morexGenes - Barley RNA-seq Database

Contig contig_43306
Source Contig contig_43306
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_43306 (7044 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_43306

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_59149	3	1848 bp	MLOC_59149.1	Available	Available	LOC_Os07g48490.2, FRAME:+1, EVALUE:0.0, 13107.m05192 protein stress responsive protein, putative, expressed
CDS Structure of MLOC_59149

Contig Sequence (7044 bp)

>contig_43306 7044 assembly3_WGSMorex_rbca.fasta
ACGAAGTTATTACGCCTCCCGCGGATTGATAAACCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAATGTT
GCGTAGTAGACATCACTAGCCTCGGATTAGCAAGGTGGATGTTGCTTATTTCTTTGGCCC
CTTAGGCATATTTCCTTCTTGTATGTACTCGGACTCGTGCCTTCTTGCTTGTATGATTCA
TGCAATGTTGGGTCATGTTGCCTATGTTTGGTGGAATATTTATCTATCGACATATGTATG
CCTAACATATATCGTATTACTCTTATGTTCGTAGTTGTATTTGTCGTGATTTTCACCTTG
TTACTGGTATATAACCCTCTCGTGGTGTCACAATCATATGCTGGAAATGTGCTTCTAGAC
GACGCAAGATTGCAATGTCTTGTAGGGATTAGAAACCAGATTTTGGGGTTGTATCAGAGG
GAAGGGCGAATCAACAAGTTCGGCAAAAACGACCCACGCGACGGTGCGTGTGCAGCGACA
CAACGGGCGGGAGCAAAGGGTCACTAGAGACCAGCCGACGACCATGCCGTGGCGGAGGTG
CCTTGGGCCCATGCCAAATCAAATGATGCAGGAGCCTATCGAGGGGTGCAGGGGTCTAGT
TTCTCACCAAGAACACGTAGGTGTGCTCGAAATGTCGAGGGGTGAGCATAGATGGACAAA
AATCGAAGAAGGAGTGCCGACGACGGTAAAGGAAGGAGGTGAAGAAGGGGGCATCATCTT
GGCGAAGGTCCACGATGTTGACGGTGATGGAACCGGGCCAATAGTGATGGTGACGTGTTG
TAGCAAGCCAAGAAAGTGGAGATGTTATCGGAGGGAGGTTGGGGCTTTTCTTCTGCATGT
TTGTCTTAGATGGCAGGACTGTGTCTTGATTCTCTCGCTCTAGTTCTCACAGAGAAAGAT
TCACAAACTTCACTCTTGTGGTGGAGCGTGTAAGAGTTTTGTGTTTCTAGAATCCATCTC
GCCGGACCTAGGGTGATATACATGCCCTCTCCGGTGTTTTCTTCTAGGGAGAAGTGATCT
GCTACATACATTGCGGTCATCGTCATCTACTAGTCTACATCAACGGCTTCCAAATCATCG
CTTCTACAAACTCCCGAGTTTTAAGGAATGGTAGCATACACGATAACGGGTTTTCCTCAC
AGCACGACGTGTGTCGATGCAGGAGAAGTAGTATTTTGGCACCCCAGGAATTTTGATGTA
TCTTCCGGTTTTTGTAATGGTAATCTTGTAAGCATCTGTAAAACTTATTATATATGGCAT
TTGTTCTTTCAAGAACAAAGACTGTGAGAGCTAAATCCGACAGATCCCTCAATAGGGTAT
