morexGenes - Barley RNA-seq Database

Contig contig_43474
Source Contig contig_43474
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_43474 (7463 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_43474

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_59320	1	747 bp	MLOC_59320.1	Available	Available	LOC_Os10g32920.1, FRAME:-3, EVALUE:3e-96, 13110.m02891 protein ribosomal protein, putative, expressed
CDS Structure of MLOC_59320

Contig Sequence (7463 bp)

>contig_43474 7463 assembly3_WGSMorex_rbca.fasta
GGGGTATTATCTCTATGGAGAGCCCCAAACCTGGGTACATCGTGCGTTCCTCGCTTGTAC
CAACCCCGTTCCGAGAGCCCGTCGGTGTCCTTTCGGTCTCCACCTCATCTTTTTAGCCTA
CACATGGCTTATGTCGTGAGTAAACACCGACATTAACCGACTCCTAACGCACGCGAGAGG
GAATAGAGCGCTACAATGCCTTGCACCTATGGATTTGGCGACCGTGTCTGTTCTTTGAAG
ATGATGTGATTATCTTTTACCACCCTAATAGGGCGGAGCTCCTTGCGGTTCGTTACTTGC
TTGCCACGCTTCCATACTACTCCCTGCGTTCCTAAATATAAGTCTTTTTAGAGATTTCAT
TAAGTGACTACATACGAAGTAAAATGAATGAATGTACATTCTAAAATATGTCTATATACA
TCTGTACGTAGACTTGTAGTGAAACCTCTTCAAAGACTTATATTTAGGAACGGAGGGAGT
ACACGTGAGCTTAACCGAATGCTTAGGGCTTCTTTTAGGGCGACCAAATGTGTGGTTACC
CCTATTTGTTGTTTGAAGGAGGTGGGCATTGGGGCGGCATTGGTGGTGGGCGCCTGTTAG
TCCCATTCCACCTTAGGATTCGACTCGACTAAGGGCATGACCAACGGGCCACGCTGGACG
GGTGCTCCAGGTGCCACATCATCTTGTCAGACGCCACCTCCGTCGAACGTGTTGCCTGAA
GAGGGAAACGGACTCCTGCAGAAGAACTCGGCTCCTCCCTGACAAAAGCTACGAGGCAGT
AACTCGGGCGATGCAGTGTGAGCTTCTTAGCTCTGCTGGATTCAGGACCACAAGTTGCTG
GTTGGAGCTTGCATGTGTGAAACGAAAAAGTGCCGTGTGAGCTTCGGATGGTGTAAGATA
ATGACATCAAAAAAGTAGCCTCCGTTGGATGATTATGGAACACACCATAGCTTCGTTTAA
ATTAAATTTATCTACGTGGAAGAGGTGAGACCATATTTCATGCCCTAAGAAAGCTTTCGG
TGGGGCAATAGAATTCCCACTTGGAAGTCGCTTAAGGCATGTAGAATGGTGGCATATGAA
TACAGATGCCCCATAATAAAAAGGTAACTTGAGGCATCTATATTAACTTTTTCTCTCCAA
TGCAAGCTATTATCAAGGTGCCTCGTCAAATAATAAAAAATAAAGACTCTAATACACATG
CATCTCTACTTTTCACTAACTTTTTCAGCTTTTTACACTGGACCACACCTTTTCTCTTCA
AGCACCCATCTGAACATTTTTTTCTTACATCTGATCCTACATGGCATACGGGGCATCACC
CTGAGGCATACCTGGCCAAACGGGCTGGCCCGGCACGACACGGCCCGTCAGAATCGTGCC
TGGCACGGCACGGCTGAACCCGATCACTAAACGGGCCGGGACGTGCTGGCCCGCGTGCCA
GGCTATCAGGCCCAAGCACAGCACGCTGCCTAATCGGGCCGGCCCACAGAACGCTCCCCC
