morexGenes - Barley RNA-seq Database

Contig contig_43338
Source Contig contig_43338
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_43338 (6518 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_43338

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_59176	1	927 bp	None	Available	Available	None
MLOC_59177	1	1339 bp	AK250968.1	Not available	Available	None
MLOC_59178	13	1627 bp	AK364349	Available	Available	None
CDS Structure of MLOC_59176

CDS Structure of MLOC_59177

CDS Structure of MLOC_59178

Contig Sequence (6518 bp)

>contig_43338 6518 assembly3_WGSMorex_rbca.fasta
GTTCCTAAATACAAGTCTTTTAAGCGATTTTACTAGGGGTCTACATACGAAGCAAAATNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGTAGTCCACTAGTGAAACCT
CTATAAGACTTATATTTAGGAACAGAGGGAGTCGGTAACTACAGTAGTTTTTTATGTGCA
CAATCTATTAAAAATTAAACAACAAACAGAATGGAGTGCAGGACATGAGAAATTTCTGCA
TACAGAATATTTTTGAAGGACTATAAATTCCAAAACAGGGAAAATAAAAAAACTAGAGAG
AAGGTTGATATATGTCCATCAGAACAATATACGGAGTATTAGCCAACACATCAATAATAA
AAACAAGAAAGAAATGAACAATATAGTATCAGGGAAAGTGTAGTACCAACCTGATCCGCG
ACGACCTCGACGAGCTCCAGTTCATGAACATGCCATTTCCTCGCGCTATCAGACGGGAGC
ATCAAAACCATAATCGCGTAGCTTTTCGCCGAAAGCTCGGGCCAGTCATTTATCTGGAAG
TTTGAAAGATGCAGCAGGGGGACTCTCACAGCAGCTACCTCCGGTGGGACATACCGGCCT
TGAACAGGGCGGATCCTTGCCAAGGGAGACGTATGAGGCACGATGATCGCTCGGTTGCTA
CTGAAGACTTGGTTGACAACAGGGAGGTTAATCTGCACAGATGAGCCAGCGGGGATCTGG
TGGCGCAGGGTGTGAGTTAGCTGAAGGCTCGAACCGCTCCGGGACGGCATCCACAAGGCA
CACTCCTCCAGACCCAGCGTCCTCCCTAGCTCAACCAGAGTAGTCTTGAGGATGGTGTGC
CTGTCAAGCGTGCTCCTGATCTCATGGGTGAGCATCCTGACATGCCTCCCCGTCTCCTCC
TGCGTGCGTATCAGCCCCATTTCCCTGTCAAGCTCGTCGGCCTTCTTCTTCAGGAACAGC
TCCCTCGTCTTGACGCTCAGCAGGTCGGGTATGATGTGGACGAGCATGAGGGCGGTCGCG
CAGGACACGACGGCCGTGGAGACCTTGGCGACGGTCATGACGATGGCGACGGTCTTGGTG
TGCATGGTGAAGGTCCAGAGGTTTATGAGGTGGGTGGCCCCACAGAGGACGATGAAGGCG
CCGAACTGGATGAGCACCCATCGGTAGGGGAAGAAGGACGACTTCTTGACGAAGTAGATG
AGCTCGAGCGGGATGGAGAAGTAGGCGAGCGCTATGAAGAAGTCGGAGATGTACTGGTAC
TTGATGAGGAGGTCGTCGGTCGGCCAGAACGGCTCGATGCAGTCGCAGCCCTCCATTTCA
CTAGTTAATCTGGAGGCTGGGGTGCCTTTTTTTTTGCTAGAGAGCCGTCGTCGTCGTCGT
CCTGGCCGGCATTTGTTCCCTGGAAATTAAAGGATGAATCGGAGAAACAGCTTGATCAGT
ACCGTGAGAAGAACAGATAAACAACATAACGTCGGGCACGTCCACGGTACGTGATGAAGC
AGGTTAGATCCATTTCATTAAAGTGAAGGAAGCAAAAAATAAAAGAAGATAAATTTGGGT
ACGTATCACCCATACTAGTATGCGATAGGTATCTGTATTGTTACACATTTGAGCGCGGAG
ATGCAGAAATGCAATGTTTACCTAAGTGGCCATGTATGCTAGGGTGTAGGTAGATGAACA
AACTGGTCAGACGAAGCAATCTAAATAGCTGCCCTCAAACTAATTGTGCCATGAAGCAAG
TTAGATTTATTCAAGAAGATAAATTTGGGCACATCCATAACAAATGCGATGGCTGTCTGA
