Map Locations of contig_43466 (4825 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_43466

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_59314 1 1542 bp AK375883 Not available Available None
MLOC_59315 1 1609 bp AK360019 Available Available None





CDS Structure of MLOC_59314






CDS Structure of MLOC_59315






Contig Sequence (4825 bp)

>contig_43466 4825 assembly3_WGSMorex_rbca.fasta
CCTCCTGGGACGTCCATTGATTCACTTGTAACACCGATGTACTGGCCTCTTAGGAGGATG
TTCTCCCCCCCCCCTTTCAATGCAATGAAACGCAAAGGTTTTTTGCGTTTTCTCGAAGAA
AAAAAAATGTTAACTTCAATGGGCTTTGTGCTAATGCTATGCTATTGGCAAGCTCAAAAA
AGTATTATCTTCAATGGGCTTTGTGCTAATGCTAACTACTCTGAACCGCTGAATTAAAAA
GCCTCCAAAACTTCGTCCAACTATTATCTTCTGGCATTTCAGAATCTTTGATGGTGTAGC
AGTTGTTTAGTTTCTATTCCCTCCGTCCTATAATTTTAGAGTGTTTTTTATATTAGTGTA
GTGTCAAAAACACTCTTATATTATGGGACGGAGGGAGTAATTCCCATCTAGAATTGTTTT
TACCTGAATTCGTGATATGTTCCTTATTGCTTTCTATTCAGCTAAACTAATTTGAATTGA
TATTAAACACAATCTGGTTGTGATTCTGAGATGAAAATTTTGTCACCAAGTTGTTGTTTT
CGTAAATGATGAGTTATGCATATACAGTACATGTTTGGAGCATCAAGTGGTGATGTTAAA
TAAGTTAATACAGTCTCACATGAATTTAACAGATATGACCTCGTGGATTTGACTCGTCAG
GCTCTGGCCAAATATGCCAACCAAATCTTCCTAAAGATAATCCAAGGCTACAAATCAAAC
AACGTAAACCAAGTGACCACCCTGTGTGAGCGCTTCCTAAACCTTGTTAAGGATCTTGAC
ATGCTGCTGGCCTCTCATGAGGGATTTCTGCTTGGGCCTTGGTTGGAAAGTGCGAAGGGC
CTTGCACGAAGCCAAGAACAAGAGATACAGGTATTACCTTTTTATCTTTTGACATTCCTT
TTAAGTACTGGATGGTTTCGCCCTTACCTGCTTGATGGTAACCAAGGCTAAACGAGTCAA
AACTGCTAGGTAGACCAATTCTGTTGTAGATCATTGTGGGTACTAGGCCATTAGGTATTA
AGCTTTGATCTTGTCATGCAATGCTATTGTATATACAAATCTTATTATTCCAAAAGCTCA
TGTATTTTTTGTTCATTGCTGACATTCAACTGCTTTCAAACGGGTGCAGTATGAATGGAA
TGCTCGAACCCAGATTACGATGTGGTTCGACAACACCGAAACAAAAGCAAGCTTGCTACG
CGACTACGGTAAGACACATCACGTGACACCCTTCCGCCCACTTCTCCGTGTTCCTTTTTA
ACAAGTTCCGACGATGCAGCAAACAAGTACTGGAGCGGCCTGCTGCGGGACTACTACGGG
CCAAGGGCCGCCATCTACTTCAAGCACCTGATATCAAGCTTGAAGAAGAAGGAACCTTTT
GCGCTGGAAGAGTGGAGGAGGGAGTGGATCAGCCTCACCAACAACTGGCAGAGCGACAGG
AAGGTCTTTGCGACAACGGCCACCGGAGACGCTCTAAACATCTCCCGGGCCCTTTTCACC
AAGTACCTGCGCAACGCCGATTCACTTGGGCTAGATGGTATGGACTCATTTGTAAAGCCT
ATAAGCTTGTAAATTTCAAGCTCCTGGGTATGTTTCTGTAAGACATTTATAGGAGATCAG
ATGGGATGTTTTAGCTAGAGTGGCCGAGGTAGAGTTCATCAAACGGTTGGGTGTTTGGGT
CAGTGATTTTTCGCTCCATGATCTGATTGCACGATGAAACATACCGTTAGTTTTGTGTCC
GGTTTGACTGGTATGTAATCATAAAGCTGGGAACCAAAATACCATCCCTGTTGTTACTTC
AGCTGTGTTACTACTACAGATTGACTCGTACCCATTTCCGAAAGAAATTGAGGTGGCCTA
AACTCGGCTCTGTCAGATATTACCTCTGAATTACTTGTTTTGGATTTGTTTAGATACGGC
TGAATCTAGACATCCATCTCAAAATACTTGTCTTAGAAAAAATATTAGATATGAATGTAT
CTAACATTAAAACGTCACAAAATATTTGTCTTCGATTTTTATGGATCTGGCTGAATCTAG
ACATCCATCTCAAAATACTTGTCTTAGAAAAAAAATTAGATATGAATGTATCTAACATTA
AAACGTCACAAAATATTTGTCTTCGATTTTTATAGATAGATCCGTCTAACATTACAACGT
GTCAAGTAATTTATATTTATAGATGTGGATGTATCTAACATTAAAATATGTCAGATTCAT