TGTCTTTCTCCCGCGTCCCAACCTTTCTCCCTCGCCTTTCTCCGTTTCTCCCGCACCCAT
CTCTCTACATCTGCCCCGCTGACCGCCTCGCGCTCTATGCCCCGTTGGCCCCGCTCCAAC
CGCAGGGCCTGTCGGTTGGTCGGCCTGTCCCCCAACCCCCATCGCGGCAAGACGTGCCCC
CCGCCAGCCCGCCTCGCTCCCCCACATCAGAATGCTAGCTCTAATCGTGTCGTGCCGACA
CGCGGGCTCGGGGTGGCAGCCCAGGCACGACCCATGACGTGCTCGTGTCTAGCCCGAGCA
CGATTAACCCATGTCGAGCCGAGCCCATCTCATGCCTGCGGACAGTCAAGCCGGCCCATT
TGGCCATATCTACCCTAAGGGTATGCATTGTACATGCCCTTAATTGATAAGTCATTCCTC
GTCGGCACACCTCTACACCAGCTTATGGTTTTGTAGTCAAAAAGGACATCGAGCAGTTAG
GGTTCATTGGATTTGGAGGATGTGCACCAACCATCTCGTCCTTCGCAAAGCATGTTCGCC
GCCTCTACGTTCGCTCCGTCATTCATTGAGGCTTCTAAGGGTGAAAAGCCCAGATAAATG
AGGGAGACAGCTTATGGGGAAAAGTAAGCAGGATAATGCTTATATTTTAAGCCGCCAAAA
GAACGGGCCCTTCTCATAAGCCATCATATCACAACCTTTGGAGTTTGGAGGCATACGTCA
TGCAAAATAAAGTTATATCAAAGAAGCTGATAAGTGATAAGGAGATCTTTTAACCCAGAG
AATGGAAATGTTTAGGAGGTTGAGCCTCATTCGGATAAATATCTGGCAATCAAATAATTC
AGGTACAAAACTGAAACTAAGGAAACATATCATTATCCCAAACAAGCTCCTCAGACAATG
GCATTTGCGGCGCTAGCGATCCTAGGCCAGAGGTCAGCACACTCCTTACCAATGGGTCCT
GTGATAGCAGATCCTGCATAAGGGAGCAAGTGAAAAGTTAAAACCTGAGCAGCACCATTT
TTGCGTCTCAAGGTCGTAAGCAATGGTGGTCACAACAATAAAGTACATCAGTCTTACCTT
TCATCTCACCCTTAGGGTTCACAATCACCCCAGCATTATCTGCAAACAATGCATCATCCC
GGTTAAGTTGACAGGTTCTGTAATTTGAGAAAAAATATGCAGGAAATGGTACAGGAATAC
ACCGAATAATATCACCCAAAAGAATAAACTATCTTCCAACCTAATAGAGTTTTGTGCATA
AACAAATTACATAATTAGAGTATGTACAAACAACAAATTCTTATAAAGAAAACATAGATA
ACCAGCATACTGTTAAGTGTATAAAAGACAACAGAAGGAATCATGGTGCATCCCGGAGTT
TCATTGCAACAGTGTGCTACATAAAGCGCTAGAACATGAGACCATGTCCAGATGGAGGAA
TTCCGATGATGATTAATATATTCTTCATCAAAGAAAACCTCCCAACACCTGTAAGGCTGT
TTTGTGGAGTTTACAAAGGAATATGCAAACATTAAAAGTTCGCGCCAGATATTGTTGAAG
GGCCTCATTGTCCATCGTCACCTAAGTAAGTTGATGTTATGCAGATCATAACAACAAATG
TGGTCCGGACAAGATCTGATTTACCAATGCAGCAATGAAAGCTACATGGCTCGATCAAAT
AATAGCAGACTTCGACATGGTGGAATTTCGATAACAGCATACTTCAAAAACGTCAGGTAC
TTTAATTAAACTTAGGTCTAGTAAGTCTATACAAAACAGTGACAACGTCATAAAAGAAAT
GAGCAGTATGAATGTGTGTTTTAAGACAATATTCTTGCAGCATTCAAAAGCATGCATCGT
CTGCTAAATATATTCAAGAGACTCAATACCCTATCATCGTTTCAGATGTTTCCGTGGATC
TAGGCGAGTCATGCGAAATCACAAGCATCCAGATCTTCTAGTAAGAGCTAATCCAGGATC