ACTGATACACATGGCGGCTGAGATTGGCGAATCTTGGGCGAAAGCGGGAGCAGCTGCCGG
GCGGTTTCCAGATCTAGCTGGGTAAACGAACCACGGGGAAAGGAAAGGGGGGGAGATCCC
TGGACTGGCTGCCAGACCTAAGAAGCCATGGACGATGCAGGGAGCAGATGAAGAAGAACC
GGCGGAGACCGGGGAAGAAGAAGAAGAAGAAGATGATGATGATGATACCTGCTCTGCTCT
GGTTGCTTGTGGGGCGGGCGCCGGAGATGGTCGGCGCGGCGGGGGGCGGCGGTGGCGTGG
GGAAAGGGGGCGGACGGACGGACGGAGAGAGGTGGAGGAAGGTGGGAGGCAATGGGAATG
GGGGAGGAGACCAGGCCAGGGGGGACGAACCCAGCTCAGCTCAGCTCACCTCAGCTGCAC
ACTCACTCACTGTCTTACTCACAAGTTAAAGTGACTCTCTCTTGACATCCATACGAGAGC
ATCGTACCCAGACCCTCAAACGCTCCTCAAACGGTTCGGACAGGCCGTCCGGTCATAAAA
AAAACGATCCAGACGGACCTCTTAAGCCGGCCTTAAACGTACGGACTGACCGGCATCCCC
CATTTCCAGCCCAAATATGTTGAAGTTTTTCCCCATTCCGATCGAAACGTTTTTTCACAA
CGGTTGAAGCTTTTCTTGACGTCGGTTGCAGCTTTTTTTAACAACGATGGCGAGCGGTGA
CGGCAGGAGCTGCAAGGACGGCGACTAATGGCGAGGACGGATGACCAGGACGATGACCAG
CGGTGAGGACAGCCGACGAGAGGTGGGAACGGGAGAAGGACCGCTCGACCGGGAGGGCAG
GGGCGGGGGGAGCTCCGCTGCATGTTGGACGAAGACGGCCGAAGAGGGGCTCGCGTTCGT
CGGTTGAAGGTTAGGGGCGGGAGAGCAGATCCAACAGCCAAGGGCGGCCAGATCCGACGC
ACATGGTGCGACGGGCCCAAATTTGGGTCGGCACGCCGGCGCGCATCATTTCCCTAGAGT
TAATACAAAGTTGAGACATTTATTTTGAGACAGAGAGAGTACATTAAAATAAAAATGCGA
ATCCAACAATATAACCTCCAATGATATGCACTAACATTTAAAAAAAAACTTGCTATAAAA
AGCAATAACTCGAGGCTTATATAAAAATAGTGCAAGTGCCTCGGTCCTGCCAGTGGACTT
TGACCAAACTCCCTCTTACCCTAACACTACTACTACTAAACTATGGCTGCTAATCAGAAA
CAAGATCTGATGATTTGATCTACTTACTAATCCACATCACCAACACATTAGTGGTACCCT
ACCCTACCCTACCCTACCCTACCCTAAAGCTCCTTCTCTATGGGGAAACTAACCCAATAT
CAACAACAGATTAAAATAGTACAAATACATGCCTTGAACAGAGAGAGGTCCCAGCAATCA
GATGCTGCTAGATTTGTGCCCCTGTGCATGCATCAGATCAGAGTGTATCTGTACAAGATC
TTTCTTCCCTATTATCATATCATATCATATCATATCCATGGCTTACACACACCAGACTCA
TCTTCCCTTTCTCAAGCATAAAAAGGACAGCCATGTCTCCCTTTCACTCCAACCAATCCA
ACACACATGCACACAAACAAAAGCAGGGATCTCATCTGCCCCTCACTAACCAGATCACAC
AAACTATTTACACACACCACCTCTTCCTCTCTTCCCCATGGCTGTGTCTCAAAAATTCAG
CCACCATCTTCATCTTCCTTACTGTGGTAACTTATGTGGTACACTAGCACTCCTTGATGA
ATACCCTGCCCATGAAATCCCGGAACCTCTGCGAGTAGAGCCTCGGGTCGACCGCGGAGA
TCGAGCCGGGGTCCGTCTGCAGCGACTTGTACGCGTGCTCCAGCCTCTTGCTGATGTCGT
AGTCCCGGAGGATGTCGATGATCCCAAAGTAGAGGACGACGTCGTAGGCTTCCCCCCGGC
TCTTGCTCCGGCCCGACGAGACCCCCCCGCCGCCAGAGAGGAACGGGTCGACATCGCTCG
TGGATGTGCGCTCCGCTCGAGCTGGCAGGTGTGCGCCCAGTCTGGCCAACGGTTTCCTGG
AGTCACTAGGGAAAAAGACCGATTTAAAATGAACCTGAAGTTGGAGTTGCCGACTGTCCA
ATTAGCATTACTAATTATTATATACAACAGTTAAAAATGAACTTGGGGTTGGAGTTGCCA
AGTGTCCAGTTGGTATTGCTTACATATAAGAGGAAATGATGAACACGACAGAATAATTAA
GGAATTCGTGCTATCTCGGTATTACAGTTGGGGGGGGCAAACATTCCAAAATGCTGCCAG
