Map Locations of contig_43266 (6790 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_43266

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_59102 2 4013 bp AK375989 Available Available None





CDS Structure of MLOC_59102






Contig Sequence (6790 bp)

>contig_43266 6790 assembly3_WGSMorex_rbca.fasta
GCTCCCGCAGAGCGCGTGCGACGCGGGACGTGGGCGGCGGGTCGACGGGCGGCGGCGACC
CCTGCGGCGCGGGGTGGCAGGGCGTCTCCTGCACCGGCTCGGGCGTCACCGAAATGTAAA
CATCCTCTCATGCCAGTTCGTTATTCGTCGGTGATTGATTTTTGCTACTGCATCCTAAGC
TTGCGCTTCTTGTCTCATGTCCAACAGCAAGCTCGCTGGGACAGGGCTGAATGGCTCTCT
GGGCTACGAGCTCTCCAATCTGTTCTCACTCAAAACATTGTGAGACCTCACAACTTGCCC
ACTGTTCTCGTTTTTCTTCTTCTGTTTGTGCATCATGTTGACCTCCCCAATTCCGTTACT
TGCAGGGATTTGAGCAACAACCATATTCAAGGTTCAATTCCTTACCAGCTGCCACCAAAC
CTCACATATCTGTATGTATCCTGCCCTGGTATAATCTGTTGCTGCATTTGTTTGCGTCGG
TGGTTTCACCCTGAATGGCCGTACAGGAATCTGGCGACCAACAATTTCTCTGGCAATCTC
CCATACTCCATATCCAACATGGCTTCAATTGAGTACCTGTAAGAAAATGTGTTCGTCGCA
ACTTTTTTGGTTTTATACGCACGACTATGTATGTACTAGCATTCAGTTTTATTGGCAATA
TGTGATCGCAGTTGACCTTTCTATGCAGCAATCTCAGCCACAACGCACTGGCTCAACAAA
TAGGCGATTTGTTTGGAAACCTCACTTCACTTTCAGAGTTGTAAGGCATCTTCAGACTTT
GCTCTTTGTTTGCAAACTATGAATTTATAAAAATGTGATTAGGCAATTTTGTCATCCACA
CACTTTTTGGGATACCTTTTCCACAACGTGGCACCTATGTCTTCTGGAACCAATATAGTT
CAAACTTTATTTTTTAAGAGCATAAATAATGTAAATTACTATAACTCATTTGCTGGCTTC
ACAGCTCATATGAAGCCCTCTCAATCCACCAATAACTCCCATAGTCCCATCTCCTAGCAT
CTCATTCCCACCCCGTCACAGAGAGCACCCATCCCTTCTCAGTACAATCCTTTCACTACC
CCTACTACCTAATCATCTCTGTTTTGACATGCACTTGTACCCTTCAAATATGTAATGGTC
ATAAAATCACCTTCTGGTTGGTACATACTCTTACCTTTAGGTCCATATAAATCCATCTAA
TGCTATTTATACTGCATTACAGGGACGTGTCTTTCAACAAACTGACAGGGGATCTTCCAA
CTTCTATTGGCTCTCTATCAAATATTTCTAGTCTGTAAGTATTGAGTGATTTTCTTAAGA
GCAGAATTTGACTCTGTGTTCAACTTTTTAGCCCTGGTTGCAACATTCTAACACATTTTG
CAGCTATATGCAAAACAATCAGTTAACAGGTTCTGTCAATGTTCTAAGTGGTCTAGGCCT