CCGGACATGACGATTGGGGCAGAGGGAAAACATGAGGCGATTTACTTAGGTTCGGCCCCT
CTGAAAGAGGTAGAACTCTATTCCTACTATGTGCATACTATGATTGCATGTATAAAGGTA
TAAACGGCATGATTATATAATGACCTATCGACTAGCTCAACCCCGACTTATATAACATCC
GGACCCCACGAGTTACACAACCTAGTCGGCTACATCGGTGGAGGAAAGGCCCATGGACCG
AACCGATGGCCCATTGCGGAACCGATCCAAAGGGCCTCAGGGCGGCCTACTTGGGCCGAC
GACAACCGAGAAGGCAAGGCAGCCTTAGACGGTAGCACCTTAAACACTACAAATAGTTAG
TAAATAAATGGACAAAATAATTCAAAAAACTGTAAAATATCTAGTCTTTACTTATAGAGA
TGCTTAACCTCTAAGGATGAGTTTGCTAGAAGAGAACACTGCTAGGATGAGTCAATGGAT
GGACTACAAAATACAAGAACACTAACCGTACTCCATAATCCAATTCACACCGCCGGCGTG
CTGGCATTGCGTATTTGCATGCATACAGCTAATGCAAAGTTAATGCCGAGGAAAACACTG
GGGGTAGGTGAATCGAACCAGAACCTTCCAGTACATTCACACCAAACGGCTAGTATGTTG
CAAGGCAATGCCAAGTGTGAGCCGAAGCCTGATGCTGGAGTGCTACTGCTGCAGGACCAA
GATAAATCCAAGAGCAGAGTCAAATATGTAGTCTTTAATTAGTACAGTAGGATACTTAGC
CTCTAAGGATGATCAACTACTAGTAATACACAGAAAAAATTATATGGTATGCTGCTGGCA
TTTTTGGCCATTGCATATTTGCATGGATACAGCTAATGTTGAGTGCTGAATCGAACCAAA
ACTTGGTACTGGCATCAACCGGCCACTGCTGTTAATCGGACCAAAATCTTGCTAATGCAA
CCAAAATCTTGGCCAAACGGCTAGTGCTGTGATGTACTGTACTGTACTGGCAGCGATCGA
GCGAGCGTATCCTACAATTACTTTCCGCCATTTATTCCAGGCCGCTGGAGATATGGTCCA
AAGATTTTCAAGATTTTACTATCTACAGCGCGTGAGTGGTGACTCTGGTCTGCTCTGCTC
TGCTCTCGGCTCTATATAATGGCGCCATCGGGCAGCGCTCTCTCCTCACTCGCACAGCTC
CAACCAGTCTAGCCGATCAGACACGCTCTCCTCGCCGCCAAGATGTTCGGGTTCGGGCAC
CACCACAAGGACCAGGCGCCGGCGGCGTCCGGCCCCAACCAGATCTTCAAGATCTACTGC
CGGGCCTCCGAGGACTACTGCCTCGCCGTCCGCGACGGCGAGGTCGTGCTCGCCCCCGTC
AACCCCAAGGACGAGACCCAGCACTGGCTCAAGGACATGCGCTTCAGCACCACCGTCAAG
GACGAGGAGGGCATGCCGGCCTTCGCGCTCGTCAACAAGGCCACCGGCCTCGCCGTCAAG
CACTCCATCGGCCAGTCCCACCCCGTAAGTCCTTCTTTTCGATCGATCATCACGCCCTTC
TTTTCGATCCATCGATCCGTCGATCTTGAGTTCTTGACATGCGCGTGGACGGATCGCAGG
TGAAGCTGGTGCCGTTCAACCCGGCGTACGAGGACGCGTCGGTGCTGTGGACGGAGAGCA
AGGACGTGGGCAAGGGCTTCCGCTGCATCCGCATGGTCAACAACACCCGCCTCGGCTTTG
ACGCCCTCAACGGCGACAAGGACCACGGCGGCGTGCACGACGGCACCACCGTCGTGCTCT
GGGAGTGGTGCAAGGGGGACAACCAGTGCTGGAAGGTCTGGCCGTGGGCCGAGGCGCACG
CCGCCGTCGAGTCCGGCGCCACCATGGGCAACAACCCCCACGCCATGGGCGGCGGCCCGC