CTATATCTAGACAAATCCAAGACAAATAATTCGGGACAAAGCATGGAAGTAAGCAACTCT
CCCCTTTGCCCTTGCAAACAGATTAGAACGGCACAGGCATAAGAAGCATTGTTCAGAAAG
TAAAGCAGAGAAAGCATCGACAGAGACCTCATTATTAATTAATAGCATTATGCTGAAACA
TAAGATGGATTAACCAAAACACCAAACCAAACTAGAGCACCACCACAAGAATCCCCACGA
ACAAACTTATTCCACCCACGACGACCATCCGACACCTAAACCCCTGATCAACCAACCAGC
CGCTAGCTACATCAAAATTTCAAATCAAAACATACATGTCACGCCTAGAGCTTGAGGAAG
ACGAACTCCTCGATCGCGGGGATCTCACCAATCTTGGTCAGCGTGGTCTTGCTGGGCTCC
TCATCAACACCGATCGCCATGATAGCCGTCTTGCGGGGAGCGATCCTACCAACGCTCATG
AAGCTGACGTTGACATTCTCCTCGCCCAGAACGCTTCCGACCGACCCGATCATGCCGGGC
TGGTCGACCTGCCTGCACAGGATCAGGCTGCCCTCCATGCTCACATCCACCTCGAATGCA
CCGACCTTGGTAAGGTGGGGGATGCCATCCTTCACCCTCCCCTCTACCGTGACAAATCCG
GAGTCACATATCGCACTGGGGAATTTGGACTCCACATTGGCTATCTGGACCTGGATATAC
TCGAGCGGTGTCTCGGGTGAGCCATCCATCACGATTTTCTCCTCGCTGACACGGATGCCC
CTCTGCTTTGCAGTGAAGTCAGCATTGACCAGATTGACGAAGACGTCAGAGATTGGTTCT
ATCACACCCTTGGTGATCATCGCACGGAGAAGTCTCGTGTCGAGATCATCAGGAGCCCTT
GCGGATGCATAGGTCACCTTCACAGACTTGATACCGCCACCGCCAGCAACTAGCTGGACA
GCAAGGCGCCCAAGCTTTTCAGCGAGAACAACATAAGGTGCAAGCTCTGACAACACCTGT
ATGAAACACAAGGATGTAAAGACAGAGTCCAGATGCACAAAAGAATAGGTTGGGAGTCAA
CAAAGAACAAGAGATTGGTACCTCAGCAGGAACCATTGGTGCATTGACCGCAGAAGCTGC
AAGCTCCCCTTTCAGAGCTCCAGTGACAGCTTCAGCTATTTCGATAGCCACTCCTTCCTA
TGGAATTTGAGGTGTTCAGCACTTTGGTAGCTTAGATAATACTAGAACCTAAATAAAAGT
CATCACAATGTCTCTGCGCTAATTCAACATACCTGTGCTTCCACTGTGCTGGCACCAAGA
TGCGGAGTCACAGTAACATTCTCATGTAGCACTAACTTGCTGTCTGCTGCTGGAGGCTCT
TTGGTGAACACATCAAGAGCAGCCTGGCATATATACAGATATAAATATATAAGCGAGACT
TGACTAAAACAACTGCAGAGAATTTAGCCAGTCATGAAGTACCAAAGGGAAGAGCACTGA
ACAGACCTGTGCAACAATTCCCGCATCAAGAGCCCTGACTAGAGCATCTTCATCAATCAC
ACCACCACGTGCAACATTTATAATCCGAACACCCTTCTTCATCTTGGCAAATGCTTCATC
GTTGAGCATCTTGTTTGTTGAAGGGGTGAGGGGCATATGCAACGAGATGAAGTCGGCAGT
GGTCATAGCCTCTTCCATGCTCACTAGGTCAACTCCAATTGCACGAGCACGATCAGCAGA
AGCATATGGATCGTGTGCAATCACGTGCATTCCTAGACCTTTGGCGCGACGTGCGACCTC
TGACCCAACCTTTCCAAATCCAAGGATGGCGAGAGTTTTGCCAACAAGAGACACACCGAC
ATACTTGGTGCGCGCCCATTTACCTACACAGGAGTCAAGTCAGCAATCGAGGTAGAAAAA
ATACTGCAGCTAGATAAACATCAACGAACAATTTCATAAGAGATGCATCAAATTGTCCTG
AAGCATTAGTAAAAGTGGTGACAAGATCACTATGACTGCTAGAACACTGTGCGTAGCATT
GCTGATTCTATTTGTAGATAATTGGCCAGATCCTGTTTACAAGAGAGGCTGTAAGCATGA
TCTCCATAATACTGCTCAATAGTTCCTGATTTGCACGCACCAAGCCTGAGATGTCATTTC
AGATCAAGCACCGAATCGAAGGGATAAACAATGATGATTGTTTTCTGCTGAAAGTATCCT
CCCAAGATTCGGCATCTCAGAAAATAATTAACATCATATAAGTAAAAATATACTCCATAT
CTATTAATAAACTAGACATGAGCGCACGTCTGCACGATACAGAGATGGTAGGTGCTTTCC
CACAACGAGTGAGAAGAAGTCTTGCGGAATTCAGATCGAAGGGTAAAAAAAGCTCACCAG
CCTTGAGCGATGCGTCGGCCTGGGCGACGTTCCGGGCCATGGCGCACATGAGCGCGATGC
CGTGCTCGGCGGCGGCGACGGTGTTGGCGGTGGGAGCGTTGACGACGAGGCAGCCATGCT
CGGTGGCGGCGGCGAGATCGACGTTGTCGATCCCGACGCCCGCGCGGCCGACGACGCGGA
GCCGGCCGCCGGAGGCCTCGAAGAC