morexGenes - Barley RNA-seq Database

Contig contig_43288
Source Contig contig_43288
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_43288 (8293 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_43288

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_59127	2	1582 bp	MLOC_59127.1	Available	Available	LOC_Os04g54630.1, FRAME:-1, EVALUE:9e-50, 13104.m05653 protein expressed protein
CDS Structure of MLOC_59127

Contig Sequence (8293 bp)

>contig_43288 8293 assembly3_WGSMorex_rbca.fasta
CATCGACATGGTTGTTGGACTGTTGATTGCCATCTGTTCCTCCCGGTGAGATGACTTGCA
TTGCATACCCTTGACAGACATGGTCGGATTGTTTATCACCATCCTCAGTTCCAGTGAGAT
GAGTAGAATTCTTCAGTCAGCCATCCATGTGCAATCATGGTTGAATTGTTTCTCCGGCGC
CTACTATTTTGGTTTTGGTGTTAAGTTGGGCAGAACTTGAATTGCAATTAGTAGTTGGGT
TAACCGCATCGCTAGCTATGTGAAATGGGTAGATATGTTGTCAACCGAGTGGTTAGGCTC
CATCTGTAATCCCTATCTGACAAAAACATGGTTTTTTGGGTTGTCGGATTTTCAGAGGCA
TATCTTTAGTTAGCTCGGGGAGGGCGCGGATGAGACGGGCAGCGATTTTGCTGCCGGTCT
TACTATTCCGACGAGAGGGTTCGGGGAGGAGCGAGCGGAAGAGGAATATTCGGATTGGGA
TGATGGGTTGGTGGAACGGTGGATCTGATGAGTAGAAGACGGCTGTTGTTGCCGTGTGTC
TTCTTAGAATGACCGGTTCATATGTGGTTCTCTTGAATGCTTCACTTTGGTTCCTGAGCA
TAGCAGCGATCTGGTAGTGGAGCGAGTCCTCTATCTTGTTTGATAGCTGTGATAGAGACG
GGATACTTTAACTTCTGATGAGCAGCACGAGGTTAGATCCACAACTGATGATGAAACATG
AAATTCAATCTAAAACAGTCTTACAAGAGCACGCACATAGTTCCTGCTGGTTATCCCGAG
TGACCGGTGATGAGCTGAAATGACCATGCCTAGCTTCAGAATTGTTCATCATCCCTTCTG
TCCTTTTTTCCAAAACCTGTTAAGCAGACTTTTAGCGTCAATTTTCAGATGGAGTGTTAA
TTCTGTTTTCAACGATTCCCATCCACATGTGACCTCTCTCCTTCATAACACCCGTACAAA
CACCAAGTGACACATAAGTTATTTTAACAATAGGTAAGAGGGCTACAGCCGAACCCCTAT
TTCATCCCTAAACGCCCGAACGTCTGTCCGATGCAGAAGCTAATCGCAAACTTTATTTAT
TGCTCAATAATATTTTTTATACATAAAACAAGTTGTGTTTTTTTTATACATGAAATAAGT
TTTTTTTACCCGGTGCAACGCACGGGCATTTGTACTAGTTTCCAACAATACACCGTTTTC
TTGGAGGCGTACTAAATTTGGGTTTCACAACATCCTTCTTTGGCATTGGCGGCCACATCA
AATAACCTCCTTCATCTGATCCCGTACAAGTTTCACGCTCTTCTTCCTTCAAATTTGCTA
TTTGCGGATGCAGTTGCATAATCTTTACAGGTGCAAAAAACTTCGACAAAAATTTACTGT
AACTTTACTTCATGAAGTTATACTACTTCTACGCAAACCAAAAGCCATTCTTGAGCTTTC
CCTCTCAAGGAAAAACATAATAGACGCGACTTCATAGCATCAGGTTCATAGTCTTTTATG
CATGTCATGTTACACAACTCAAATAATTATGCAAATGCATACCAGTATCTTTAAAAGCAG
AGCCTATAAATTAATCTTGTTGAACCATAGAGACCAAATGTGGTTTAGTCTTATATTGCT
CAGAAGCAACATTAGGTTATGCATTAGTTCGCACATAAAGCTATTTCTTGGAGCAGCAAA
