| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_43360
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_59201 |
1 |
1875 bp |
MLOC_59201.1 |
Available |
Available |
LOC_Os03g58270.1, FRAME:+3, EVALUE:8e-77, 13103.m06403 protein retrotransposon protein, putative, unclassified |
| MLOC_59202 |
3 |
1783 bp |
None |
Available |
Available |
LOC_Os01g19470.1, FRAME:+3, EVALUE:4e-119, 13101.m02118 protein nodal modulator 1 precursor, putative, expressed |
| MLOC_59203 |
1 |
579 bp |
MLOC_59203.1 |
Available |
Available |
None |
CDS Structure of MLOC_59201
CDS Structure of MLOC_59202
CDS Structure of MLOC_59203
Contig Sequence (10364 bp)
>contig_43360 10364 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGGGGTAATACCTCAAAGGGGCCACCAACCACATGACACATAGTGTGG
AGGTCTTCTTCGGGGTTTATCGGTCCGTGGTCGGCTTCGTCATGTTCGGCGATGGCTTGG
TGGTGAGAGCATCCGGGGCTGCGGCTTGGTCGTTTCTAGTGACAAGTTGGCACACACATG
GTTCTGGCAGCGTCTATTACATTCCCAGGCTCCGCAACAACATCGTGAACCGTAGCTAGA
CGAGAACGGCGCTGCCATCCACATCAAGCAAGGAATCCTTCACATCTGGGATGGCAGGAG
CGTCTTCTTGCCACGGTGCCACGCAGATGCAACTGGCTATATGTGGTGCATTTCAACTTC
ACTCCCCCTGGCCACACGCCACAACATTAATGCCTGGCAATGACATGATTGGTTTGGCCA
CATCTTCTTTGACGTGTTGAGACGTATGTCTCACAATAGGATGGTGCGTGGGCTGCTGGA
GCTCGAGCATGTGGACCAGCTTCGCGATGACATCACCACAAAGCATCGGCACGCTCCCTA
ACCCCAGAAGGCAACTTCAGGGCTGAAGGACGCCCCGGATCCCGTCCATGGCGACGTGTG
CGGGCCTACCAGCCCCACAACCCAAGGCGGTCATCGCTATTTCTTGTTGATGGTTGATGA
CTGCACCCACTACATGCGGGTGATCCTCCTAGCAGGAAAAGGGGATGCCATAGCTTTGAT
TCAGCAAGTCCAAGTGGTGGGTGAAGCAGAGTGTGGAGGGCCACTCGTGTCTTCCGCCCT
ACAACGGCGGCAAATTCACCTCGTGGAGTTTGCACACCAATGCGAGGAGCAAACAGTGCA
ACGTCAGTTCACGGCGCCCTACTCCCCACAGTAGAATGGGGTAGTAGAACGCTTGGATCA
GGAGGTGGTCGCCATTGCTCGTGCCCGGCTGAAACAAAGGAAGTTGCTAGGAGAATTTTG
AGGGGAGGTGGTCACAATTGTAGTTTTCCTGCTGAACCGAGCCCCCACCGAAAGTCTGGC
TGGTGTGACGCCATTGGAGGCATGACACGGAGGAAGCCTTGTGTACCTCAAGGAGGTGCG
CATGCAGCTTCACAAGCTCAATGATCGTAGCTCCATGGCAACAAGTGTGTCCATATCACC