TACTACCCTGTAAGCGAGTTTTCAGGCAGCTATTTAACTCGTCCTGTTGTTTGCTTGATA
AAATCCTAATCTAGTCTTCGTATTTGACAGAAACATTGCAAACAACAATTTCAGTGGCTG
GATACCGAAAGAGTTCAGCTCAATCCCAGATGTGATGTATGTCCCAGAACGTTTTACCAC
CACTCCTTAGAACTGTAGATTAGTGGAAATCCCTTCTCTATGGAAATCCTTGTTAAAACA
TTCTAATAACTTGTTGCAATTACAACTGTAGACTTAGTGGAAACTCATTCCTGAATGGAC
CTGCTCCTCCACCACCACCTTTCATGCCACCACCCCCTAGAAGGCCGCGCAATCGTCCTA
ACCGTTCTGGGGGAAGTGGAAATGCTCCAAAAGGCTCTGAGAGCTCCACTGGTCAAGGTG
GAAACAATGGTCTGCAGACAGCTTCCCTTGTGGGGATAATTGTTGGCTCAGTACTTGCTG
CTTTGTGTGTGCTTCTTCTTTTGGTATTATGCATTCGCAAATCTCGGAAAAGGAAGGATG
ATAGCAGCACGGGATCCAAAGATTTTGTAGGTCCACTATCAGTGAACATAGAGGAAGGTA
CTGCACTTTCTTATGCTGGCATGTTTTCTTGCTGCTGTATTTTACTAGTACAATCTTATG
CTATTTTCAATCAGCTGAGATACTGCCGTTAGATGATAAGGCAACTGTAAAATTGAGGTG
CTGTTTGATTGGTTCCGAAACCGGTGCATGTATCAGTAATGAAAATCATGTTCTTCTACC
TTCATTAACCCAGTTTCACAGGCCAAGCCATATCAATGTAAGATAGTTTAGTTCTGACCA
TCCGTAGAGCCTAAGTATCATTTGCCTGCATAAACAAAACTCACATGGCACACTATGATT
CACGATGCAACCTCTGGCACAAGGTAGTACATTACTAGCATTTGCTGTCTTCTCACGCAT
AGCCTTTGACATCAAGATCAGTATAGTTTTGCAACTAGTTTTTGAGGCACGACACTAAAT
CTAGTAGTGAAGAGCTTGAAAGCTTGGATAGTCTGTAATATGCACTCAATAGATCTAATG
GTGGCACATAAAAATTGCAAACCCTGTTCCCCTACCCTCCCATCGCCAATTTCTCTCATT
TGAGAATCTTTGGTATTTTAACTGAATTTATAGCACACTTGTCAGTCATAATTCAGATTT
TTACCTTCATCTTTGTTTTTATTTTGTAGCATCTAACAGAGAAATCCCAGAACAAGGTCT
TGAAAATACGGCTATGAAAGTCCTGCCTGCTGAGAAAATGACTCCCGAGAGGGTTTATGG
TAAAACTGGTTCTATGAGAAAGACAAAGGTTCCCATAACTGCGACACCTTACACCGTGGC
TTCCCTCCAAGTAGCGACGAATAGCTTCTGTCAAGATTCCCTTCTGGGTGAGGGTTCACT
TGGTCGTGTTTACAAGGCCGATTTCCCCAATGGAAAGGTAAAATATGCTTCCTGCCGTTT
TAAAATGAGTTATATAACCCTGGTGGAATTTAACAAGTCCTTGTTATTACTCATAAACAT
CAAGTTCTTGGGTAGCTGAATCAGCTTATTCCCATTTTTTGCCAATTTGGAGTGCAAAAC
TATTTTATGCATTTTGAACTTGATCATTACGAATATAGCAGATTATTCATTTACCATGGT
TAATACTCCCTCCGTCTCAAAATAAGTGACTCAAAAATGACTCAAATTTACACTAACTTT
AGTACAAAATTGAGTCATTTTTGAGTCACNNATTTTGGGACGGAGGGAGTAGAATAAGAA