TCATCAAACAACACAACGGTGCATCGTTACCTTCGAAGTACATGAAGACACCGTCCTTTC
GGCGCCATGGCTTGCGCTGGCGCACGATGACAGCCGGCATGACCTTCTTCCTGAGGTCGG
GCTTCCCCTTCTTGACGGTGGCCATGACCATGTCGCCGACGCAGGCCGACGGCAGGCGGT
TTAGCCTTCCCTTGATGCCCTTCACGGAGATGATGTACAGGTTCTTGGCGCCCGTGTTGT
CGGCGCAGTTCACCGTCGCTGCCACCGGCAGACCCAGCGACATCCGGAACTTGTTCCCCG
CCGATCCTCCCCTCCCTGCACGATTTCCCACCAAGTGCGTGTTAGGCTAGATCAACGAAA
TACACGAAAGGAGGGAGGAGCCTCTGAGCATTGCTGAGAGAGGCGGCAGCACGTACCGCG
CTTCGACATGGCGGCGTCCCCTGCGGCGCTTGCTCCGAGCGGCGGCGCGAAGAGTGAGTG
TATCGATTAGGGTTTTGCGGCTTGGGTCTCTTATATTGAGTGAGCTAGGTGGGCCTCGTT
CGCGTTAGGGCCACTCGCTCGCTAGTTGCTCTTCTGGGCTGAGTTTTCTCGTAAAGAAAT
AATGGGCTGGCACTCGGAATAACAGACCGCTCCAACCTGCGCTTCTCTTAAAAAAAAAAA
ACTCCATGACGTGACTACTTAGAACGGGTCACCCCCTAGTGCCGCCGATGTTGCCATTGA
CTTCCCTTCCACCTACGTGAGAAAAATCGGACCTCCTTCTCTCTCCCACCTATGTGAGAA
AAATCAAACCTCCTTCTCTCTTCCCGTACGCTAAAGAAAAAAAAGAAAAAGAAAGCAAAC
CACTTACATAAGTCTTTCCCTCTCCCCGCACGCCAAACTTAATATGCATCAAGTGATAAA
ATTAGTGGATGATATAATTCACTAAGAAGCGAGCGAGTGAGCGAGCGGCCCCCTTCTGTC
CCGCGCCCGTCGTGCATCACTCCGACACACGCGTCCACCTCCTCCCGTCGCCCGGCACTC
CGGCGACGTCGGTCACCCATCCATGGCTTCGAGCCCCACCTCGGTGTCTGCATCGCCTTG
CAGGAACGGAGATCGACTGGTGGTCTCCGGTCTCGACATCTCCTCTCGATGCGACTCGCC
CCGACTGCAATGATGCCAACGAAGTCTCGTCAAGGTCGCGTCGTGGGGAGGGTGCCGCCG
GTGCGCCCCTGGACGGGGTCGGCGGCAGCCACGAGCCCTGGGTGCCCCCTTCCAAGAGAT
CCCTCTCAAGGTGCACACACGAGTGGGAGTTGCAGGTGCTGCAGTCGCATCCGCGCCCAC
CTTCCCCATCACCGCCCCCGCGCGTGATGTCGCCGGACATGGAGGGCCTCTGCTTCGCTG
CCTCCGGGAGGGGCACTTCCGGCGTGACTGCACCAACCCCATCGTCTGCATCAGGTGTGG
TCTGGAGGGTCATGGCTCCAAGGGCTGCAAGCGCCCATGCAGCCCTTCCTCGAAGGTGGA
GCTCACGCGGTTGGCGGTGGCCATGGTGGCCGAACGCGTCTCGCGCAGGCGGACTCCAGC
TTCTACCGCGGCTCCGCCCTAAGGCTACTCCCAATGCTCCACCTTGTACAGGTGCTAAGG
CTGCCACATAGACAAAAAATCTGATGTGTCATGCTAATTAATAGGAGAGAGATGAGTGTG
GTGACCCGAGGAAGAAACAATGCTAAGCGCGTGAACCTAGGTAAAACAATTAAATGAAGG
AATGCACCAATGCATGCACAACTTTAGTTACAAAATCATTAAATAAGGAGGCTTAGCTAC
AATAATCTAAGCTACTATGCATTGAGGACTTTAGTTGCTAAACTATTTAATATGCTTAGT
ACCTCATCTTAGCACCAATGTATTGAAAGTAGCCTAACCTCCGCCAGTGGACCCTATGCT
AGTGAATCCCTGGGACCGCCTTCCTGCGCAGACGGACTCCAGATGGGTGCTGCCCCCCCC
