Map Locations of contig_43397 (9216 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_43397

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_59244 1 729 bp MLOC_59244.1 Available Available LOC_Os03g55240.1, FRAME:-2, EVALUE:1e-85, 13103.m06009 protein cytochrome P450, putative, expressed





CDS Structure of MLOC_59244






Contig Sequence (9216 bp)

>contig_43397 9216 assembly3_WGSMorex_rbca.fasta
TGATGGGGTTATGTACCTAGGATAGGGTCACAGGCCTGACCTAAGTGTCCTATCTAAGGG
TACCTCATTATTAGCTGGAGGATCACAAAGAAGATTCCGACTGGATGGTCATGGCATCCA
AAAAGTCACTCGGTAAGATGTCACTCGAAAGATATTCCTGTTCACTCGACAACCAACTTC
CACTCGGAAGACACCAGTCGATCCAAAAGACCAGAAGTCACCTCCAAGGAGGCCAACGGG
CGAGCGCTCAGCTGATGGTCATGAATAGCATTTATTATATACATACGTTATCAGTAACGT
ACACCTTTAAACCTTATTGATCGGACTCTTAGATGTTGGGGCCTTGATGAGGGGTGGCGC
ACTCTATATAAGCCACCCCTCACCTCTGGCACAAGGGTTCGCACCCTTTGTAACACACAT
TCCACACCACAAGAGCTCTCGAGCACTCAGACATAGGGATGTTACCTCTACGAGAGGGGC
CTGAACTCATACATCTTGCGTACAAGCATGCCGTCGCAAGGACTCTTTCCTCTTCATTCG
TACCCTACACCTCTACTGTCTATTCCCACGACAGCTGCAGCAGGTGGAGATGGGGAACCT
CTTTTGAGCCAAATTGCATACACACGGGGATCATTTCACACGGCGATCTTCACCTTCAAC
CAAGCCACAGGTCGTCAAGGTGTGCGTGCGCGCGTGCGACGAGCTCACGATTCATCGACG
ATTCGCTTGCATTCTTGATCGGTATATTAACGTGTATTTAATTTCCTGGAAGATCAGTAT
ATGGTACGATTACAGTTTTTAAATAAGGTTTTCACATTTTATATTATAAAACAACGAACA
TTGATCATAAGGTAATTGCTTGAACAAACATTACATCAAACCCAAGAAAAAAATGAATGC
CAACAACGGCAGCTGGGTAAGCACAGAAGATCCGTCATTGTTGCGCCCTTCATCAGCGTC
CACGCACGCGTCATGGCACCCGACCACCGCGTACCAAGCAACACCTTAAAAAAATGCGAC
GCCAACGACACTGCTGCCTGAACACGTCCTAGGGTTTCTCCCGGCACGCGAAAGGGAGCG
GGGGATGGGTAGCACCGACGCCCTTCAGGAAGGAATGGCGGCACCCTCATGCGTTACCGC
GTTGGAGCCGGATGAACCGGCAAGGATTTCTCCTGCACCCGAAGCCCTGCCACCCACTCG
AACCGGAGCCATTCAACCATCTTGCCACCCGCAAACACGCACCACCACAGTCTTGGACCA
TCCACGCCGCCCCGCAACGAACACCACAATGAGGTCGAGAGAACAGAGGCAAAGAGCGTC
GAGAGGCAAGCACGGAAGCACCGGAGCCGCACGGGAGGGAGACGCCTCCACCGCCATTGC
GTCGGAGGCTCGTGCCTCCAGCAACAATGCGGACTACCAACCCAAAGCCACAGCCCCGGC
CGCCGCGCTGCTGTACGCCGACAGCCGAGCTGCCACCCTCACTAGCCCGACGCACAACCG