AACATGCACTATGTGAAAACTAGGGACGGCAGCAATCAAGTTTGCAATATGTATGGTGAC
AGCTCATGTTTTATAAAAAAAGAGACGGACAATGCGACCCCGGGTGTAACATCCTAGGGG
GGCAAAACCTAAGCGTAGCACTTGTCAACAAGGCAGTGTTCGTATTTGCAAAAGGCGACA
AATTTAGTAATTGAAGCTCAAAGGGATCCAATGTATACTAAACATGTCGCTTTGGTGGTA
CAAAGTGAGTGATTACTACAATAGAAGTACTAGCTTGCTACTAGTCCATGTAACTGGTTC
CTCATTCAGTAGAGCCCTGAGATAGCGACGCATTTGCTGCCTTTTTTCTGGCAGGGAAAG
TTCAAAGAAGCTAAGCAACATATTTTCTTTCGAGATGTCAGTGTAAAAGATTTTCTTCAC
TCTTTATGCTTAACGAGAGCGGGCTCATATTGCAAGCAACAGATATTTGATCTTGCACAC
ACAGAAAGTATAGAAAAAAAATTGTATCATGTCGTTTAGCGAACATTTAAAGGGGTGACA
TCAAATTTCATTTTCATGCCACTGATACATGATGTTTACAGGTACCATATAACATGGACA
AAAGAGGTTCTGCAGTTTAATCAGTCCCTATTTGATTATCAATTTATCGGTACTATTTAT
GACTAGATTTAATTTAATTCTGCAAGGCTCAAGAAACTAGTACAGATGTATATGTGTGCA
AGCACTATTATGACGTACCGGTGATCGGGCGACTTGTCCAAATCTTTGGCTGAGAGGCAC
GGCTCAGGCATGCTGACGCTGCCTTGGCATGCCGACACCACGTTGGCTGAAAGCTCTTCT
GGGTAATATGATTGCTCACGTTAGCGGGAAAAGCCCGTAATGTTGCCAAAATTCCGTACT
TATTTAGAATTTAGAAGAATCATGTTCTTCCTTCAAGTAACGCCGACCCAACTTGCTTAC
CAGGAGAAGTAGTAGAAGTAGATGAAGCCATCTTTGACGCAGGGACAATATCATCACAAA
AGTGAACCCCAACCAATAGACTGTAATCCATGATCCCCTCCGATTCCAAGAACGCGCAAT
CTCGCCTAAGTTGCCTAAAGAGACAATTCAATGACACCATGTCAGACTCGGTGTTGCTGT
TTCATCTGAAGACAATGTAGTCGCGCTAGCATCAGTGGGGAGGGCTTATAGAAAGCTTAC
TCATGAAGCTCTTTATACCGAGAGCGGTGCATCCGGAACACAAAGTTGAGGTCCAAGTCC
TTGAGCGTGGTTGCATCGCCGGTCTCTTCTTCAGACCTGTCGGATTTCCGGCCGTAGGAG
GAGCCTTTCAGGTCGTAACGGCGATGGATGCGGTGGTCCGAGCAGAAGAGATTGCCCATG
ACGATGAACCGCACCTGCGAAACAACACGTGCCATAGTGTGTCATGAACCAAGAAACGGT
CAACAGCACTAGTAGGAGCCAAGGTAGTTAGTTGCTGTTGGCTTGTGTGGAGGGTTTGCA
CACCTTGTGCCCACCATATGGCTTCACGGAGTGAACCCCATAGAACCTTGTGATCAAGGA
GTTCTTGTGCCGTTTAACATGTTTGTGGTAGCTCGACAGCATCCGAATCAACAACTAATA
CACAAGACGCAGAACACCGAAGAAGATGAATTCCAGGCCAAAAGTAAGCAATGCACGCAA
TTGTAAAAAGTAAGGATGATCAATGTGCACAAGATGCAGAACCTTGACTTCGGATTTCTT
GACGGTCTTGATCATGAAGCGCTCGTCCTGCGTGAGGTAGAAGAAGCTCCCGCTCTTCCC
CGGCGACGACAGCCCCCGCAGGGCGTCGTCCCCGCAGATCGCCAGCATGTAGTCCGACGG
GTCGACGCCGAACAGCTTCCTCATGTGCCTGTCATGGATGTGAATCAATCATCATTATCG
AACCAAAAGATTGGAAAAGCAGAGTCAGTTACAGAGCAGCATGAACCAATGACTGAACTG
AACTGAACTGAAGATTATCAGCACCTGAAGACCATGGGGCAGTAGTCCTTCCACCGGAAC
TCGTAGGAGGGATGCGGCGGCGTGGTCCTGGACCCCGCCGGCGGGAACCGCGTCCAGAAC
TTCTCCCGGGGGTCGAAGTCGGCCCGGCCGAGCTCCCGCATCGGCTTCGCCGCCGACCGC
CCCACGGCGTGCCTGATGCCGAGCTGCAGGTTGAGCATGAGGTGGTAGTTCCTGTGGCCC
TTGGAGATGGTCTTCCCGGGCCGCCTCCACCGCTGCTGCTGCTGCGGCGGCGGCGGCGAC
GGATTGGTGCGCGGCGTGGCGGCCTCGTCCGGCCACGCCACGGAGACGGAGGCCCCGAGG
GCGGGGGCGGCCCTGGGTCCGCTCGTCAGCAGCGCGGC