGTTCATAGAGGCCTTCCTCGTGGCGGCTTGGAGTTTGTGGAAAGAACGTATACA
TATATGGTATATCCTCAGGCTGGAGAACAAACGTCAAACATAAGTCTGGTCGAACGGTGT
GAGTAGAAAATGGCAAATGGGCTATTATTTTTGAAAAAACAGCAGTCAGGATTTAATAGT
TTATCAATCACGGTTGTATGGTAAGTGTAGTTCAGAATTAGAGAATAGGAAAAGGATCCA
ACGATACACAACAACACTAACATGAGTTAGTCAGATGAACACCTACTCATTTTAAGTCGT
GGTCTTTCTTACATAAATCCAACAAGAAAGAAGATAGCGTTGTCTCCTGCCCGTTCCATT
CTGATTCTGATGTTGCCATGTATGTTCATATCCTGAAACTTTACTTGTATCAACATCGTT
TCCATGAGCCCATCTACATTACTTTAAATCTGGATACGTAGGCAATATGTACTAGATTAG
ATCGATGTCTACATAGGAGGAATCAAGCATTGTTGAACGGAAAGTAGAATGGGGTAATGG
CGCCTTACGATTTTGGATCTGCGGCTCCGCGCGGAAGAGCTCCACGTACAAACTCGTCCC
ATGAATCCAAGTATGCCGTCGTTGCGACGACGCTGGCCAGACGGATGCTAGGGATTCGCC
GCGATCTTGTGCGGTGCCATAGAATCTCAAGCGGTTGCGGAGAGCCAGGGAAGAAGAATG
GGCTGCGATCTCGAGCATGCGTTGTGCGCTATTACTACTCTACATGGGCCTTCGGTTGTT
GGGCCATACCCAATACGACAGCACACCCCAAGTGGGCCCCCCTTTGTTTTGGGGGCCGGG
GCGGTCGCCCCTCCCGCCCCCCCTCAGGGCCGGGCCTGTATCTTCTGCCACACCTGTTTG
ACAGAAATCCATTTAGTTCTATTAAACACAAGAGAATTCCTAGTGTTCCATAACCCCCAC
AGGACAACAGAGGAAATTTCATTCAGATGTAAGAATCTCTTGTTACAAAGCCAACAAGCA
GCCAGCTCCAAGAAAATTTTGAAATTCCTATTGAAAATTATTTCAACTTCTCTCTACATA
GAGTAAAAGGCGCTGGCGGTCTGAGAACTTGTCTTGTGGGTGCACATAAGTCCCACTACT
TGCAAATCGAAAAAACCCGTCATAGAACTTGAGTTTCGGGCTTATCTAGGTCACAACCGA
CGTTTGGACCGGCCGGCTGCCCAGTTTTCTCCGTCCGAGGTCACGCGAGGCGCACGTGTG
GGGTGATTTTTGCATGAAAGACCCTGCTCTGTGTGCTAATCAGTTGTGGACGTCCGTGCC
TGCCTTTGTTGACCTTTTTCCCGATGCTGGAGGCTAGTGGCGGCGGCGCTGCGGGTGCGT
CGAGATCGTCGGCCGCTAGTCTACCGGAGGTGATGGAGATGCTGCCGAAGTTGAGGACAA
AAGAATGCGGCCGGTCGATCTATGGTTAGTTTCTCGTTCTCCTCCCCCTCCCCTGAGTCC
CTCCCCTCCCGTATGGTTAGATGTCCTCCCCCTCACCTACCGATTTATGCTTAATGTACC
ATGTTTTTCGCAATGTAGGTTCCGATTCAGTAAAGTTCAATATAGAGATGCATCATGGTG
GGTTTTTCATTGGAAAAGGAATTAATTTTGCATATTTGGATGAAAAAGTAGCATGGTTTG
ATAACCTTGATAGGAACACGTTCTGCAATGATATGATTGACTATATGTTGGGTCAGTTGA
