morexGenes - Barley RNA-seq Database

Contig contig_43410
Source Contig contig_43410
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_43410 (8331 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_43410

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_59253	1	206 bp	MLOC_59253.1	Available	Available	None
MLOC_59252	1	2555 bp	MLOC_59252.1	Available	Available	LOC_Os06g37080.1, FRAME:-3, EVALUE:0.0, 13106.m03838 protein L-ascorbate oxidase precursor, putative, expressed
CDS Structure of MLOC_59253

CDS Structure of MLOC_59252

Contig Sequence (8331 bp)

>contig_43410 8331 assembly3_WGSMorex_rbca.fasta
GGGGGGATTTGGGCCGGCCGCATCGGGTCTGGGGCGGGACGGGTTGGGGTTAGCAGGAGA
TGGTGGACCGTTTCAGCGAGCCGCTTCACCTAATGCGGTTAGTCCGACGGCGTTTAGTGG
GATAATTATGCGGGGCGGCGTTGCGGTTTAGCGGGTTGTCCCGCGCCGCTTGCTTCCCTA
CCAACAAGACAAAAAAGAAAAAGAAACAGGTTAGCCCAGCTCCGCTGCACAACTCGCCGG
CGTTGTTTATAGCCATCATAAACGAATCCTCAAACACTTTGATCCAACGGTTGAAAAAAT
GAATATAAGATCAAAAAAAAAATCTCAGCTGAATGAGTTTTAGAAAAACTGTATTTTTAA
TAGACGAGCACGGTAACGCGCATCACTAATGATCTAGCGAACCTGTTTATAGACCGCATA
GGTGGAGCTTGAATTCTAAGATTGAAACTTGGAGTGCATATTCAAGAAAAAACAAAGTAA
AAGAAAATCCGTACCACATTTTTAACAGACGAGCACGGTAACGCACGTCATTAATAATCT
AGTGAATTTGTTTGCAGATCGCATAGGCGGAGTTTGAATTCTAAGATTGAACCTTGAAGT
GCACATTAATGCCGAGCAAACCGTTGTTTGCGTTCCAATCCATGATTCCAACAAATCATA
AGCACTTAACAAATACAATCTCACTCCCTAATGATACATCAAAAAAGGGAAAATGGAGCC
CTTTAGAGAAGGGAAAAATGGAAGAACCCTAGCTAATCATGAGTAACCAAACGCTTCTTG
CACAAGATAGAGAGGCCCAAGCCAGGCTCTCATAAAGGGCTCAACGGCTGATTCACGATC
AGGGGTGATCGCCGTTCATGAGCGCGGTGGCCGTGGCGCCGCAGGAGACGGCCTCCTTGG
GCACCTTCCCGACGCGTTCGATGGCCTCGGCGAAGATGACCCCCATGCCCATGTGGAGGT
GCGGCTCGATGTGGCAGTGGAACGCCCACACCCCGGGGTTGTCCGCCACGAACCGCAGCG
CCGTCCACCCGTACGGGAAGATCACCGCCGTGTTCCGCAGCGGCGGGTTCACCAGGTTCA
GCCTCGCCGCGTCGGCGGCGTCGCCCCTGTACGCCCCCTCGCCGTACCCCAGCACCCAGA
AGTCGTGCCCGTGCAGGTGCCACGGGTGCACCTCGCTCACGTTGTGCTGCAGCGCGTTGG