CGTGATGTCATCCTTGATGAAGAGGCCGGCTGGGATTGGGCGGCTGTCAGCTCAGATCCA
CCACGCAGTGATTTCATCATCACGAAGATCCAACAAGTTGCCCCTTCCATACCAAGTGCA
GGTGTAGGGGGAGCACCTTCCCTTGTTTCTGCACCATCTCCTGCTGCACAGCCATCTCAC
CAAGCCAATCTCCACGGCCAACTCAACCTGAGTTTGTGTTACCATCGCCCAATGGAAATG
AGCGGCTGGACGCGCTCATGATGACACACCATTGCACTACTGTGGCATTGCCAATGTGAT
CTTCAGCACCCTGTTCTTGGACATGCATCACGCGAGCTCGTCGATGACACACTCTACATG
TATTATGGCGTGCATCCGTGAAGGAAGAGATGGACGCTCACCCGGGAGCTTGTAGACCTA
CCATGCGTCCATCACCCAATTGGCCTGCATTGGGTCTTAAAATTGAAGAAGAAGGAGGCC
GGCACCGTCGTCAAACAGAACGCACGACTCGTCGCCAAAGGTTACACGCAACAGCCCGGG
ATCCACTTCGATGAAGTCTTCGCCCCCATCGCATGCCTCGAGTCCGTTTGTCTTCTCCTC
ACACTTTGCTACCTATGAGGGGTGGCTTGTCCACGTCCAGTTGTGGACGTAAAATTTGCA
TTTATATGTTCATTCAGGTTTCACGTCCTAACAAAGTCTGGCAATCAGGATCAAACATGT
GGGCTAAAATTGAGCTGAGTGCAGCAATACAAGCAACACCTTTAAGAAATCAAAACTATC
TTGTGTTCAGCCCCAGCTCCTCTCCGCTCCTTTACTTTAGCCTATTTAAAAAATGTGGCC
ACATATCCATCTCAACATGAGCATCTCTGCTACACCTAACTGTTGCATGTCGCGTTTTAG
TTGTGGCCAACATTCGGCACCATACAACATCATAGGTCGAATTGCCATCCTATAGATTAT
GCCTTTTAGCTTTTGGTACACTCTTGTCACAGAGGGCTAGAAGCACGTCGCCCCTTCATC
CATCCAGCTTTGAGTCGATGACTCACATCTTCATTGATATCACCATCCTTCTGCAGCGTT
TACCCCGAATATCGACAGGCGCCCTTCTGAGGTACCACCTACCCATCAAGGCTAACCTCT
TCCTCGTGCCTAGTAGTAAACCGCACCTCATGTCCCCGGTTTTAGTTCTACTAAGCCTTA
CGAGTTCAGGGTTTGTCTCCACAACTCTTTCTATTAACCCCTGTCTGACTATTGTCGACT
ATCACCACATCATCCGCAAAGAGCATACACCATGGGGTATATCCTGGTACCCTTATGACC
TCATCCATCACGAGAGCAAAAAAGATAAGGGCTCAAAGCTGACCCTTGGTGCAATTCTAT
TTCACTTGGAAAGTCATCATGTTTAAAAAGTCATCTGTGTCGCCATCACTTGTTCGAACA
CTTGCCACAACATTATCATACGATCCTTGATAAGGGTAATGTACTTTTGTTGGGACTTTG
TATTTTTCCAAAGGCCCACCACATGACATTCCGTGGTATCTTATCGTAGGCCTTCTCCAA
GTCAATGAACACCATTCGGAAGTCCTATTTCTTATCTCTTCATAAGTTGTCCTATCAAGA
AAATGGCTTCCATGGTCGACCTCCTATGCATGAAACCAACTGATTTTTGGTCACCCTTGT
CATTCTTTGTAAGTGGTGCTCAATGACTCTCCCATAGCTTCGTTGTGTGTGTTAGCGCCC
TTGCCATGGCGACCCCACGTGTCGGTGAATCTGCCCGTCTCTCGACATGCTGGCACCCAA
CGCAATTCCGTAAGTGAAGGCCTAGGCCAGGTGCACAACTACATAAACCTCGTTGTAAGA