GCGTCCAAGGTTACCAACCATAATATAATTATTTTTGGATTTTCTAGTGACAACACTTGC
AACAAAAATTAAAAGTAGAACAAGAACTGAAATAATATTCTAACAAAAACTCAAGACAAT
GACTAGTACACAGTCCTCCCAGACAAGATGACAGAAAAAGATTTAATGAGTCCCTTTGAT
GTTCTGGTAACAGATAATAGAAAGGTTATCACACTCTTTCTCCAAGGACCGACCCTGAGT
TATGGAACCCACGTTCAATTGCGACAAGGGTTTGTACCTAGCTTTTGCGAGAGAATAAAA
TTAGGCATGGATATGAGGACTTGGTTCTTACAACCATATATTTGTGATCGGAATCATCAT
GATCTTAAGTTGTGCTCTGGAAGACGACCACTAAGATGTGCTTGCAACGTATCAAAGTGG
GGATGTGTCCAAATCATATCTTGATCGGAACGCGCCCTACATCAAGAATCAGTTATCCAA
CCGTAGGACCTTTCCATCGCACGAGGTTACCTTGGTCATTAAGATAAATCAGACAAAAGC
ATTGGGCATTTAATGACTCCACCTCATGTATCCTCAGAGATTGGATCCACACTGTCGTAC
GAAACCTTTCAGTCACTGGTGTTCAGAATAGTGCTTCACATTCTGCCTACCCCTAGCCTT
CTCATGGCTCGAACCCCGTGATCATGCATACCTGCATGGACAAAAAACGCGAGGGAGACA
AGAGACAACTGCGATGCAATTTTATTTCACACATGCATGCCATTAGTTCAAAGACATTAC
ATCGATCCCTCCAACAAATACATCGGGTTGCAAGGTTGTGCCTCAACCCATGACCTCACC
TAATTACTCATACATGGTGTTCGGATCACAAAAACAAATCATTGAAGAACACACAAAGAT
GAAAGCTTTATTGCTATTATGTCTTATAATGGTTGCTAGATGCAATACACCATTACAAGG
ATGACTAACTTGGAGGTGGTTAGTTGCAGTGGTGAAGATGATGGTGGCTATGTAGATGAG
ATGGGAACTCGAGGCAGCTAGGGGTGACGAGTCACTTCTGTTGCGGAGATGAGGTTATGG
ACGGTGCCATATTGCGAATTCAACAAAAGCCCCTTTATAATAGTTGTTTGGTTGGGATTT
TTTGTGTCGCAACTGCCTGGTATGAGTGCCTACGCTCCTATCAGACCCCGTCTTGCACTA
TGATGCACCTCCTACTTGATCTTTCTCACCTCTAATTTACTCATTTTCAAGTATATGCTT
GATTTCGTCATGCTTAGCCATTCTCTTGTGAAAACAAAAGTTATTTGCATTCATTAGTCA
TTAATAAAAATATTGGAGCTGATATCTCATTTTTTATGAAATAAAGCGATTTAAATCAAA
ATGTAATGAGCATAAAAATAACACCAATCAGGTTCCTGAACAAGACCAAGCCGCCACTAG
GCAAAGCACCAGCAACATAACTTTATGATCGAGATGGGTGGTGAGTCTTAGTATTAGTTA
TTACCGATCGTCTCATTGTGAAGCGAAGTAGCAGAAGAGAAACCATGTTGCACACATCAC
ACATACACGTTGAATTGATGCAACATATTGTATTTGGATCGATAGGTACTGATTATTGCC
TCACTTTTGAAGAACAACATGGCGACTCATGATGACCTAGTGTCCGTCATGTCGCAAAAG
GCCATCGTGCTCGGGTGCATCCAAGCGATAGAGCATGCCCTCTGATTACAGTGCAAGGGC
ATGGCCAATGCATAGCTTTAGGGTGATGCCCTATATGCCATATAGGATCGGATATTGATT
CGGATGGGGTAGCGGGATCCTTAGCAGGAGGCGGATGCTTGGAGAGAAAAAGTATAATCT
GATGCAAAAAAAATGAAAAGTTGAAGTGAAAAGTAAAGATGCATGTCTATGGGAGTCTCT
ATTTTCTTTTTCTTGATGAGATCACTAACGGTAGCTTGCATTCAAAAAATATATCAATGT
AAATACCTTAAACTACTTTTTTCATAGGACATCCGTATATATATACCACCATGTATATTG
CCCTAATTAGCTTGAGTGTTTTCACATGGCTCATGTAGCTATACTGTTGAGAAAACGGAA
AAGATGTATAACTGAAAGGAACAGTGGACATGAACCTTTGATCTATGGGTGTATAGACAC
CGTATATGAAAAAATAGTTTTTAAATAAAAATTCAAAAAATCTGAAATATTTTTAAAATA