CGTTCTGGAGCACCACGTCCACCGTGGTGTTGTGGCGGAGCACGTACACGTTGTCCCCCG
TCGTCGTGTTTGGGTTGTGCGGCGGCCGCGTCACGTCGTAGGCGCGCCCGAACGTGTCAG
CCGGCCGCGCGGCGGCCAGCGCCGTCTTGAGCCCCAGCTTCAGGGACCCCAGGTAGGGCG
TCGCCGGGAGCACCATGGACACGTTGTTGATGGACCACTTGATGTGCCCGTCCAGCTTGT
TCTGCGTGTTGAGCAGCTCGATGCGCCGGTCCGACGTCGCCGGCGGCGGCGGCGTGCCGG
CGCGGGCTTTGATCTGGGTCGTGAACGCCTTGCTGTGCGCGGTGTCGTTCCACGCCGGGG
TCACCGGCGGCGCGATGGCCGGCAGCTTGAACCCGCGGTTGGGCCGGTAGTTGAGCAGGG
CCAGCGCCGGCGCCGTCTTGGGCGCCCGGCCGCGCACGCCGATGCTCACCCAGTAGTTGG
ACGACGGGTCCTGGTCGGTGGTGAGCAGGACGGAGTAGCTGTCGCCGGAGTAGATGTCCA
TGTCGTCCACCACGAACGGCTCCACGTAGTTGCCGTCGGCCTCCACCACCGTCAGCTTGT
GATTCTGAGCACACAAGAAATCAACTTACCCGATTAAACAATGTCGCAAGCATCCGACAT
AGCTTCAGGATTCTGCACATCGCACAGTTTATACTGTTTTATTATTATCGGGGAATCAGT
CTGTGTCGGATTTGCTTACCCCGATCGCGAGGTTGAGGGAAGCCAGGGACGTGGTGCTGG
CGATCCTGAGCCTGTAGGTCTTGTTGGGCTCGACGGGGAGGATCACCGGCGCGCAATGCC
TGTTGCCGCCGGCGGTGCACTGCTTGGTGCCCGGCGTGTGCGCCGCCGCGAGCGAGCAGT
TGAACTGCCCCCTGCCGTTGATCAGCAACGACTGCGGCAGAACAAGGACACACAGTGCGT
GCCGTTAGCACAAACATTCAGGCAGAATCTCCAGTCATTTTCGACGATTAGACAGCTCCT
CACATTGATCAGCAATGACTGCAAGAAGAAAACAACATCTACCGTGGCAATGTGTCTGCC
TGAATTATTAGCAAGGTGACCAGAGATTCAGATCACAGTGCTGTGTCATTGCCCAATATA
TTAGTACTAGTGAACACTTCCACTTGCCTTTTGGTTGTGTTAAATCAAGAGAAGATGTCA
ATTTTCAAACACCACAGTAGATGCGCATTGTGTGTGAACCAGCAGTGACACATCACTGTT
CTTGTTGGACTGCCTTCCCCAACACATGCATGCACACATGTGCTTTGTGCACACTACAAG
AAAAAAGACGTACCACCACTGTGGATATGCACTCATGTTGGCTTGACCCATTCCCTGACC
ACCCAATGGCCAAGCAAAGCTCCCCACACAATAATGTAGGTACCACCTAGGGCCTGTAAC
TTTTTCAAAAAAAATAAAAATGCTGCATCACCTCTGCTCTGCATCATGGATCTCCACGGG
CAGGCAGATGTTTCCAAGATCAAGAGAGAAAAGGTCCTTGCATGGATGCTTTTTGGTGAC
ACATGACCACAAGTGTCCCCTCTGAAAATCATGTGGCCTTGTGACACCCCCCAATCTTTT
CTTCAGAAAATTTGTAATGTGTGTGTGTGTGTGCATCCATGCCTGTGCTGTGCATAGGAA
CATGATCTGTTCTGACACTTTAGGTATCAGCACACACATAATACTGGTCTTGAGTCTACA