AGAGCTGGGTATCCGGTGGATCAACTGGCAAGGCATGACCGGTATCTAGTGGATCAACTG
GCAAGGCACGGTGGCTACCTTCTCCTACCTCTAGCTCTTTCCCCTCTTGCAAGAACTCTG
ATCCATTCCTGTAATCGACACTTCTAATCGCCATCGGAGAGTTAGATCTAGTATTGGTGC
TACCTAGATATCCCTACCCGTATAGTGTGGCTCATCAGCTTAATTCCACGGTAATTAGTA
CGACTTTGAACACCCCCCTTGTCCTTGAAGATCAGTACTAAACTACTCCGCCCTCATTCT
TCGGGCATCTTGTTTGACCAAAAAATGAGGTTGAAATGCTTAGTTAGCCATACTAACGCT
ATGTATCCATGGCTTCTCCACACCTCAATTGGGATACAATGAGGGCCCATCTCCTTGTCT
CCTTTCATCCTTTGAACCTAACCTCAGACTCCTGGATTCATCGCACAAAACCTCTATATG
TATCATCAAAGGAGTCGTCCAGCTCAATGGTAGGGCTCTCATTCTCTCTATTGAACAACT
TGTTGAAGTGCTCTCGCTACCTATGCTCTATCCTTCATGCGTTTGATTTGGTTGATATCC
CTTGTTTTCCTCTCTCGGATCTTGGCCATCTTATAGATGTCCCGTTCGCCTTCCTTCGTG
TTTAAACACTGGTAGAGGTCCTCATATGCTCGACCCCTTGCTTCACTCACAACTCGTTTT
GCAGTCTTTACCACCTTGAACTTCTCTATGTTGTTTGCACTCCTATTCAGGTGTAGTTTA
AAACTGTCTTCTCCTTAATAGCCTTTTGGACATCATCGTTCCACCACCGGGCATCTTTAG
CTTCGCTTCTACTTCCCCTGGTCACCCCAAACACTTCTGAAGCCACCTTTAAAACACAAG
GCGCCATTATCATCCACATATTTTTTGCATCACATCCTTCCTCCCAAGGGCCCTCCTTAA
TGACCCTCTCCTTGAAAGCCTGAGCTGAATCCCGGCTTCCACTACTTTCTGAGTTTTTTT
TAAAGCAGGGTGGGCATATAATGCTAAGGGTTATGGTGATGCACTAGCCACCAGATATGC
CATACAGACTGTAATTGGGCATCATATTCAAGTTTATTGGTTGGAGAGCCCTTGATGGTT
TGGTGGTTTTCTTGCAGGAATTTAAATTTACTCCATCAACAGTTGCTATTGATCTCAATT
CTGGGGAGTCTAGAGCGGTTGAGTTCCGTGCAACCCGTGTTGCCTTCAGGTTTGTTTGAT
TTTTCACATGTAATTTGATTTGCATGCATGTTCTAATTTGTTCCCATCTTTTCCCATCTA
TCGAAAGAAATCACCTTACAGTTTGCAGATAATTCATGCACATATCTCTGTTTGCATAGA
TTTCCATTTTGGAGCCCAATCATTTGAGTACGTACAATGATCAATTCTAGCTATGTAATG
CTCACGAGATGACCATTGAGAAATTTTTCAGTTCTAAAGAGGCCACTCAAATAATCAACG
CCCTCATATTTAGCTGTATGCGCACAATAGGAGTAATATGTTAATATTGCTAGTGTTATT
CTGGGAAATGTAACTGTTATACTCTATGAGTGCTGAAGTGCAGCAGTGGACCTACCACTA
GTGTTTTCGAAATTATGTTTCCTGCATGATTCCCACATGACGCTAATGTGCTCATGAGGT
TCTAAATTAGTCAATATAGCAGTTCTGGCAATACGCTTTTTGACTGAACCAATTTTGTGC
TACTAACTAAACCTGCTTTTCCATGTAGTGCCATGGGTTCTGTAACACTGTTAACTGGCC
AACCAAAGGAAGGTGTTTTTGTTGAAGCTAGATCTGAATCAAGAGGTTATTACGAGGAAG