CAGCCTCCCGACAACCATGACAACGCCACGCCCTGTCACCGGCTGCCTAGACCCAGAAGG
GGGGCAAAGGGGCCATATCTGAGCCTAGCGGGCGCCGCCGCATCACCTCGTCGCCAACGA
CGACGCTACCGTCTAGAGTCCGTCCCCGATAGCACCAGAAACATCCATCGTCGCCTAGGG
GCATCGCCCGGAGCTGCACCGCCCCGCGTCGAAGGAACACTAGGAGGGGAAAGGCTAGGG
GTAGCCGTCACCAGCGTCGCCAGTGCCGACGGTAAGGAGAGGGAGGTGAGAGGGGGGAGT
TCGAGGGAGGTGCGGGGCGCGGCCGGTCCGTGTCACACTCCAATCAACCTATAAAACCTT
CGAGAGACTCACATTACGATTGCTTGCTGGTGTAAGTGCATATTTTGCGGTTTTTGGCTG
AGCTGATTCTTGTAATCATGTTCACAACTCACAAGCGATCAAGAGGGCTGAGGCAACCAT
CACAGAAAGGCTTCAGGACCTACCGCTGCTACAAACAATAGGCCAGTGCTTTTTAACTAC
TCCCTCAGTATTACTATTAAAAATCGACTCGGACTAATAAGATCTAGGACACTGTTAGTT
CCGATTCTTTTTAAAACAAGTTCATAAGTAAGAAACGAGACTTTCCACTTCATCAGGAGG
CAGAATATGACGACGAATGCACCACATCACCAGTGCAGAGTAAACAAACCGCTGCGAACC
CAATCCGCCCGGTGGCAGAGTGATCAACGAGTCAACGGAAGGATCCCCAGATGGCCAGAT
TGCAAGCCCCGGGAAATTGTCTAGCGAGATGAGCGAGCTCCCGAACACCCCGCTCTTGCC
CGCCGCCGCCACCTCCATCCCGGCCGAGGCTCCCTGGACCTGGAAAGACACCATTCCCGG
TGACGCCGAGCTCCGCAAACTCGGCGGAGACGTTGTCGCCGACGAGCCCTGCCACCTTGG
CCACGGCGAATCACTGGTAAGCGATTCGATCCAGCTTTCAGGTGACCCTGCGCCGGCGTG
CAACCAAGCTCTGTCCGGCCTTCACGCGTCCGACAACGGCGTGGTGATGGCATGGAAGGA
AAGCTTCAAGATTTTTTATTTTTTTCATTGTATTTCGAAAAAAAGGAGCCCCCTAGCATT
ATCCCCCCCCCCCCCCACACACACACACTAGTATCTTAGGTGTTCTAATGCACTAGCTCA
TCGAAAATGCATCTAAATGTCATGAAAAATTCTGGAAGAATATAGATGAAAAAGACATAA
TATGCATTTATTGTGTCACAACATATCAAATTTCAATTTTGTTTGTGGATCCTGATAAAC
AAATAAATCACATCGGATTATGAATAGTATCAAATCTAAATCTGGAATGAACATAATCAC
ATAAAAATAAATTCATAGTCGAATTTGTTTTGTTTTTAGAGCTGTGAGTCAAATTAGCAT
GTAAAATTTGACACATTCTAGATGTATCTCTTGTGAATATTGTCAATGAAACTCTTAATC
TGTGTATTTGTTAGACATGCTAGTCAATCATATAGCATAAAACCAATAAATCATACCCTT
CAAGAAGCTCTTATAATACCCTTCATTCACGGTTAGTTCTTTCTAGTTTATGTTGCTTTC
CATGGGCATTTGTTTACCTCTTTTCGATACAGAAGGCCCGCTTGTGTTCCTAAATCATCA
ATTTGACCAGCGAAATATGGATTATATTATACAAAAGGAATACCATTGAGTTCAAATCAA
CAAGTATATAACTCATATTTTGTTTGTCAAATTGGTGATCTACAAATATGGCAACCTTTC
TATACCAAACGGAGAAACTATTTAGTAGACCCTCAATTGAAATTGCCATGTAACAGTTAT
GAATATAGCGACTCTCTTGTTATTATATTTTGAAATTTTCCATATCGCAGTTGTGGAAAA