AAAGTGTCCTATACATGGAGTGGGAGTGATTCTTTCTAGGAAGCCCAATAGGGTGGGTTC
CATTTCTTGTGCCTTTCCCATCAGCACAGTTGGCCCTGGATGCATGTAAACTTTCTGGTC
CTGACGAGAAAGCTGAGTGTGTGCATCATCAGTTTATCACCATCAGCTGGGATCTTTGAG
GCGATGCTTTGCTTAGTTTTAGGGTCTTTTTGTTCCAAATAATAACTTGCCACACTTTGA
ACATCTTAATTTAGGCTGGTTTGATCAAGTTAGATGTGTGTTTGTTCTTGCCACAACTAC
GGCAAGAATCCTTTTTTTTAGTAATAAATCTCACATGTCATTGATAAAAAAAATATGGCA
AGATTTTCAAGGCAAGTCAAAATGTGACTAAGAATTTAAGCACCTCAAGTAAGACGAGTG
TGACAAAATAATGTGGGAATATGTGGCAAAGATAGTCACAGTCCAAACAGGCCCTTAGTG
TTTTCATAACAAAGAAACTCTGGCAATGTTCTCTACTAACCTGCATATATGTATGTATCC
CGCACCAACAATTGCATTTTAAATTTTAAATTGTTCTTTCCGTGATCATCTAAGTCACCC
AAGTTCACCGGTTCTCTGAACTTTTCTGGTGCACTTGCATTTTAAATTTCTATAACAGGA
CAAAACAATTGCTCTTTCCGAGATCACCTAAATTAGATGCATGCGCCCCAAGTCCAATCT
CACAGTGCCATTTGTCGTTTTTGCGTTTTAAATTTTACTTGAAAGAGTGCATTTTGGACT
GTCCTGGTTGTAAATCCAACCAACCAAAATACCTTTTGTCTACCGTGAAAACTGCATCTT
GCTGAAACATCATATATACTACCAGAGACATAGCAAAACATATGTAGCAAGAAGATCAGT
GTGGTTTTGACGGTTACCTGGGGCTCGCCGATCCATCTCATGGGGCTGGAGGAGAGGCCA
ACCATCTGGTTGTAGATGCTCTCGTGGTACCAGTCGCTGAGGAGCAGGTTCAGCTCGCCG
TCATACTTGAACGGCTCTTCCTCCCCATCTGCCACATCCACGATCAGAGAGCCGTACAGC
CCTGCCGCCCTCTGCATGCCGTAGTGCCCATGGTAGAAATATGTCCCCGGCTGCAGCCAT
GAGCCAACCATGGGTCAGTCACAAGTCAAAACTGAAGAAAAAAGGATAACAAATGGTTTT
GCAACGGCTTTGAAACTATTTTTTAAATTAATTTCAGTTTCTTGGTACCGGCTATGATGA
TTTGGTAAGTGGAAGTACCTTGTCGACGACAAATCGGTAAGTGAAGGTTTCCTCGGGGTT
GATGGCGCATTGGGAGATCGCCGCCGTGCCATCCGCCCACGGTGTTCCAATCTGCCATGA
TTTTCGTTCACGCCATTGTTGGAGCGTTAGGGATGAAGACAAGACCAGTAGAAGAACAGC
ATCTCCTAGCTAGCTTAGCTCTGTATATGACCATGTAGCGAGGAAAGAGACAAAGCAGTG
AGAGTGTGCTCTTGGGGTTACCTGTCTGACGCCGTGCCAGTGGATGACCACCCCCTCGGT
GTGCAGCCCGTTCTTGAGCTCGACGACGATGGTGTCGCCGGCCTTGGCCCGGATGGTGGG
GCCGGGGAACTGGCCGTTGATGCCGATGAGCACCTTCTCCTCGCAGTCCGGCGACCAGAA
CATGTGGCTCACCTCCCACTTGAGGTGCCTGGCCTTGGCCGCCTCCGCGCAATGCAGCAG
GCCGCCACACGCCAAGAGGAGGGCGCACCATGCAAAGAACGCCACAGGCGCCCTCATGGC