AACTCTACCTTTCATTGTACTTTTAATTAAAAATCTGCAAAAATCATTGTTTTCTTTTTA
GAAAACAAAAGATCAATCAAAATAGTGTGAATAGTGACCTATAATAGCAACTATATTTTG
ATTTTTGCACCGAAGTCAAAAATGGCTTCTATTAATGATTGTCAAGTTTATTTAAAAAAC
TTAAACCTTTTTAGTTTTCTAAAACCTATTTTAAAAATAATGGCATATCAGGTGTATATA
CACCTAGAAACAAAGGGTATTTCCCAAGGAACGGTGTTATTTTTCTCTCTGCATCTCGGT
GTGAAACAGTCAGTGCCAACTATTTAGCAGTAGTTGGCTTTGGCGTCCCTCGACATTAAC
ATGTTGACTGCTGAACACTGGCTGAAGTTTGTACAGATACAGAGAACTGTGAGCTCGATG
CACAATTTGCTCCTTCAGATCTACTCCCTCCGTTTCTGAATATAATATTTTTTATAGATT
TCATGGACTACGTGCGAATATATCTGAAATCTTTAAAACGACTTATATTTAAAAACGGAC
GAAGTATTATTGATCGATTTTAGAGTTTAGAGATATATTTAGGAACCGAAGGAGTATTAT
TGATTGCAATTCTGTTTGCACTTACATCAATCATTCAGGATTTCTTCATAGGCCCAGATG
CTGCAGCTCGAAGAATAAAACAGAAGTTGCAGCTCAAATAAAATGACAAGCGACGAGACA
TCACATAATAATACTGTAATACTAGATGATTGCTTATCCATTTAACATACTCCCAAGAAG
GCAGAGAGAATACATGGTTCTAGCTTTACAGTATAAGTGGCTCTAGGTACAGTTAATACT
TAAGGTAGTACTGCTCCATCATATGCAGATTACAACGCTGCAATCACAGAAAACCCTCAA
AGGCAAAGAGACTCCAGATGAGCAGAGCTCTGCACCAGAGCCATGGCATCCATCTCTGAA
GAAACAAGGAACCACTTGCAGTCGCAGCAGCGATGGAGCTTGGAAATGCAATAACAACGC
TACAATTTCGATCTCTAGTATTAGTTCTATACTATCACCATGCGCAAGCAGCGTCTGTGT
CTAGTAGCCGTATCGTGTCGTATATCTACACGTGTATGTGGTGCATCTGTGCGCTGTGCT
CAGGCGTCGTCGGACCAGTCCTGCATCTGGTCGTCGGAGAAGAGCACGTCGACGACGTTG
TCGATGAGCCCGTCCACGAAGGAGTTGCAGCCGAGGGTGAGCATCTGCCCGATCCGGCCG
CGCGCGCTGGAGACCCACGCGAACGTGGCCGCGGACGCCACCACGGCCAGGCACAGCCCC
GTCGCCTCCTCGATCTGCACCGTATCCAGCTTCTTGAACAGCGAGTCCCCCGTCGCCGCC
TCCACCGCCACCGCCGCCGCGAACGCCACCTGCACCACCACAAACAACCACGACTCGTTT
AGTTCTCCGGTTCGGTGGTGTCCGAACAGAGCACAGTTATTACATAGGGGGGGAGAGGTG
TGGACCATGGCGAGGCGGCCGGAGATGGTCTCGAAGTCCTGGCTCTTGCGGGAGCTCTCG
ATGTAGTCGGCGAGCGACGCGAAGAAGGGCGGCGCGCCCCCGACGCCGCCCTCCTCCACG
GCCTCCCCCGGCAGCCGCTTCCGCGTCACCGCGCCGCTGCCGTCGGCGCCGTACGACCGG
AGCGTGGATAGGCGGGGCTGGAGCACGATCTTGTCCCGCCTCGTCTGCTGCTGCTGCGAC
GGGGGCGCCGCCCTCTGCGGCGCCGCCTCGCACACGATCGCCCTCGCCACGGCCGCCATG
GTGGACTCGAACTCGAACTCGACGGACGGATATCACCGGAGACCTTGACGAGCTGCTGGG
TTGTTGGAGGGCGCTCGCGAGCAAACAGCCGGTGAATGAGTCTACCAAACGCTGGTGCGC
TGCTCCTCTCTCCCCCGGCTCGCCGTCCTTTTGAAAAGCTCGGCAGCGACAGCGAGGGGT
GGGGACGACGTGGCCGTTCACCGTCCCGGTGAATCTGTGATAAAGGACGCGGTAAAGGAT
GGATGAGACGGGTGAGATTCACGAGAGGGGCACATGTGGACGTGGTGGAGCCCCGGCCGA
GGTCCCGGCGGGGCTCTTCTCCCGTCGACTTCGCGCGCGGCCGTGAATTGTGTCGCGTTC
CGGCGAGTTCCGGGCATCCACGTAACCGCGTGCTTACCCGACACGCAAGCTCCGGCGGCC