GGGGCCTTGGAGAAAGGATAGTGGCACTACAAAAGCTGGTTTTTCCATTTGGGAAGGTAA
CGAAATGAAAAGGGGTGCAAAATGTGGAAAAGCCTTCGGTTTTTCTGATAAATCCTGTTT
ACTGCCAATCTTTGCTTTAAGTACTTGCATTGCCTTCCATTTTGGTGCAACATCTAAAGT
TAAACACGATAAATTTGAAGCAATTATTTGGACCTTACCCCCACCCCTCTCCTTCCATTG
CAGAGGCATACATTTGCAATTACAATTTTCCATTGCTAGTGAAATGAAGTGATCAAAGAG
ACAGACGGAGCCGCACATTGATAACAAATGTTGTGTACTCCCTCCGTTTTTAAATATAAG
TCTTTTTAAAAATTTCATTAAAAAACTACATACGAATGTATAGAAATATTTTAGAGTATA
GATTTACTTTATTTTCCTCCGTATGTAGTCTCTTAGTAAAATCTTTAAAAAGACTTATAT
TTAGAAACAGAGAGAGTACATAATTAGGAAATTAGTTCGACCTGACCCCCCGCCCTCATT
GTAGAGACGCACACCTACAATTAGCGTGGTCTATTGGTAGTAAAAAAAAATTCTTCCCTC
AAAAAAAAATCTCTCATTGTAGAGATGCACACTTACAATTACAGTAGTCTGTTGCTAGTA
AAATGAAGTGGTCAAAGAACTAGACAGACCCGCAGATTGCTAAGAACAACTGATGTGTAC
ATACTTAGGCCTGTTTTGTTCATAGAAAAAGTGGAGCAAACGCATAGAAATAGGAAGTGT
GTTCTGATAATACTATTCATTCCGTTGGTTTAAAATAAATGAAGCAAAAAAATGAAAAAC
ATTCTTTGAATCAATTTAAAGAAAAAAGACGCAGAAATTTTCAGTACCCTTGGGGGTGGG
CCCCTCAAAGACTTACAAAGGTTTACTTAACCTTTCAAACTACTTCTCTCCCCCTGATTT
TTAGTGGAGATGGGGCCCCTCATCTCCTCAATTACCAATCACAATCCTACACATCAGTTT
GTACGTAAAATCTTTAAGTAAGTCTTTGTAGATGTAGCATTACTTCTTTAAGATCTAATG
CATGAATTTGGAAAATGACTTCTTTCATGGCACAAGAACATTCTGTAATATATCTTCTTG
GAGTTTGACTTTGATTTTACCCTCTTTGCGCGTTCGCGAGTAAGCGGGCGCGGCGAGCAC
GCGTGTGTTTCCGATAGACTGTTTGTTACAGAAAAAAAAAAGAATCCATGTATGTGTTTT
CTTTTCCTGTTGACCAAAGCCAAAACATATGTGTTCTCTGATTCTCTGTTTGCGCATTTC
GTATTCTTGTACATTTCCTGTTCTAATTTTTTTAGAGTTGTGTGAACTAAACAAGGCCTA
GTTGCAACTTTGCATCCTATACTACTGAATTACTGACGAATACTACGAAGACAGTACCCT
TTTTAGAACCACAGTAGTAGAGTTTAACCAGACAATGCATCACTGAACCTGCTTTGACTG
ATCGGTAGATCTAAACTGCCAATGCTTGGCACCTAAACCTTCTGTGGCTGCCTGCCAGAC
CGACACGGCTTGCATCCTGTACGAGGCGCTCGACTACATAGGCTTCCTGCACGGCCAGGT
TCAGTTATGTTCATACGTACTACTCCCACCATCCCAAAATTCTTGTCTTAAATTTATCTA
AAAATGAATGTATCTGAATACTAAAACGTAACTAGATACATTCATATCTAGACAAATTTA
AGACAAGAATTTTGAAATGGAGGGAATATTACGTACCACATACCCGCTTATCGTTAGGCT
TAGGCAGTGTGTATGGTGTACCACATGCTAACACTGTGTCTGAACTCACTGGTGCACCGA
CACCGTTGATCGCCTTTCGCGTGTCAGGCCCTCAGCTCGCCGTACCTGCAGTGTCCGCCG