CCGTGCACGCCGTGCGCGTCTTCTGCAAGGCCGGCGAGGACTACAGCCTCACCGCCCGCA
ACGGCACCGTCTGCCTCGCCCCCACCAACCCCAGGGACGACTACCAGGTCGATTCTGCTG
CTACCTCACCAAATTAAACTGCCATCTTTTTCACCAGCCGTGTGGCAGTCTCTCTGAGAT
TTTACTGGATCTTTGTGCAGCACTGGATCAAGGACATGAGGCACAGCAACAAGATCAGGG
ACGAGGAAGGGTACCCTGCGTTCGCGATTGTGAACAAGGTCACCGGCGAATGCATCAAGC
ACTCCACCGGCCAGGGCCACCCCGTAAGCAACGCAAACACACACACAAAGATTGTGCATG
GTTTCGGGCTAGCATCTGGCAGCAGTTCTGACCAGGATCTGTGTGATGGTGCATGTGCAG
GTGAAGCTGGTGCCGTACAACCCGGCGTACCAGGACGAGTCGGTGCTGTGGACGGAGAGC
CGCGACGTGGGCAAGGGCTTCCGCTGCGTGCGCATGGTGCAACATCTACCTCAACTTCGA
CGCCTTCCACGGCGACAAGGCCCACGGCGGCGTCCACGACGGCACCGAGGTCGTGCTCTG
GAAGTGGTGCGAGGGCGACAACCAGCGCTGGAAGATCCTCCCCTGGTGTAAGTACACGCG
ACTGCTCGCTAATTCGACTGAGTTCTGACCAGTGAAACTGAAATTGTTGCGTCTTGCGTG
TGCAGAGATGCTGTACCAGGAGATCTGCTGCATTGCCATCGACACATCGCCATGGATCAG
TCCGGGGACAAGCCCCCCCGAGTCGTCGTAGTCGTCGTGTCCGTCCGTCCGTCGTCGTCG
TCGTAGTCCTCCTGCTGCTGCTAGCGAATAATGTTGCTGTGTCCAAATAAAACCGTGTGC
GATGTGTGGCAATGGTGTTTGCGTGTGTTGCCTTGCGATTGAGTCGGTTTTGCTGCGAGG
AAGAAGAGGGTGTTGGAGAGAGTGGGGAGGGACCATGATTCTAAGGTCTGAACTTTGATG
TAACTCGACTGTGTTTTCTTGGTACTGGGACCTGTACTGTGCTACTCTGTGACCTGCATT
GTCTATTTTTCTTCCATCTAATCAATGGGCTCACCTATCTTCCACCTTTCTCGTACGTGT
GCTGTCCCCATTGCCATTGGAGCTTGCTTGTTCATCGTCTTTGCCGTGCCCAATTTCTCT
GATCAAATAGGCTTGATTTTGCCAGGGTTGATCTCTTTAAAGCCACTTCCAATGCATCTG
TATTAAGATGAGATGCCAATCACATTAAAAAGTTTAACAACTATAACTTACATAGGTGCT
TAAGTGCCCGTTCTTTTTATGGCTTTTTTTAAGCTTCTACGATATGGCTTTTTTTAAGCT
TCTACGATAAGCTATACCTCACATAGCTTATTCTAGAAGGTCAACAAAAAATATTAATTT
AAAAGTTTACTAATTAATCTTGATTTGATTCGGCTTAGAGCATCTCCAACAACCTTTCTA
TACTTGCACTCACTTGCTATTTTATAAATCTTGACCAAAACTATAACAACCTTTATATAA
GTGGTTCCTCATCAATTTTTTTTAAGCTTGTTATATTTGTACCCACACTTTACATAATTG
CCAAGCCAAAGGTCACTTTGTAGTTTTTTAGCAAACATCACTTTGTCTTAATGACAGATG
GATCTGCGTACTAGTGTATATGTTGCGCATGCACTGTGTGTGTACGTGTACGTGTTTTCT
ATACGTGTACGCGTGTGTTGCATGTGTACGTGTGTATGTGCGTGTGTGTGCTGCATGTGT
ACTTGTGTGTGTATGTGTGTATTGCATGTATACGTGTGTGTTGCATGTGTGTAACTGTAC