GTGGGCCGACGGATGGGAACGGACGTGGCGGGGTTCCCGGACACAGATGTCGCCCTCCAG
CGATAGGATCACGGGGGACAGCTCTTCCCTACGATCCACATCGTACGGTGCGCCTTTGCT
GGTTGTATAATCTCTGAGGCCTTGGGATGTCTTTTTTTGTTAAATACACTTGTAAAAATA
ATATACACCTAAATTCATCGGTTTAGTTTTCAGCTCATTCTATACTATGACCGGCATAAT
ACCTCTGTAAAATATTACATTTGTAAAAGTAAAACGACATTCCAAACAGGGCCTGAGTCT
TTGACCTTTCTTCGCAAAAACGGCCCCGGAAACGCAAAATGGTTATCGGGTGTAAATATC
AGATTTCTGGGGCAATTAGACATGTGATCTGTGTAAAATCTGACAAATATGATGGTTTGT
GAAGAAGGAAAAAAACAGTACTTCCTCTGCAAACTAATATAAAAATGCTTCGATTACTAT
TTTAGTAGTCTATAAACACTTTTATATTAATTTACGGAAGGAGTACTTAAAAAAAATACA
AGATTTATATTGCTTTATTTATTATTAAAAGCTGTTTTAAAATGCTGTACTGCTTATCTG
AGAGCCAGAACTCCATCCCTGCTCTGGGAAGTGCAAATTTGGATGATGAAATATAAATAT
GACAAACCACCACGTCTTTGATCAGACATCGAGTGCTTGTATATATATGCTGTTTACATT
TTTATTTATTCTAACCATGCGTTGCTTAGATTTTTTTTTTTTTTGCATGTTCATCTATAG
TCAGTAGTCTATAGTCACTAGCGCCTTGATAATTTTGTTGGGATTTCCGTGAGTGGTAAT
CGGTAAAAAAAAATGTGAGGCCGCAAGAGCTGTCGTTTCTGGGTGGTGGATACTGGATAG
GGCCGTGGCTGGCTGATCGGACATCCCCATGCCCTGGTATCTATCTGATGTTGCGTTTCA
TGGGCATGGGCAGGGGGCAAGGCTTTGTCAGCAACCTGTGAAAATGCAGCACCCATTCCT
GAATCGTATGTTTGCGAGGTGACGTCTCATTTTCGAGAAATTTTTGCGAGGTCGACGGCT
CCTGGCTCCCATACGGGCCCGTAATCTACAACTGTCACCCGCAAAGAAATAAAAATAAAT
CTACAACTGTTGGCTAGGAAGGAGAGTACGTACTACTACTGCTGGGCTATCACCATCTCA
AGCCGAACGAAAGGACAATCAGTACAAGGCTATCGCTGTATACCTTACATATGATCAGAT
CGCAGCCTCTCGGCAGATCAATTCGTTCCCACCGTCTACTCACATCGCTTTAAAATTTTG
CGGTAGGTCGTTATACTCTATCGTCGTCGACCCCAATGGTAGGACAAGTGTGAGATCTCA
AAATGTTTCTAAACCGGAATTAGATCCGGCTATACTTTTATAGAAGATCAAAACATCAAG
GTCTAGTCTGGTTCGCGTCCAGGGAAAGTCTCGCCTGGGCTGGGACGTGCCTCGACGTTG
CATGTAAGGTGTTTGGTTCAGGTCCTCAAGATGCCTGGTATAGCCTGGCCTGGGTTTGCA
TGCAAGTGATTAGCCTGGACAGTCAAGCCAGGGCGATAGTTCGCCTGGGCCAGGCGTAAG
AATTGGAGCGCCTGGCGAACACTGCAGCTGCCTGGGCTCCTTTAATTCTTTAATTATAGA
AATGTTCATCTTACATGTGCTCGTGAGCCAGGGCAAGGCGTAAGACTCTTTTTTATTCAT
AATGAACTATCCAGGCGAGGTGGTAACCAAACGCCCTCTCATCTAAATTAAGTTGCCTGG
CCAGGCAGCAAAACAACCAGAAAATGTGTCCACACCAGGCAGGGCTATTGCCCAGGCACG
GTCCAACTAAACTAGACCCAAATTTAGAAAGCATTTTGGGGCGGATTCTCTGCAAAAACA
CACTTTAGCAGAACAAGGCCATCAGACTATTCGCAATGAGGAGTAACATAGAGTAGTAGC
ATATATATGTTACTAGCCTAAGTTACTACCTCCACAGTGGATAGTAACATAGACGTAGTA
ACTTTGAGCTTATCATTTATTACACTATAGACTCATCTTGTCTTGGTATCCGCTATGTTA
CTCAGGCTGGCCATAGTGGGAGTAACNNAGGTAGTATCATGTACTTGGGACTATCAAACA
TGCTGATGTGGCA