AGCAATGGGGAGGAAGAAAGACTAGTAAGTGGAGGAAAGGTTCAGACAATTTCCTCAAGG
CAGAATGGATGGGAAGAGACTACTGAAGGCTGCTGTGCTGAAGCTGGTGATGGTGTGTGC
CAGTTTTATACTGGCAAAAAGGCCTTCTCAAAAGCAACAACGCATGATGCTGTTTGGTGA
TAGCAGTATTATATATTTTTATTGCCATTATTCTCCTTGTTTTTTATGAGATAAAAAATG
AACTACAGATTTCTTTTGAGCAAAAATAAAAATAAAAATAAAGGTGGATCTGCTCAGTGG
GGTTAGGTTGGGCTTGGGGACAGTGGCATGTTTGTGGAGCTCCTCGGAAATAGGCCGTTT
CCTAGAGGCTTGCAGTCCTGCCCAAGAGCTAGAAATGGCTCAAGTTTCTTAATTTTCCAT
TGCATCTTTCTGGCCAGCGAATAAAGAAGGTTCATACCAGCTTCATTTTGTGTTGCTTTT
GCCAGTTCATATTACTAGAAATCTGGTCGCCTATTTCCGTGTGTCTACACAAGTGGTCTT
ATGCAATGGCCAGACAAAAGCGCGTCCACTGCTACCTCACATCCTCTGATGGTTGTTCAC
ATGCCTACAGGCACATGTTTTGGTAGCTAGTGTGCATTTTCTTGCAAAGGATTTTCTCCT
CTTTCTCTTGCTTAAACTTGTGGGAAAGATGCAAAGTTCATACACATGCCTTTGGGTTTT
ACAAAAAGAATCTACATGATATGTCTGCGTAGCTTTTGAATTGTTAATGTGTACACCGAC
GATTATTTTGCCTTTATTCACTATCCATGTGTTTGACACCGACGATTATTTGCCTTTTTG
ACCTTCTCCCATTCGCACAGTACCAACCATCTTTCTGTCGAATTATTTATCTGGACACAA
TACCTGATAAAAGATGTCAACTTCTGGTATATTGTTTGTGTGCAATGCACGTCTTAATAT
TGGGCAACATATAAATTGCACGTTAATATTAGGCAGGATATAGTTACTTCATTAACACCG
AGGTTTATGTTAGGCCTGTGATTAATTAGGAAAGGATGGTAAGCATATTTTAGTGCTAAA
CATGTTTAATGCTAAATACGGGAGGGACGTAGAGCGTTGGGTAGATGCAGTTGGACGGGT
AATATTTGTTGGATCTTCACAACTCACTTTTAAAAATATTAATACAGATATAGATATAGA
TACATATATTATTAATATAGATATAGATATAGATACATATATTATTAATATAGATACAAA
TGTAAATATAGGTATAAATACAGATATAGAAGTATAGATGACATCCTTTTCCACATTAAC
TATATGGATTTCATTTCATAGGAAAAAAGTACAGTTAAATAGGTGGTACTAAAAAAATTA
ATGCAAGTGCAAATTCATGCAATGATCAACTGTATTTTGACTCATACTACATATATATTA
ATCGGTATTCTAAATGGAAAATATGCAGGTGTCACATTGCTTAACAAGAAAAAGGCGTAC
CTTGGTCGACAACACAAACTTGCACCGGATAGATAGTGCTCATAGATCAATTGTTCTTCA
ACCTTAATTCATGGTGCTCTGTTTCTGAAGCTCAAATCATGTTTTCTTCATGCAGAATGT
ATACATAGTACTCTCTTGCTTTATCTCAAGTGAAAACCATCAATCCATCATTGTGATCTT
GCCCATAATCACTGCCGCGTTCGGAGTAAATTACGATCCAAACAAAAGCAAAGGATCTCA
GTTGCAGACAGTGCAAATCTACATGGCATGATTACGATGGCAGGGGCCCACTTTTTGTCT