CCCCCTGCGCCGCGCGTCCCACTCCCGGTGAGAGCAGGCGCCGATCGAGCCGGCGCGATC
AAGATCTGTCATACGTGATCTGACGTGTGGTTTTACGGACGATGTGCAGACGGCGGTGGA
GCCGAGCGACCTGAGGAGCCGGGGGCTGTGCCTGGTGCCGGTCTCGTGCAGCGACCGCGT
CGCCGCCGTCGACGTCTGCTCGTTGGTGGCGGCGATGAGGTTGACGGCTGGGGAGGAGGA
GGAGGACACGGAGGCTGCCGTTGCGATGCTCCGCCTGCGTGGCGATCATCATCCCGGGGA
GACGGTCTAGCTCACAGCGATTGCAACACTCCCTACAGCTACAGGCTTGTTAATGTTACA
GCATCTGAAGGGTTCAGAGACTTCGATCAGACTCGGGGATAATTACTACTGTTACGACTC
CACCTGCTTATTGTTGTCCTTTTGGAGCGGCTTTGTGCATCCATGTTTAGATGGTGGTGG
TAAAATGTGTATGTAAGTACAAAACAGATGGTGGTGGACAAAATTATAGGCGTATTTCGA
TCGAGTAGGCACTACCTGAAAGTGGGTCGTCTGCACTCAAGGAACCACGGGTTTTTGGGA
GACGGCTCACTTCAGAACTTTGCTACTCAATAGAAGCTGAAGGCCCCGACCGAATTGGAA
CCAGATTGACAAACTGCTCTGAAGCACAGGAAAAACTGACTTAGAGTGCTGAATATGCTG
CTGGGTGAGTCATGTATCTGATATTGTTATGCTGTTCCTCTTAGACATACTAGTTGAGTG
AGCACGAGCGAGGTGTTTTAAATTTTTGTTGGTTTTTTCACCCGAATTTTCTGTTGTTAC
ATGCATATCTGTTTGGTTTCAATTTATATATCGGAAAAGAAACACGCATGCACTGGTGCC
CACGTGTGTGGCTGTGTGTAGGCAGTCATAGTGCAACAGCACACTTTTGTATATAGCACG
TACACGAACAAGCTAAGCATGGAAAGCAAGATCCGATGGTTGTCAGAGCAAGGCTCGATA
TAATCCATGGCGCGGTACAATTTACCTCCACGACGTGCGCCTCCCAGCGGTCACAGTCTC
ACAGCCCCCGCAGGACATCGGCCATGGCTGCCCGCGGTCGGCACATCGCCTGCAGCGGCA
CCGCCTTGGGGAGCGTCAGCCCACCTCCTTCGCCCATGTCAACCTCAGCATCATCAACCC
TGTCCCAATGAAAGCACTGCACCAGCGTGCCCAGAACCATGCCCAGCATCCGCAGCGCGA
GGGCCTCGCCGGGGCACTTGCGCCGCCCCATCCCGAACGGCATCATGAACATACCCTCGG
CCTTCCCGTCCTCGAACCGCTCCGGCCTGAACTCCGTCGGGTGCTCCCACGTCGCCGGGT
CCCTGTGGATGGCGTACGCGTTCACTAACAGCGTCGTGCCGCTCGGGACGTGGTAGCCCG
CCACCGTGCAGTCCGCGGAGGACTCGTGCGGGATCATCGCCGGGACCGGCGGGTACAGCC
GGAGGGTCTCGCTGATGATGCTGTGGAGGTAGCCGAGGCGGGGCAGGTCGTCGGCGCGGA
GCAGGCGGGTGGTTCCGACGGTCGCGTCCATCTCGGCCTGCGCTTTCGCCAGGGCGTTCG
GGTGGTTGAGCAGCAGCGACATCGCCCACTCCGCCGCCGTCGCCGTTGTCTCTGTCCCTG
CGCTGAACATGGTCTGCCAAGGAAACGAAGACACGAAGACTGATCAGTCAACTCACTGAG
GTTGGGACTGTGAGAGTGAAAGACGACAAGCAGTGAAATGGAAGCGCTTACCATGCACAG
AGCCATGATCACCTTGTCCGTGTAGATCTCCGGCTCTGCCTTTTGCAAATCGAGCAGCAC
GGCGATCATGCCCTTCTTCTCCCCCTCGCCGACGCCGTCGCCCAGCCTCCGCCGCTGTGC
GTCTATGAGCCGCCGCAAGAACGCGTCCCTCCTACTCACCGCAGCCACGATCTTGTTCCT