CTACTACAGATTCTCTTGGTAGGTTCCGTTTGAGAGGACTTATCCCTGGCTCATCTTACT
CAATAAGAGTAGTTGCAAAAGATAATCCCAGGTTGGCAGCAGTTGAGCGTGCTTCGCCAG
AATCTGTATCAGTTGATGTAAGTCACTCTTGATATCCTTTGCACGCATTTGCGTACTGCA
ATCTTGTCACTAATGACAGAGGCACTGCTTTTTTTTTAATTAGGTAGATGAGGAGGACAT
CTCTGGTATTGGTTTTGTGGTTTTTGAACGCCCAGAAGCAACAATTTTGGGCTGTCACGT
GGAAGGAGATGGCATTGATATGTTGCAGCCACATTTATCTGTTGAAATTAGATCAGCTGT
TGACCCTTCTAGAATAGAATCTGTGGTTCCTGTTCCTCCTTCCTACCACGTTGAAGTAAG
AAATTTACCCGAAGGAAAGCATTTTGTTCAGCTTCGGTCTGGCCTTCCATCACATACCAA
TATATTTGAATCGGAGTTGGTTGAAGTTGACCTAGAAGAGCAACCTCAGATTCATGTTGG
TCCTCTTAAATATAAAACTGAAGAGCGGCATCACAAACAGGTAACATTTTTCATGCACTT
GCGTTAGCGTTGCATTACAATGATGTATACTTTACTTGTTTGTCTTCTCAAACTGGGAAA
TTTGAGAAGAAATTAGCTTTTTGAAACCATTCCTTAAGAGATGCCTGTCTGTAAATGAAT
GATAGAAAATTTTGAGGCTTTATTTAACCAGAACAGATATCTTTGTACTTCATGCATTTA
TATGTTTTGTTGTTGGAAATTGTTCACATGTTCATAAATTTTGTGTTTAAGGTGTCATCT
AATTGCTATCTCTTGCAGGAACTGACCCCAGCCCCAGTTTTACCTCTTATTGTTGGAGTT
TCTGTTGTTACAGTCGTGATCAGTATGCCAAGGTTGGTTGCTACTCCCTCCGTTTACTAA
ATATAAGTCTTTTTAGAGTTTTCACTAGGTAACTATATACGGATGCATATAGACGTATTT
TAGAGTATAGATTCACTCATTTTACTTCGTATGTGGTCTCCTTGTGAAATCTCTAAAAAG
ACTTNNNNTTAGGAACGGAGGGAGTATATCATTACAAACCTCTTTGTGTAAACTTAAGTA
ATCATGGTTGTAGGAACTGCTTTTATATGATATCATGATGCTATAGGTTGAAGGACTTGT
ACCAGAGCGCTGTAGGAATGACTTCCCTAAGTTCAGGAAACACACCGAGCAGAAAGGAAC
CACGGAAGACAATATTGAGAAAGAGAGCCTGAAACATATGATCCTGATTAGGCGTGGAAA
ATTGAACTTACAGGTTGAGTACGTCAGTATTAGAAAGTAGCTGTTACTTCCCAATGTAAT
TTTGCAGATGACGAAGCTAACAGTTAATATTTTGTACCATTGTTGACTAATATTTTGTAC
CAATTGAGTACAAATTTGGTCGCATTGTTCATTGAGCATGTCGTATGATGGGAGTATTGT
ACTATAATTTTGAGAGCCTGGCGTTTGATTTCTGGTATCCAGAGGGACTGTAGTGTCATT
GTTGACAGTTCTAGAAATACTTCGATACCAGCGGCTGTTTGTTTCGTTTCGTTTCGTGGG
CATCAGAGAACATAAATATGTACTACTGGCTGTATTAAAGCAACTCGCGTTTGCTACAAT
TGATTGAACTTTTTTCAGTCTATTTTTCGTGAGCCCCTTGTGTTAGACTGTATTTGGCCT
ATGTTTGATATATGTCTTGTCCGTCTATACCTCAATATAAAAAGACTCAAAGAGCCAGAT