GGCTTTGACCATATTTTTGTCATGGAATCGAGTAGAGTGCACGCAAGGCATCGCCGGTAT
TATTTCTCCATTCGCTTCACACTCTGAGGATTACCGATGAATCCATTCATGGGGGGCTAG
GTGATAGCCCGGTGCTGGAAGCATGGGTTAAAAAAACTCTCAGCGGACGCGCACCTTGAA
TATAACCAGATCCCGTAAAAGATCTCGAATTATAAAATAATTGTCGGTTTACGTTTTGAA
TAAAAAAAATTCATTCCATATCTCGCGAAATTAACGGTGCTGGATTTTTCTTGAAACCTT
GTACCTTAGATTTCCTGTTTTGCACGGTGTTTTACGGTTTCTTTTATTGCACAAAACAGT
TGGCGGGAGTGCAACTTCAGCAGAAACTGCTTCCGTCACTTTGACAGCGGCCACGCAGGG
GCAACGGCCCACCACGACGTCAGCTTGGAGGTCGTGCGCCTTCCTTAGGCCTCATTTAAC
ATGAAGGAATTGGATGGGTTTTGAGGTCATTATCCCTTGCGTGGGCCAAAAACCCCTACA
ATCCCTCTGAGCCCATTTGGTGGACACGGGTTCCCCGGCCCAGCAACCCTCGATCCATAA
AAAATACTCCAACCCACGCGGTTCAAAGGCCTCCTAGGGGTAGGCGTGGATCTCGGAGGG
ACGACGCTGCCAGTCGTCGCGCCCGACTCCTCCTCAACCATGGCGTCGTATCCTCCTCAT
CACATTGCCTCTCAACGCCGGCGAACTCCTCCGGCCAACAGGAGCTCCGGTGGTAAATCG
TCGCCGCCCCTCACCTCCCCCCTTCCCCATCCCCTCACTCTCCCATGGTTAGTCTTCGTT
GTGGCTGCACGCCCTCCGTCCACCTCGTCCTCCGCCTCGCACGGAATTCGTCGAGTGCGA
GCACCACCCTTTCTACCTCCACCGGCCACCACTTCTATTGAAGCAACAACGGCAGCTGGC
TCGCGCCTATGACGGCTTGCGCCGCACCTGTTCACCAGATCTGAGGCACCAGCAGTGCAC
CTATCCAGGAAACGGTGGTTGGGCTCGGGCGGCGCCGTGATACATCTCCATCGTATATAC
TTTTCCTAATGCTTTTGCTCTTGTTTTGCACTCTAGTTCGCATGGTTTGAATGAAACTAA
CCCGATGTGACGCTGTTTTTAGCAGAACTACCATGGTGTTGTTTTTGTGCGGAAATAAAA
GTTCTCGGAATTGGACGAAACTTTCTAGGGATTTGTTATTGAATAAAATAAAAACACTGG
AACCAAGACCCACTAGGGGGGGGGGGCAGGAGCCCACTAGGCACCAGGGCACGCCACCCC
TGGCACACCATGATGGGTAGTGGGCCCCTCGGGGCTCCGCAGAACCTATTTCCAGCACTA
TAAATTCCTATTTTTGGAGAAAAAATAGGAGAAGAAGTTTCATCGCGTTTCACGATACGG
AGCCGCTGCCACCTCGTGTTCTTCATCGAGAGGCCAGATCTGGAGTTCGTTTGGAGCTCC
AGGTAGGGGAATCTTCGATCTTCGTCATCATCAACTCTCCTTCATCGCCAATTCCATGAT
GCTCCCCATTGGGAGTGAGTAATTCCTTCGTTGGCTCGCTGGTCGGTGAGGAGTTGGATG
AGATTCATCATTAATCGAGTTAGTTTTGTTAGGGCTTGATCCCTAGTATTCACTATGGTC
GGAGATTGATGTTGATATGACTTTGCCATGGTTAATGCTTGTCNNNNNNNNNNNNNNGCC
ATGATTTCAGATCTAAACTGTTTATGTTTTCACTATTATATCTATGTTCTT