CACGCCGCACACGTCAAACCACCGTAGCACTGGCAGGAAGTCCCACATGTTGGCCCCGCC
GAACAGAGGCACGATCTCATCCAGCGACTTCTTGAATTCTTGTGTCTCCGGCGACATGTC
AGTGTCCTCGGCCCCCTCGGGGCGCGACGTCTTCGTCTGCGCGACGGTCTCCATCAAGGC
GCTAAGGGACACCTCGAATAGGCTCCGCTTGAGCTCCACCAGTGCGGCGGCGCCGGGTGC
GGCCACGGCGGCCCGTGACAGGCGGCGCGCCATCGCGCGCACCTCGCTGGCGATGTCCGC
GGTCATGCAGCCCACCCGGTGCGCGGAGAGGAGCTGCACCGTGGCGACGCGGCGGAGGTT
GCGCCAGTACGGGCCATAGGGGGACGTCGGGAGCGTGGTGCAGCCGAAGCACACCAGCTC
CAGCGAGGGGAACCGCGGTCGGTCGGCGAAGGTCACGTCGTGGTCCGTGAAGCACTCCCT
GGCGCCCGCTGCCGATGACACGACCACGGCGCCGCGTGAGCCGAGGCGCAGGGAGAAGAC
TGGGCCGTGGCGCGCGGCGAGGCTGGAGAGCGCGGCGTGGAACGGCCTCTTGAGGAGGTG
GAGGTGGCCGAGGAATGGAATGGCAAGGGGACTTGGCGGCAGCTGCATGCTCTTGCTTTT
ACCATCGTTCTTGCCGCCCGTGCCGCTGCCGAAGAGTGGGTGACAGAGACGGAGACGGAG
ACGGAGTAGTGAGGTGATGAAGATGAAAAAGGCGGCCGCGCCGGCGAGAGCGGTGACAGT
GTTCATGCCGTTGTAACTTGGATGAGCAGAGCTGATTTCTCGTTCGATTCAGTGGATTGT
TTGGGCGGTATTTTATAAGGTCCTCGACATATTTTGGCTCATAAGATTTGGATACGAAGC
CACTGGCAGAACTGGGAGTGCCATATGCAAGATCCAAGGTTCAGGCTTCAGAAAATATAA
GCAACATTTGGCTTGATGATGGCAAGTCATGCAACCCGTAAGCCAGTACGTCATGGACAT
GTCAATTAACGTAGTAGTCCAGGACAAACGAGGAGAAATTTTGAGACTGGAACTGTGTGC
TTGGGATCGTCTCAGCATCTCCAGCAAACAGAGTGGTTCTTCAGCCTTCAGTTGTGTGGA
TTTCGAGGTCATTGTACCATACAATTATGAATTGGATGATGCCCACCTTACAATGAAATC
ATGCATGGGAAAACCCCGCCATAGTAAGATTCAACAATCCATTAAAAAATGTTTTTCATT
CAATTATTCTACTTAAATTCAATAAAATATTTTGTAACTATACATAATCAAATATAACAA
GTCATATATATTTTTAAATTAAGTTCTCATGTCATCAGCCTAAATTTGTATCAACATTCA
TCATCCAATCCCCGCAGCAATGCATGGGGTATCCTCTAGTTTAAAAAATATGCATAGTCT
TTATCAATAACATAATTGTGTTGTCCTTCCAGAAAAATGTGTTTGTGGGTCATTTGAAAG
TGAACATTTTGTATTTTATGAACATTCATCTTGATTGTACAAATATTGTTCATATTGTAA
CAAAAAACATTCATCGTTTATTTAGAAAAGGTGTATCATGCATTCCTCATACAATACTGA
AAATACTCAAAACTTTTTCGGAACCCGAATACCACTTTTTCATATATAAATATTTACCTC
TCGACCATTCTGATACTCACCGTGACATCCGGGATCTTATCCGGGACTCCGAACAACATT
GGACCAACAACATACATAACTTAATAATACCATGTCGTCATCGAACGTTAAGTGTGCAGG
CTCTACGTGTTCGAGAATCATATAGACATGACTGAGACATCTCTGCGGTTAATAACCAAT
AGCGGGACCTAACATATTGGTTCCTACATATTCTAT