GCGTGTGTGCATGCGTACGTAGACACGAGTTATGCTAGTATACATGTACATGTACGTATG
CTAGTGTGCAATGTGTCTATGACAAATTGTCACTACGTACCATTATGTGTTTTGTGCAAA
TATAACAATCCAGTATACAAAGGCTATCAAAGCAAAAAATATTTTGACTTTGTAAACCTT
CTCTCTTCTTTTGCTATAACAAGTTTTTAGCAATTCAATATACATAGGTTGTTGGAGATG
CTCTTATTTCAGCTTATTTTAAAAGCCAGCAAAAGAACCGATCCTAACTTGTTGTAGCTA
CTAAAGTTCTTTATATATTGGTAAACTTTTTTTATTTATGTGTTTTACCTAAGTTTATGC
GTTTGACATTGTTTCTTTCTAGATTAAGCACACTCATCTCTTTCCACTTAATTACCTTGT
CACATCATATTTTTCGTCTGCATGACTACTCATATCAGGGAGTACTCCTCCGCAAAAATA
AATTACCTATGTTACTATAACCCGCTCTCTCTTCTTTATTTGTTTGTCATATCACGGTGT
ATCACGGTGTTTGCTAGTCACGAGTGTATGATACTAACTGAGATACCCCAATACAATCAG
CTTTAGCACACATATAAGATGAAGCATTAGAAGAAGCTTATACTGTACTTTCCGCAATGT
TGTTTCTTCGTCAATTGTCGTTGTAGTGAGGGTGCGACTGAAGGTAACCACCAACCCAGT
GAAAGGTTGTCTTTTGGGAAAATGTGTAGTCACTCATCATCGGATATTTCGCTACCAATA
TCATTACAAATATTTAAATCGCATACTTGAATATCATACGGGAGGATTGGTTGGTTATGG
CAAACCATTGTGCTTTTTACTCGACTGGGATTATACTAGGAGAACCCTTTGAGCTGATAC
ATGATAACAATGAATGTTAAGGATATATGTTCTGTTATCCTGATATTGCACTAAGTAAAA
AGGAAGATGCCCCTGTCCAAGGATCTCGCGGTTTGGCGAGGTACAACCTTGTCTTCGTAT
GAATTCCTGTAGAATCAGCTCCGGATGAAAACCTTGTCTTCGATCGATGGCCGAAACTGA
TGATAGTGAGACCTTGCCACCGTTCCCGTCTTGGAGGCACCATCAAGGTGAATCTCCCGC
ATGCTTTTGCTACCTCCGGGAGAAACCCTTGATCAATTGATCGGATGATCGCGGCGCTCA
AGTTTCGTTCCCCCTTTGGGGACGTCATCCTTGTAGGTGTGCGTTGGCTCGAGGGACTAG
TGGACGGTTTCAGCAGTGGTCCGGTGTTTCATGTGACACATCGACAATGTGAAGTCTCGG
TGACGGATGTGATGAAAGCCCGTAGAGAGGTGACATTGTGTGAAGCCATGGTGGTGTCGA
CAACAGGTCTGGGAAGGTTCGTTAATTGACTAATTGACTCTTTTATGATTTTACACAAAG
CATGTGCTCCAAGTTACTCTTAGTCTATATTGCACGAAATGCAAAAGGAGTTGATGTTGG
GGTAAAGCTACTAGAAAGAGTAGCAACTGAAGTTTTCAGCGCAACTGGGGGATATCATTT
TTTAGTTCTTTAACTGATGAGTGGCTGAAGACGAAAAAGAGAACCAGGAATGTTGCCTCC
CAGGTGGTGTTTGGTTGCTCGCACTTGGGCCAATCAGGCCTCGCGGGATGAAAACCCGTT
GTTTGGTTGCCTCGGCTGCACCCACATTTCGGTTTGCACGAAACTTAAAGCAGTTTTAGG
CCTCGCCTGCGAGCTACTTTCGAGTCGACAGTTTTTCCGCAGCCAGGTAGAGCGCGACCA
TGTCTGCATAGTTCTAGAACCTGCAGGGTCTATACACTTAAGGTTCGATGACGATATGAG
CATAATTGAGTCATAGTGTTGGTG