TTGGTTACACTGTCCAGGCGACTACTGTTTTCTAGCATGTTTACTATAAAATGCAGCAAA
TGTAAAAATATAAGAGGTTTCTGATACACCCCCTTCCTCTTTACCCCCTCTGTAATGCTG
TGCACTCCAGCTGAAGTCTATTCCACTTTTGCAGGTTATGGCTGTTAAGAAGGTAGACAG
TGCCGCTATTTCCTTGCAGGAAGAAGATGATTTCCTTGAGGTTGTATCAAGTATGTCACG
ACTTAGGCATCCAAACATCGTGCCACTTACAGGGTACTGTGTGGAGCATGCACAAAGGCT
TCTTGTTTATGAGTACATTGGAAATGCAACGCTGCATGATATGCTGCACTTCTCTGATGA
GATGGGCAGAAGACTTACATGGAACATCCGTGTAAGAATAGCACTTGGCACCGCTCGGGC
ATTAGAGTAAGTTACTTTAATCCCTTCCTATTTCTGAAGGTTCTAGTGGATGATGCATAG
AATGTTAACGTTTTCCAAACCTTTGTATAGATACCTGCATGAGGTGTGCTTGCCCTCTGT
TGTTCATAGAAATTTTAAGTCCGCAAACATCCTACTTGATGAAGAGCATAACGCACATTT
ATCTGACTGTGGTCTCGCTGCCTTGACACCCAATACCGAGAGACAGGCAAGTACTTCAAA
GACATCCAAGTAACAAGATTGTTCTCAAATGGCACCTGTAGGTGTAACCTGCACTAACTA
CTTGGCTTGTTGTTCCAGGTTTCGACTGAAGTGGTTGGCTCATTTGGATACAGTGCCCCA
GAGTTTTCCATGTCAGGAATTTATACTGTAAAGAGTGACGTGTACAGTTTTGGAGTAGTG
ATGCTAGAGCTATTGACCGGAAGGAAGCCACTAGACAGGTATATACCGTCTAGCTTCTGT
CCTGATTTTGCTGTGTTACACCTTATAATTAGTAAAATGACCTTTGGACGGCTGTTGCAG
TTCTAGAGAGCGGTCAGAACAGTCTCTTGTTAGATGGGCTACGCCTCAGCTTCATGATAT
CGATGCACTTTCTAAGATGGTTGATCCAGCACTAAATGGAATGTATCCTGCAAAATCGCT
CTCCCGCTTTGCAGACATAATTGCACTCTGTGTTCAGGTACCGTCTTTCTTTGGGACAGA
TATTCAGTTATGTGTAGCGACTAGTGACCCATAATCATATGGTAGCATTCAATAAATAAT
AAAAGAAGAAAAGAAGACGCCTAATAGTTTGTTCTCATGCAATCTAACATGCCTAATCTG
ATTAACATTGCAAGTGCTAAATTACTTGATCTATGGTTGAGTTGCTTCGATTTACAAAGC
AAATTCATGTGCCTTAAAGTTATCCTGGCTCATTTCTTAGAATTTATTCTTGGCATATTT
GTCCTCATGTATTTCCTGTCAGGGGCATATCCTAACACCTAATAATTGTTTCTGTGATTT
CTTTGTGCAGCCGGAGCCAGAGTTCCGTCCTCCTATGTCTGAGGTTGTCCAGCAACTTGT
GCGCCTGATGCAGAGGGCTAGCATAGTAAGGCGGCAATCAGGTGAGGAACTAGGGTTTTC
TTACAGAGCTCCAGAACGTGAAGGAGATGCGAGAGACATTTCCTTCTGAGCACTTTCTAC
AATGGCAAAAGTGAAAAGGTGGTCTGAGGGTCAAATACAAGAATTGAGTGACTGCATATG
AACTGGATACATGAGTTGTTCAGACGGCGGTTGAGGATCAAACGAATTTGAGGAGATAAT
TTTGGTATTTACATTGTCCAATTATGCTCATTCTTCTCACTTTTTTTGTCCGGGGAAGTC