CCAATTGATCTTAGCCATTAAATCTATGTCAATCTAATGACACAGATTGCTTCAATGATG
TGCGCTTCAAATGTATAACACGCAATTAATATCATATCATATATAAATTGTGCTAATGTA
TGATTTGCTATCATATCAAATATAATTTGTGCTAATGTATGATTTGCTATCATATCAAAT
ATAAATTGTGCTTACCGTACAAAATACCCTACTACCGGGAAAGGCAACATAATAGTAATA
GTGCATCAGAGATATATTTGTTGTACATGTATTTGATAGTCTAAGATTTATAATTTGTTT
TCTACCTTATTTCTAGGAGAGGCTCTTTGTCTCCTAAGTTTGCGTGTATATATATAGGGC
ATGGATTTGCTATCAACACTAGCTGGGGTGGTTGCTATTTGTTTGCATTGAAATTTGCAC
TTTCTTATAGATAAGGTTCTCTCTCTCACATGCACACACACATGCGCGTATCCCAACATA
TAACGTGCGGCATAGTCGCCCTCGTCGTCGCTGTCACCGCCTGACATCGCCGCCGTCGCC
CTAGCCCTCCTCGCCTCCCTCGTCGGAGGGCGTCTCGCAGCCGCCCTGGCGCCGCCGTTT
TGGGAAGCAGTCGCAGCTGGATTCGTCGACTCTGGCGGTCTGCCGTGCTCCCTTCTCCTC
TGCGCCGCCGTCGCCCTTCGCCGCCCTAGCCCTCATCGATTGCCCCGTCGGAGGGCGTCA
AGCAACGCCCCAGTGCCGCAGTTTCGGGAAGTAGCTGGATTCGTCAACTCTGGCGGTCCG
CCGTGCTCCCTTCTCCTCTGCGCCGCTGTGCTCCCTTCCCCTGTGCGTCGCCGTCCACAA
CAGTTCTGCTCTGCGCCTTCGTCCACGGCAACAACCAATCAAACCGCCGACCATCTTCTT
CCACCCCAAGTAAAAGTTGTTCGACGAAATTTCCCAAGGGAAAAAACGACGAAACTTGAT
GGTTTTAATTGGGATTGGATAGTATGTTTGACGGTGGTTGTCTACATCGTAGATGACCTC
AGTTGACTCCTCATTCATGGAGCATTCATCATGGGATGAGGAATTTGATTTGCATGAAGA
AGAGGACATTGCTATGCTTGTGGCCATGCACAAGGAGAAGAAGGCAAAGCACGATGGTTC
CGTCTATGGTCGTGCGTTCATCCACATTTGCAATTCCGTGAAGCAGCACAATCCAGCCTT
CGAGCAGAGAAGGAACTGTGCTGGGTTGCTTGGCCATAGCATTGAACACAAAGTCACTGC
CGCTTTGCGCATGATGGCATATGGTGTTCCGGCAGATTACATTGATGACAACTTGGCGAT
GGCAGAGAGCACTGCTATCTTCTATGTCAAGCAATTTGCAATGACTACTGTAGAAGTGTT
TGGTCCATAGTACTTGAGAGCACCCAATGCTCAGGACACTCACAGGCTTTTGGAGATGAA
CAAAGCTCGAGGGTTTTCAGGTATGCTCAGGTCCGTGGATTGCATGCATTAGAAATGGAA
GAACTGCCCAAAAGCATGGCATGGACAATTCAAGGGTCGTGGGAAGGATGCCACTATCAT
TCTTGAGGCAGTTGCTGATCATTAAAAATGGATTTGGCATGCATATTTTGGGATGCCTGG
ATCTTGCAATGACATCAATGTGCTCGACCGGTCACCTCTATTTGCCAAGTTAGCAAATGA
AGAAGCACTACCAGTGACCGTCGAAGCAAATGGCCGCACATACAACACTATGGGTACTAT
CTTGCAGATGGGATCTACCCAAGATGGAGTACATTTGCCAAGCTGGTTGCAAAACCTAAA
GGTAAGAAAGAACTCATCTTTCACAATGCACAAGCGACCGCTAGAAAAGATGTTGAGAGT