CACCCCACCCATGATGATGTGATGGTGCCTCTAGAGCTTTGTGTTGTGAGGCGCACCCAA
TCGATGGAAGATCTGGAAAGGCGTCTCCGTCTCGCCATGGTAGACTATGCGGGCGGGGCA
AGACGCAACCTTTTGCCAGAGTTCATCACTGAAGCGCTCACCGCTAGGACCGGAGTTGAT
CCCGTTAGGGTGCCGATTCACAGATTTAGACCTGAAGACCTTCTCATCGTCTTTGAGAGG
GGCTGAAGACAGGAACAAGATGAGTATTGTGCCTGCCATTGACCACCCGGGAGTGAACTT
GTTCTTCCGGCAATGGAATCGTCACGCCCAAGCGGTGCACGTTGCATTCCAATTCAAGGT
GAAGCTGATCCTAGAGGGTAAACAGACACATGCTTGGGGTTGGGAGGTGGTGGAAAGTTT
GCTTGGCTCTTCTTACATGGTGGACTCGCTGGAGCATGAGAGGTGCTCTAGAGCAGACCT
CATGGTGTTCCGGCTCTCGGCATGGACTGTGCAGCCGGACGACATCCCCTCGCTCCGATG
GCTCGCGATTTCGGAGCCGGGACTGGCGCCGCCGTTGACGGAGCCAACGCTCCTTCGGTC
AAAGGTCCTGATTCACCTGGACGAGATCCTCGATTACAAAGCAGTGGAGGAGCCATGGTT
CTTGGTCACATCTTCCGGCATCGACCACAGTGGGATCCCGGGGTCCGACAATGATGTTGG
CTTTGGCGGCAGTGGAGTCAGATCGGAGCGCACGAACTAGGCATTCGGCATTCGCGATGC
CACAAGGCTCGTTGGTACGGGCGCTAGTGGCACCGACGTTGGTGTCGGAGCATCTTCCGC
CGCGGGGTTTGCCACCCAGGACTGGAGGCTGCCTGAGATGATGCAACCGCCAGCTCCGGT
CCCAGCTGGCAGGGTCACCTCTGTCCATGACAGGATCACGATCAGGCTGTCTGCTTTTGG
CCGGCTTTCGCTACCAAAGCAAGGGACAGCTGGCGGATCTGCCATGACCGCTGAAAGTGC
AATCATGCCCTTAATCATACTTTGATGTTGCTGACAACAGAAACTAATCCTCTTAATCGA
GTGTATCTCAGGTTTTGTTCCCATAAGAGTCTTGTGCAGATCATGACTAGTGTGTTAAGG
AGGCTCAAGAACGAAGAAAGAAGATGAAGTGGTCTATCTTTTTACTTGTCATTTTTGAGT
GTAGGGACCCAACACTATTAAGAGGGGATCACTGAGTCTCGCGAGAAACTTGCTCAAAAA
TTATCAGGAACGCCATATCTCTATCTTCATATTGATCTACCTCTGTCCGGTCATCCGGTG
GCTCTCGGACGTCCAGACCCCAGATGGTCGATGCCCTGCGGAAATCCGGTGCCAGCGAAC
AGACATGAAGTCTCGGACTTCCGGCGTCCTCCGGTCATCCGAGGACCTGGCGTCCGGGCA
ACTACGGATTTCCGGTGCCACCTAACAGACCCAAAACGTTGGACTTCCGACCAATCCGGG
CGACCGTGCCCCGGACGGTCGACGCCCTTCGGACGTCTGTGCACTGTTCATTGCACTTGA
TGGTAATCTAATATCGTCTATGTCTTCGGACATCCGACGAACTCCGGACGTCCGGATGCT
GATCACCTGTACATCAAGGTAACCTGATACTTCCAACATCTTCGGACGACCGATCAGTGT
CGGACATCCGCCCCTTCGTGGCTATCTGGACGACCGTGATTTGCCGGACGTGCGACAACT
TCTGGGCATAAGTGGCTCCAACGGTCACTTTTGCCCACCACTATATATAGCCCTCTCCCA
CCTCGTGCGGGAGTTGTCCAACACAGCTCAAACACTCTAAGAATATCCTTATTTCTCACA
CCCACTTGCTTACACCAAATCCTAGATCCCAAGAGCATTTATGAGCCCCTTGAGCGTTGT
TCCAATCAAAAGATAGATCGTCTCCTTCTTCTTCTCTCAACCCTAGCGATTTGTGATTTG
AGCAAGTTTTGAGCAGTCCCCGT