morexGenes - Barley RNA-seq Database

Contig contig_43343

Source Contig contig_43343

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_43343 (3740 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_43343

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_59184	1	1017 bp	AK372534	Available	Available	None
MLOC_59183	1	253 bp	MLOC_59183.1	Available	Available	LOC_Os01g50720.1, FRAME:+3, EVALUE:3e-20, 13101.m05281 protein MYB family transcription factor, putative, expressed

CDS Structure of MLOC_59184

CDS Structure of MLOC_59183

Contig Sequence (3740 bp)

>contig_43343 3740 assembly3_WGSMorex_rbca.fasta
GGCGCGGGCGGGCGGGCGGGCGGGAGAATGGGACGGCACGCGGGCACCGGCGGCGGCGTC
CAGCAGAAGCTGCGCAAGGGGCTCTGGTCTCCCGAGGAGGACGAGAAGCTCTACAACCAC
ATCATCCGCTACGGCGTCGGGTGCTGGAGCTCCGTGCCCAAGCTCGCCGGTACGCTCGCT
CCCCGCACACTGCCAATTTATTCCAGCTCCGCTCTCTCTCCGCTCTTGTGTGTTTCTTGC
ATGTCTGCTGCTGCTGCATCGTTGGCGCTGAATGCGTGTGCTGAATGAATCCAGGTCTGC
AGAGGTGCGGCAAGAGCTGCCGGCTGCGGTGGATCAACTACCTGCGCCCCGACCTGAAGC
GGGGGAGCTTCTCGCAGCAGGAGGAGGACGCCATCGTCGGCCTGCATGAGATCCTGGGGA
ACAGGTACATTACATTACGCCTTCCCTTTTTTTCTGAAATTTGTTAGCAGTGTGAAATTC
TTGCGAATTGCTGATGAACGGGACGGAATCAATGCAGGTGGTCGCAGATTGCATCTCACT
TGCCGGGCCGGACGGACAACGAGATCAAGAACTTCTGGAACAGCTGCCTCAAGAAGAAGC
TGCGGCAGCGGGGAATCGACCCCAGCACCCACAAGCCAATCTCCGGCGTGGCGGGGGTGG
ACTTGGACCAGCCGTCGAAAGAAAAAAAGCCGCAGGCGGCCGACGGTGCCCTGAAGCAGC
AGCAGCTGCAGGTTTTCGACCCTTTCCCGGCGGCCGACACCTTCGGGGCCGGCTTCGACG
GGGCGGGCATGCCGCTGTACGACCACCTCGGCGGCAAGGACGCGGTCGGGTTCGTGGACT
ACAGCAGCGTGCTGGACGTGTCGGAGAACCTGGGCTACGGCGAGAGCTCCAGCAACAGCA
GCAACTGGAACAGCGCGCCGGAGGCGAACAACGCGCTGGAGGGCGAGGCGCTGCATTGGG
CCTCGGAGAGCAAGGTGGAGCCATTCGTCGGCTACGCCGGCGGTGACGACGACAAGTTCG
CGCTGCCCTGCCACGGCCAGCAAGAGCACAGCATGGCGCATTTTGACTTCAACCTCGAGT
ACTTCTGAGCAGAAGGCCTTTCTGATCTAGCAATTGTCGTATATATTGTTTCGTTTCTAC
ACACGGGCGAGACCAACCCAACCAACCGGGAGATTAGAGACTGTACTTTGTTAATTTTCT
CTAGTCTTTATTACTCCTTTTAACACTGTTTCTTTTCACCGTCTGTTTATGGCTCTTATA
TATAATATGGATGAAATAAGAGGTATAGAAATATGAACAGTCTATAAGTTACCATGAGAT
TCTACTCTTTTTTGTAAGAAATAAAATCTACTCTTTAGCTCGGCGACGGTGAGTTGCTAC
CTCTCCTACTTGGAACTTGGAAGATTGTGTGTTGTGTTCTCCTCTTTTGAAGAAGAAACT
ATCATATATCAATATCATGGCTCTTACTGATTGCTCTGGCAGGCCATCGTCCTGTTAGCT
TCTTTTTTCCCCCGTGGGATTTGTGTCTCACGAAAGCAATGAGAAAGAAACAAAGATGCC