TACTTCACAGTTAAACTGTGTTCTCAAATCAACGGTGTGTACAGCATGTTAGTCGGGGTA
GAGAAAAGAAATGTTAATGCAACAGGATAACTTTGTTGGATGTCAAACAAGTACATACCT
TTTACTTGGCACCGTGTTCCATTCTACATCATGTTCTTATTGTATAGGTGAAAATTTCTA
TGTTATGCAAATTCTTTTTTAAGTAATTTACGGGAAAACTTTGATCCGTGTTTGCCCATC
ATGACATATAATACATGGAGCGATACCTCAGTATGAACTATACATCTCAATAACGTAGCA
GCAGCAAGAATTGTTACATCTCCCTGGAGGTCCTAAGCTGCTGTTGCTAGCAGTGCTATT
TAAATCCTCGTTGCCAATCATAGATATACATTGGAGAAAAGCTATGCCAAAATCAAAGAC
CCCATGAAGATCTTGAGATGAGAAATGCAGGTACATACCCTCTAAAGTTATCACCTATTC
TTGTCCTGTATCAAGTTGCCGACCATCTTGGCAAGGGGCACGGTGCCCTTGGCCATGATC
TCCAGCTTGGACGTGGTTGAGGCGTGCGCGAACAGCGAGAGCCCGAACATGAGGAGCTCA
GGCAGGAACAGCCTCGACGAGAGGAAGCCGTGCCAGTAGTGCGGCTCGAGGTCGAAGAAT
GCGTTGAAGAAGCGTCGTGTACCTTGGAGGTCGAGCTTGAGCAGGACGTCCATGCCGAAG
CAGAAGAATTCCCTCTGCCTCCGCCTGTCCGTGGGCCACAGCTCCTTCCACACCTGGGCG
GCGAGCGCGTCCCCGGCGATGCCGCCGTTTCCGGTGTCTAGAAACCGCACGATGGAGTCT
GCCACGATGGGCGCGGTCGCCAGTGTGCGCGCCACCATGTACCCTGTGGATGGATGCACC
ATCCCGGCCGTGCCGCCGATGCCGACCACCCTCTGCGGCAGCACGGGCAGCGGCCCGCCC
ATGGGGATCACGCAGCGCTCGTCCTCCTCGACGCTCCTGATGCGAATTCCCAGGTGCCTC
AGCCGCGCGGCCATGCGCTCCTGGATGTCGTCCATGGATAGCCCCGGGCGCGCGACCAGC
GACGTCTCCTCGAGGAAGATCCTGGTGGGCGAGAATGGCATGGCGTAGAGGAAGGTGGGC
ACGCGGCTGTTGCGGTCCTTGATCGCGGACCCCTCGGGGAGGTGTGAGTCGCGCCAGTCC
ATGAAGAGCATCTTGTCGATGTCGAATGGGTGCTCGTCGACCTCGGCGAGGATGCCGTAG
GCGACCTGGTATCCGGGGTTGTATGGCTTGTCGTACTGCACGAGGCAGCGGGAGAAGCCG
GTGGCGTCGAGGACGACGGTGGCCGGGACGGCGACGCCGTCGTCGCAGACGATGAGGGAG
GATGCCTCGTTGTGGACGACCTTGACGACCTTGGCCTGGTGGAAGCGGACGCCGTGGGCG
ACGCAGCGGTCCATCATGGTGGACTTGAGCTTGCGGCGCGCGACGCGGGCGTAGGGGCGG
TGGAGCGACTTGGAGGTGTGGTCGTCGATGAAGACGGAGGCGGAGGGCCAGACGGTGTCG
AGGCAGTCGGAGAGGCCCATGGCCTCGAACTCGTCGACCCAGACGCCGTAGTTGTTGGGC
CAGACGAGGCCCGGGGAGGGGTCGATGGAGACGACGGAGAGGCCCGCCTCGGCGACGCGC
TGCGCCACGGCGAGCCCCGCGGGCCCGCCGCCCACCACGGCGAGGTCGACGGGCCGGGAG
CGCGCCGGGT