ATTATCCACCTGGTGATTTGGATATTGTTTTCTGGTGCCCACGTGGTAAAACAATTTCAG
AAATGGTGGCAATTGGTTTTGAAGTGGATTGTTTGAAGATGGCAGAAGCTTCTATTATTT
CAAAGATGCTTGTTTTGTTTGTCAAGCATGTGAAAATAACAGATATTAAAAAACAGGAGG
AGGAGGAAGATGACATTGCTTATAGGGTTGTGCGTGAATTACCTGCAGTAACACTTAGCC
CTATTAGCAAGGATAAAATGAGGCCTATGAAATCAGATGGCAAGAAAGCTAGTGTAGAGA
GTGTTGAAAATGAGGATACAGATAATTCTCACAAGTCATCGGATGCAGAAGAGGAATGGG
AATGTGATTCAGAGACTGATCCAACATGGTATGATAGTGATTATGCAGTGGATGAAGATG
ATGAGTTGTATGATAAAAAATGTAGATGATGCTGTGCAGGATGCATTGTTTCAGAAGGGG
AAGAAAGTAGGAACTGAGTACACACATGTTGCAGGCACAAATGATGTCACTGAAGAGGAA
CTGAAGCTACCAGAAGAAGATGATTTTGAGAAGATGCAGAAGAGTGACTCTGATGATGAG
GAGTACAAGAAGAAGAAAAAGAAAGAGAAACCCATATACAGGTTCAAAACATTTAACCCA
CTAGTGGAGATGGAAAATCCTCAATTCAAACTAGGTATGGTTTTTGATTCAGTGGAGTTG
TTGAGAAAGGCAGTAGCATATTATGCAGTCAAGAACAGAGTGCAGATCAAGAAAAACAAG
AAATAACAAACAGAGGTTTGAGGCAGTATGTATGGATGGTTGCCCTTGGAAACTTGTAGC
TGTGGTAGATAACATGACACAATCTTTCCTTGTAAAAACATTTGTTGGAGAGCATAATTG
TGAGAAAGTATGGGATGTGAAAGAACTAACAGCACCTTTTCTGGCCTCAAAATATGTTGA
GATGTTCAGGGACAATGACAAGATGTCTTTGTCTACATTTGCAAGGAAAGTGAGGAATAA
ATACAACATGGATGTAAGCAGGCATAAACTTGGGAGAGCTAGGAAAGCAACATTGGCTGT
GGTCCATGGGGATGAGGTGAAGCAATACACACTTCTTTGGAACTATGCACGGGAATTGAG
AACAAGCAACCCAGGGTCTTCTTTCTATCTAAACCTAGAAAATGGATTGTTTAGCACTTG
TTACTTCAGTCTTGTAGCATGCAAGATAGGGTGGTTAAAGGGGTGCATGCCCATTATATG
TCTTGATGGTACTTTTATAAAGACAAAATATGGTGGCCAGCTACTTACTGCAGTACTTTT
ATAAAGTTTGCAAGTAGTGGGACTTATGTGCACCCGCCACGCAAGTTCTCAGACCGCTAG
CGCCTTTTACTCCTCCACATACGTCTAGCTATTACACAATCAAAAAACATGTGATGTACG
TATTCAATATCGGTACAATGCACACATTTTCAAGTGGAATGGGAATGCCTCTCTTTCTCA
AGTTGTCACAAGTCATTATCTTATTTTGAGAGAATAACCATAAGAAGCCCCGTATTCTTG
GGGGAATCTTCAATTCCCAGACTGCAAGGAGTAAACAGGTTAAACACCCCTAAAATTAAC
AATAACATATATAGATTTTGAAGAATAGATACCATTTGATTCATATTGCCAGATCAGGCT
ATCTTCCCGCTCAGAAAATATAATAGATTTGTCAATGTTCTCTAATTCAAACCACCGCAT