GCTTTCGGGATTTTGCAATCTCAATTTGCTATTGTGCGAGGACCATCTAGATTCTGGGAT
CAAAAGATCCTTTGGTACATCATGACTGCTTGCGTGATTATGCATAATATGATCATTGAG
AACGAGCGTGGAAAATATTTAGATTACAACTTCTATCACTTGATGGGCATTCACGTTAAC
CCCATGCGAAAAGAACAACGCATCAGACGTTTCATGAAGGTGTACAACGAGACTAGAGAC
ACCGATGTGCAAGATCAACTCCAGAAAGATTTGATGGAAGAGCATTGGAAATGGCATGGC
GAAAGAGCTGCATAGATTCATTATTTGTTTGTGAAAAACTATGTTGTATTGTGCAAAACT
ACGTTGTATTTGTGTTGCATTTGATCTCGTGGTTTTGAACAACTATGTAATAAGTTGATA
TTGTGGACATGTATAATTTTTTATGTTGTTTTTAGATGTTCTTTGCAATATGTGCGACTG
TACAGTGGCTGAATAGCACCCGTGCGGGCGCCGACTCGTTTTGCATCTTCGTTTTGGACC
ATGTGTTGGAGATGCTTTTTTTACATCTCCGTTTTGGACCATCTGTTGGAGTTGAGCCTT
TTTCGGAGATGTAAAAAACACTTTTTGGTGCTCCAAATTTGGACCATCACCGGTTTGGAC
CGTTATTAAAATTTAGACCATCTATTGAAGATGCTCTAACATGGTATTAGAGCAATTGAT
CCAACCCTAACCGTCGCGTGCAGCTTGTGCTTCGTGCCGTCCTTGGAGTGGTCAGCCTCC
ATGATCGTCGTCGGGCGTCACGTCGTCCGTACCTAGGGTTCATCCATCGACCGTGTTGAT
CGACTGTCCTAGAGAGTTTTATCTGATTTTTTCTCTCTTCCGTCGGTCTTTTTGATTAGC
GTTTTCTTTTCAAATTTTCAAAAATATAAGATCAGTTTGAGTCACGCGCCGCCGTCGTCG
ACTTTCATGTGTCTCTACTCCGACTTCGGCATTGCCTACACCTGCGCCTTATTCGAGTTG
GCGGCCTCATGCGCTACATAGCTACCTCGAATGGCCGCCGCCCGTGCATTCGTCCGTCAT
TCGCTGTGCGCTGGCCGTCGATGCCTTGCTTCAATCGGGATCGTGAACCAACACTCCCAT
CTCCATTCGGATCAGCTGCCTCATGGATCCCAGGTTGCACGCATCACAAATGGTGTGCTC
GTGTGTCGGCTGACGCTCGGGCGTGGGCGTCGCTAGCTCATCCACGCTGTGAGAATATGG
CCCGACCGCCCGAGGTCATGTACGTGCATGCGTTGGGTGCATGGAACTTTCGTGTCACAT
GTACGTGACTGCTCCGTTGGCCTTGGCGCTTCTTTGCTCGCACGTTTCTCCATTAGCACG
TCGTGTCGCCCTACTACACCCGGCCATGCTAGCTACGCCAACTTCATCGTCTGTCAAGCA
GCAATGTTCTTGCGTGTGATCGATTTGATCACCCGCCCGCTCGCGATCCATCCCATTTGT
GCCGTGAGACCGACCTGGCCAGCCTGTTGCGCACGACACTGCAGGTCCTGTGAAGACTGT
CCTGAGTACAACACGCCCTCCACCGGTCGATAATCAGGGTACTGATGTGTCGCCCTGTCG
AGCCACAATGTCGCCGCTGCATGGTTCTCCTCACAGCTGCACTGACTCTTGTGTTGCCAC
TATGTCGCCCCTTTGGGCCGTATTGCCGCGACACGCGGTCCCCGCGACCCACGAGTGTGG
CACCCCGATAGAGGGCCGACGCACGCCAGTTCCCAGGATAAGACCGGGCGCACGCCAAAG
ACATGATACAACAATTCTAGGAAAAAATGGCTTTATTAATATAA