ATTATAGTACTCTACTCGGAATTAGGAGCAGCTGCCGTGCGAGTCGATTTCAGTGATTAG
TTGGGGAAGAGTAATGCATGCACTGTTGTCGCACAACGATTTCGTGGCATTATTAATGCT
GCTGTTAGCTTGCAACCCAATTTTTCTCCAAAGGCCCCCTCCCCTTTTGCTAAAAGATGT
GTCTGAATTACTCTACTCCCGTGACATGGATGGAATAATCTAGCGGTGTTGGTGGAGAAA
AGAGACGAGTGTAACTAAAGAAAGACGCTAACCACCGTGCTGCCCGTCTGTGATTCCTTT
CTACGAAACCGAACGTGCCACTTTGTTATTCATTTTTACATGGGGGGAGATACTTGTGGC
GTCAATTTTGCCGTGAGGCGCAGCGCCATGATATGGTGTCTTGCTTGACGCCAAGACTCT
GACCGCGCGCGGCTAGCGGGGGGAAGCACTGCATATGATGGCTGGGAACGTCGTCGCGGT
CGCAGACATCCGTCGTGTTTGTAACCCAATCTGGATTTTCAGAGGCTGTGAAAGGCTGCC
AAAAAGGAGGGGCCAGCCATCGAGTTGCACCTTCCAAAGAACGGCCGTGTCAGTGTCAGG
TGCAAGCAAATCATGTCGCCTGCCTACAACGGCCGTGTCAGCTGAGTAGTACGATTCGTA
ACCTACGAAACACAGCTGAGGGGATGTTCCAGGGGATCAAGATAAACGACAACAACGAAT
CGAACACCAGACATGCTAGTGGTACTTGGTAAGCTGCTACTGCTAGGCACGTTCGTCGGT
TTTCGCTGGCATCGTTTCATCCCCTCGGCATTGGGACCAGGTTAGTATCGGTTCAGAAGT
ACTCCTATAAAAGCAGACCACCAGACACCTGATCTGACATTCCGATATTACCTGTCATGC
ACCGGGATGATCAGCGAGCAACCAGTGGACCAGGCGGAGCATGCATTATGGCGAGAGGCC
ACGAGGAATTAACGGGTCGCGGTGTTGCCGGGGGCCTAGCCAGTGGCACCGGTCGGGGCG
ACGTACGGCCCCTCGCCCCGAACGTGGCAAAAATAGTGTAGCGTCAAAAAACATCAGATT
TGCGACGTAACGAAAAAGTCCACGTTTTTTTAGGGTAAAAAGGTCCACGCAAAGCGTGAG
AAATCATCTGAGTGCAGTGCTGAAATCGTTTTTAGCGCGTTGAAAAGTGTTTGTTCCAAC
CAGCCCTATACAGTATTTTGCTTAATCCGACGGTCCTACCCGTAGCGGTCAGCGCGCACA
ATTCAACACCTTAATTATGCAGCCGAGAAGCCAGCGCGCCAACATTTACAACGCATACAC
TGACGATTTTTGTGCGCTTTATTTTACCGTCTCTGTTGGAGCACTGTTTTTGTCCCCGAC
GCACGAAAACACCGGTTTTTAACGCGCAAGGCCTTTTTTGGACGTCTGTTGAAGATGTTC
TACGGGGCAGTTATTTTTGGGCGGATGCGTCCTCTACATGTACGCATACGAAATAACATT
AGCGTTGATAGCCATCAGATCTTTAGCGTCTCGCCCTCTCATCTCGTCCTAAGCACATCG
CTCACTCATCGCCTCCCTCGCGGCAATGGTCTGCCCGTCACAACTACAGCAACTCCGTCG
TGGAGATGACCGATATGTGTGTCACTCCGTTAGCAACTCCGGCAACCTCGCAGAAACGCC
GCTCTTGTAGTAGCAAATCCGGCGACCAGACATCAACACCGCCATTGTCCATCGTAGCAC
CACCGTAGCCGTAGAGCATCGCAGCGTCTAGGTCATCGTATGGGCATCGTTGCACGGTTG
TTGCTGCCGTTAGCTCGCCGGTGTTTTTGAAGCCAGATGTGATACATGTCAGAACTGCTG
CAACCTCCGTCGCGACAGTCGACGTTGATTTAGATGGATTCGCCGCCGGTCACCGCTGTT
GCAACCACCCTCGTCCCAGTAGTCGGCTCACTGGAGACCACTAGTGATGCCACCCCTCAT
CACAACAGTTGGCTTGTCAACGTCCACCGGTGCTTCCACCCCTCATCGCAGCAGCCGGTG
TTGTGCATCCTGCTTGCAGCCGACCACTACCGCGACTCCCCATATTGCAGCATCATCGCT
TCCTCACCGTACTATTGAGGAATGTTGCATGGGAAACAAAAAATTTCCTACGCAACGAAG
ACCTATCATGTTGATGTTCA