CATAAGATCTTCGTCAAAGTTCCTTCTAAATTAAACTTTGAGATTTAGGCCACCCCAAGT
TTTTGCTACAGTTTCGTTTTTCTCATTCACTATGCAATATAAATCCCTAATCTAGGTAGC
TAACGAAGAATCGTCAAACCAAATATCTGCCCAGAGTAAAATAGATTTACCATCTCCCAC
TCACCATTTATACCCTAACTTGACAGCCTTCATGGCCCACATCATCCTTTAATTTCCAAA
TCTGGGATAGATGTGGATCATGACAACAGAGCACTTTTGGCCTTCTAGTGTTATACTTAG
CATCATTGCACCTTCACGAACAATTTCCACATCGTTGCAGCTCCATGAACAATTCTTCAA
CGAGTTTGAAGCACCTTGAATGCCTTCTTCACATCATTCCTAGCTGCATTTTCATTGTTG
CAAAATGACTTGTTTGTTGCCTTGTGGTTGGGATATGGTCTTCACAAACGCCGCCCACTG
AGGATAGATGCCATCGGCAAGATAGTATCCCATGTCATAGTCACGACTGTTGAAAGTGTA
GTTGCACGGCGGTGATTCTCCATTACAAAGCCTCCTCAACATGAGAGATCCTTGAAGCCC
GTTGATGTCGTTGTGACAACCCACATTTCAAAAAAAGCATGTCAAATTCACAAGTCATGT
GATGCCACTCCTTCCGGTAAGATGATGGCCTTTTTGGTGTGACCTTGATATATTCTCACA
AACCTTCTGGGCATTTCTTTCATTTTCGGAGACCTTATCCCGATTGATCATTATTCTTTC
TTTGATTGAACGCTTGAAGTTCACAATATGCTCCACCTATCGGTCATTTCCTCTTGCATG
CTCATGAGCATGATCGTGTCCACTTCATGTGAATTCGGCGAATCAAAGAATGGATCTTCA
ATCATTTAATCAAGCTCCGTCGGTCCATACGCCTCGTCCGACGAAGCCTCAGAATCCATC
ATTTTCCCTTCAAACAAATCACAAAACAGAGTCGGACAATGTGTCAAACACATAGAGCGC
AAGGGGCAGCACAAAAGTTGTGGGACGTACCGTGGTGGCGTCCGGGCCGATGACGACATT
CGCAGTGGCGAGCATGGGAGAGAGGATTGTTGTGCCGTTCTTGGCAGCGCCGAGGCTCGA
AAAGTCTATGGAGCAAGGGTGATGGCGGAGCTGCGAGGCGCTCGATGCGGAGAAGGAAAA
AAGAAAGGAGAGAGAAAATGAATTCAATAGGTCGGACAATGGATTAGGTGCAATTTGTGG
TGGGGTACGTCTGTCGGGTCCGACATGACAAACACGTCCGGACATCCCATATATGTCTTA
TATTTGGACTGGATATAAAGGATGCGGTCAGCTAGGACGTTTGAGGCTCACTTGAGACTG
TTGAGTAAATAGGCAATTTTCCGAGTATGTTAATCCACGATATAATAACTAGCATGGCAT
TGACTAGACTAATGATGTACTAATCTTGAACTAACCTAGCACATGCTACGCATATAGTTG
ATACATCTATGCATGCAAGTAGTACTGCAAGGATAAATACGAACATGAGGATAAACGAGT
AATACCCTCCAATAGGCCAGTTGGCCGTAGCAGCGGCGTTGGCGTTGGACGCGGCCGTAG
CAGCAGGAGCATCCTCCACCCTCTTCTTCTCAGCTTCAAGGGCGAGACGATCGGGTTCGG
ATGGTGAAGATATGGCGATGACGAGGGCGACGCGGACGTAGACGA